Created
January 31, 2016 16:48
-
-
Save naphthalene/9459d3824dc3eb6d0d4a to your computer and use it in GitHub Desktop.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
efetch -db protein "ybfE" -format gpc -mode xml | xtract -insd complete CDS coded_by | awk '{match($0,"([A-Z0-9\\.]+)\\t([A-Z0-9\\.]+):([0-9]+)\\.\\.([0-9]+)",a)}END{print a[1], a[2], a[3], a[4]}' | tee output.txt |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment