Last active
December 20, 2015 19:29
-
-
Save mtw/6183914 to your computer and use it in GitHub Desktop.
Change strands in GFF file
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| cat ORIG.gff | perl -ne 'chomp; if($_ =~ /^\#/){print $_."\n";next;} my @F = split("\t"); if ($F[6] eq "+"){$F[6] = "-"}else{$F[6] = "+"};my $part1 = join("\t",$F[0],$F[1],$F[2],$F[3],$F[4],$F[5],$F[6],$F[7],$F[8]);print $part1."\n"' > ! AS.gff |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment