How to run DCM4CHEE on CentOS machine without JBOSS server

CentOS7-DCM4CHEE.md

DCM4CHEE on CentOS machine

This Gist shows how to set up a CentOS machine to run a functional DCM4CHEE instance.

Getting CentOS 7 x86_64

Native

1. download the desire iso at CentOS.org
2. create a boot drive
3. install it

Vagrant

1. Download centos7 x86_64 Box
2. Download Vagrant a. to download Vagrant for Debian, Windows, CentOS and MacOSX go to Vagrant.com b. to install vagrant via command line:

• Debian: apt install vagrant -y
• Windows: choco install vagrant
• CentOs: yum install vagrant -y
• MacOSX: Download, verify, and install VirtualBox and its extension pack:

brew install Caskroom/cask/virtualbox && brew install Caskroom/cask/virtualbox-extension-pack

Download, verify, and install Vagrant and Vagrant-Manager:

brew install Caskroom/cask/vagrant && brew install Caskroom/cask/vagrant-manager

if yout dont have the respective package manager for your system:

• Windows OS: Chocolatey package manager. To install Chocolatey on Windows use the following code on your terminal, it can be on cmd:

@"%SystemRoot%\System32\WindowsPowerShell\v1.0\powershell.exe" -NoProfile -InputFormat None -ExecutionPolicy Bypass -Command "iex ((New-Object System.Net.WebClient).DownloadString('https://chocolatey.org/install.ps1'))" && SET "PATH=%PATH%;%ALLUSERSPROFILE%\chocolatey\bin"

or with powershell:

Set-ExecutionPolicy AllSigned; iex ((New-Object System.Net.WebClient).DownloadString('https://chocolatey.org/install.ps1'))

• Mac OSX: Homebrew package manager. To install Homebrew on Mac use the following code on your terminal:

/usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"

3. Create a folder to install the CentOS 7 machine:

• bash: mkdir ~/vagrant/centos7
• powershell: mkdir $env:userprofile/vagrant/centos7
• cmd: mkdir "%userprofile%"/vagrant/centos7

4. Move the downloaded box into new folder and openit:

• bash:

mv centos-7.0-x86_64.box ~/vagrant/centos7/entos-7.0-x86_64.box && cd ~/vagrant/centos7

• powershell:

(move-item "$env:userprofile/Downloads/centos-7.0-x86_64.box" "$env:userprofile/vagrant/centos7/centos-7.0-x86_64.box") and (cd $env:userprofile/vagrant/centos7/)

• cdm:

move-item "$env:userprofile/Downloads/centos-7.0-x86_64.box" "$env:userprofile/vagrant/centos7/centos-7.0-x86_64.box" && cd $env:userprofile/vagrant/centos7/

5. Add the centos7 box with vagrant:

• bash/powershell/cdm:vagrant box add centos-7.0-x86_64.box --name centos7

6. Start the Vagrantfile:

• bash/powerhsell/cdm: vagrant init

7. Edit Vagrantfile with any text editor:

• bash:

nano ~/vagrant/centos7/Vagrantfile

• powershell:

Get-Content "$env:userprofile"/vagrant/centos7/Vagrantfile

• cmd:

more "%userprofile%"/vagrant/centos7/Vagrantfile

at file, replace: config.vm.box = "base" with: config.vm.box = "centos7"

also, uncomment: config.vm.network = "forwarded_port", guest: 80, host: 8080

add the line: config.vm.network = "forwarded_port", guest: 8000, host: 8000

and save it.

8. Start virtual machine: vagrant up
9. login with ssh command: vagrant ssh
10. update and upgrade machine: sudo yum update -y && sudo yum upgrade -y

PostgreSQL

1. Install the postgresql-server package and the "contrib" package:

sudo yum install postgresql-server postgresql-contrib -y

2. Initialize your Postgres database and start PostgreSQL:

sudo postgresql-setup initdb

3. Log as postgres user:

su - postgres

4. Open the HBA configuration and edit host from:

# TYPE  DATABASE        USER            ADDRESS                 METHOD

# "local" is for Unix domain socket connections only
local   all             all                                     peer
# IPv4 local connections:
host    all             all             127.0.0.1/32            ident
# IPv6 local connections:
host    all             all             ::1/128                 ident
# Allow replication connections from localhost, by a user with the
# replication privilege.
#local   replication     postgres                                peer
#host    replication     postgres        127.0.0.1/32            ident
#host    replication     postgres        ::1/128                 ident

to:

# TYPE  DATABASE        USER            ADDRESS                 METHOD

# "local" is for Unix domain socket connections only
local   all             all                                     peer
# IPv4 local connections:
host    all             all             127.0.0.1/32            trust
# IPv6 local connections:
host    all             all             ::1/128                 trust
# Allow replication connections from localhost, by a user with the
# replication privilege.
#local   replication     postgres                                peer
#host    replication     postgres        127.0.0.1/32            trust
#host    replication     postgres        ::1/128                 trust

5. Start and enable PostgreSQL:

sudo systemctl start postgresql && sudo systemctl enable postgresql

6. Configure PostgreSQL to start on boot:

sudo systemctl enable postgresql

7. Change the postgres user’s Linux password:

sudo passwd postgres

8. Set a password for the postgres database user:

psql -d template1 -c "ALTER USER postgres WITH PASSWORD 'newpassword';"

DCM4CHEE

Java

1. Install Java SE 8: sudo yum install java-1.8.0-openjdk -y
2. Install Java Development Package: sudo yum install java-1.8.0-openjdk-devel -y

DCM4CHEE Binaries

1. Create a folder to alocate files:

mkdir ~/dcm4chee && cd ~/dcm4chee

2. Download binaries for dcm4chee

• 2.18:

wget https://ufpr.dl.sourceforge.net/project/dcm4che/dcm4chee/2.18.3/dcm4chee-2.18.3-psql.zip

• 5.11:

wget https://ufpr.dl.sourceforge.net/project/dcm4che/dcm4chee-arc-light5/5.11.0/dcm4chee-arc-5.11.0-psql.zip

3. Unzip files

• 2.18:

unzip dcm4che-2.18.3-psql.zip

• 5.11:

unzip dcm4chee-arc-5.11.0-psql.zip

4. Create a DC4CHEE database on PostgreSQL:

createdb -h localhost -U postgres dcm4chee

5. Setup $DCM4CHEE_ARC variable

• 2.18:

export DCM4CHEE_ARC = ~/dcm4chee/dcm4che-2.18.3-psql

• 5.11:

export DCM4CHEE_ARC = ~/dcm4chee/dcm4chee-arc-5.11.0-psql

6. Create tables and indexes for DCM$CHEE datatable on PostgreSQL

• 2.18:

psql -h localhost dcm4chee postgres < $DCM4CHEE_ARC/sql/create-psql.sql

• 5.11:

psql -h localhost dcm4chee postgres < $DCM4CHEE_ARC/sql/create-psql.sql
psql -h localhost dcm4chee postgres < $DCM4CHEE_ARC/sql/create-fk-index.sql

DICOM Toolkit & Library

1. Download and unzip binaries

• 2.0.29:

cd ~/dcm4chee
wget https://ufpr.dl.sourceforge.net/project/dcm4che/dcm4che2/2.0.29/dcm4che-2.0.29-bin.zip
unzip dcm4che-2.0.29-bin.zip

• 5.11:

cd ~/dcm4chee
wget https://ufpr.dl.sourceforge.net/project/dcm4che/dcm4che3/5.11.0/dcm4che-5.11.0-bin.zip
unzip dcm4che-5.11.0-bin.zip

• Official Documentation at github/dcm4chee

I am having problems with the command, export DCM4CHEE_ARC = ~ / dcm4chee / dcm4che-2.18.3-psql

the message that appears: bash: export: `/root/dcm4chee/dcm4chee-2.18.3-psql ': is not a valid identifier, what can it be?

I am having problems with the command, export DCM4CHEE_ARC = ~ / dcm4chee / dcm4che-2.18.3-psql

the message that appears: bash: export: `/root/dcm4chee/dcm4chee-2.18.3-psql ': is not a valid identifier, what can it be?

It's should be export DCM4CHEE_ARC=~ / dcm4chee / dcm4che-2.18.3-psql

Do you have a video about installation?