Skip to content

Instantly share code, notes, and snippets.

@natanaelfneto

natanaelfneto/CentOS7-DCM4CHEE.md

Last active October 5, 2021 08:09
Show Gist options
  • Save natanaelfneto/35fbee4ee839fa1386ee88509fa238ea to your computer and use it in GitHub Desktop.
Save natanaelfneto/35fbee4ee839fa1386ee88509fa238ea to your computer and use it in GitHub Desktop.
Download ZIP
How to run DCM4CHEE on CentOS machine without JBOSS server
Raw
CentOS7-DCM4CHEE.md

DCM4CHEE on CentOS machine

This Gist shows how to set up a CentOS machine to run a functional DCM4CHEE instance.

Getting CentOS 7 x86_64

Native

  1. download the desire iso at CentOS.org
  2. create a boot drive
  3. install it

Vagrant

  1. Download centos7 x86_64 Box
  2. Download Vagrant a. to download Vagrant for Debian, Windows, CentOS and MacOSX go to Vagrant.com b. to install vagrant via command line:
  • Debian: apt install vagrant -y
  • Windows: choco install vagrant
  • CentOs: yum install vagrant -y
  • MacOSX: Download, verify, and install VirtualBox and its extension pack:
brew install Caskroom/cask/virtualbox && brew install Caskroom/cask/virtualbox-extension-pack

Download, verify, and install Vagrant and Vagrant-Manager:

brew install Caskroom/cask/vagrant && brew install Caskroom/cask/vagrant-manager

if yout dont have the respective package manager for your system:

  • Windows OS: Chocolatey package manager. To install Chocolatey on Windows use the following code on your terminal, it can be on cmd:
@"%SystemRoot%\System32\WindowsPowerShell\v1.0\powershell.exe" -NoProfile -InputFormat None -ExecutionPolicy Bypass -Command "iex ((New-Object System.Net.WebClient).DownloadString('https://chocolatey.org/install.ps1'))" && SET "PATH=%PATH%;%ALLUSERSPROFILE%\chocolatey\bin"

or with powershell:

Set-ExecutionPolicy AllSigned; iex ((New-Object System.Net.WebClient).DownloadString('https://chocolatey.org/install.ps1'))
  • Mac OSX: Homebrew package manager. To install Homebrew on Mac use the following code on your terminal:
/usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
  1. Create a folder to install the CentOS 7 machine:
  • bash: mkdir ~/vagrant/centos7
  • powershell: mkdir $env:userprofile/vagrant/centos7
  • cmd: mkdir "%userprofile%"/vagrant/centos7
  1. Move the downloaded box into new folder and openit:
  • bash:
mv centos-7.0-x86_64.box ~/vagrant/centos7/entos-7.0-x86_64.box && cd ~/vagrant/centos7
  • powershell:
(move-item "$env:userprofile/Downloads/centos-7.0-x86_64.box" "$env:userprofile/vagrant/centos7/centos-7.0-x86_64.box") and (cd $env:userprofile/vagrant/centos7/)
  • cdm:
move-item "$env:userprofile/Downloads/centos-7.0-x86_64.box" "$env:userprofile/vagrant/centos7/centos-7.0-x86_64.box" && cd $env:userprofile/vagrant/centos7/
  1. Add the centos7 box with vagrant:
  • bash/powershell/cdm:vagrant box add centos-7.0-x86_64.box --name centos7
  1. Start the Vagrantfile:
  • bash/powerhsell/cdm: vagrant init
  1. Edit Vagrantfile with any text editor:
  • bash:
nano ~/vagrant/centos7/Vagrantfile
  • powershell:
Get-Content "$env:userprofile"/vagrant/centos7/Vagrantfile
  • cmd:
more "%userprofile%"/vagrant/centos7/Vagrantfile

at file, replace: config.vm.box = "base" with: config.vm.box = "centos7"

also, uncomment: config.vm.network = "forwarded_port", guest: 80, host: 8080

add the line: config.vm.network = "forwarded_port", guest: 8000, host: 8000

and save it.

  1. Start virtual machine: vagrant up
  2. login with ssh command: vagrant ssh
  3. update and upgrade machine: sudo yum update -y && sudo yum upgrade -y

PostgreSQL

  1. Install the postgresql-server package and the "contrib" package:
sudo yum install postgresql-server postgresql-contrib -y
  1. Initialize your Postgres database and start PostgreSQL:
sudo postgresql-setup initdb
  1. Log as postgres user:
su - postgres
  1. Open the HBA configuration and edit host from:
# TYPE  DATABASE        USER            ADDRESS                 METHOD

# "local" is for Unix domain socket connections only
local   all             all                                     peer
# IPv4 local connections:
host    all             all             127.0.0.1/32            ident
# IPv6 local connections:
host    all             all             ::1/128                 ident
# Allow replication connections from localhost, by a user with the
# replication privilege.
#local   replication     postgres                                peer
#host    replication     postgres        127.0.0.1/32            ident
#host    replication     postgres        ::1/128                 ident

to:

# TYPE  DATABASE        USER            ADDRESS                 METHOD

# "local" is for Unix domain socket connections only
local   all             all                                     peer
# IPv4 local connections:
host    all             all             127.0.0.1/32            trust
# IPv6 local connections:
host    all             all             ::1/128                 trust
# Allow replication connections from localhost, by a user with the
# replication privilege.
#local   replication     postgres                                peer
#host    replication     postgres        127.0.0.1/32            trust
#host    replication     postgres        ::1/128                 trust
  1. Start and enable PostgreSQL:
sudo systemctl start postgresql && sudo systemctl enable postgresql
  1. Configure PostgreSQL to start on boot:
sudo systemctl enable postgresql
  1. Change the postgres user’s Linux password:
sudo passwd postgres
  1. Set a password for the postgres database user:
psql -d template1 -c "ALTER USER postgres WITH PASSWORD 'newpassword';"

DCM4CHEE

Java

  1. Install Java SE 8: sudo yum install java-1.8.0-openjdk -y
  2. Install Java Development Package: sudo yum install java-1.8.0-openjdk-devel -y

DCM4CHEE Binaries

  1. Create a folder to alocate files:
mkdir ~/dcm4chee && cd ~/dcm4chee
  1. Download binaries for dcm4chee
  • 2.18:
wget https://ufpr.dl.sourceforge.net/project/dcm4che/dcm4chee/2.18.3/dcm4chee-2.18.3-psql.zip
  • 5.11:
wget https://ufpr.dl.sourceforge.net/project/dcm4che/dcm4chee-arc-light5/5.11.0/dcm4chee-arc-5.11.0-psql.zip
  1. Unzip files
  • 2.18:
unzip dcm4che-2.18.3-psql.zip
  • 5.11:
unzip dcm4chee-arc-5.11.0-psql.zip
  1. Create a DC4CHEE database on PostgreSQL:
createdb -h localhost -U postgres dcm4chee
  1. Setup $DCM4CHEE_ARC variable
  • 2.18:
export DCM4CHEE_ARC = ~/dcm4chee/dcm4che-2.18.3-psql
  • 5.11:
export DCM4CHEE_ARC = ~/dcm4chee/dcm4chee-arc-5.11.0-psql
  1. Create tables and indexes for DCM$CHEE datatable on PostgreSQL
  • 2.18:
psql -h localhost dcm4chee postgres < $DCM4CHEE_ARC/sql/create-psql.sql
  • 5.11:
psql -h localhost dcm4chee postgres < $DCM4CHEE_ARC/sql/create-psql.sql
psql -h localhost dcm4chee postgres < $DCM4CHEE_ARC/sql/create-fk-index.sql

DICOM Toolkit & Library

  1. Download and unzip binaries
  • 2.0.29:
cd ~/dcm4chee
wget https://ufpr.dl.sourceforge.net/project/dcm4che/dcm4che2/2.0.29/dcm4che-2.0.29-bin.zip
unzip dcm4che-2.0.29-bin.zip
  • 5.11:
cd ~/dcm4chee
wget https://ufpr.dl.sourceforge.net/project/dcm4che/dcm4che3/5.11.0/dcm4che-5.11.0-bin.zip
unzip dcm4che-5.11.0-bin.zip
@rafacs83
Copy link

I am having problems with the command, export DCM4CHEE_ARC = ~ / dcm4chee / dcm4che-2.18.3-psql

the message that appears: bash: export: `/root/dcm4chee/dcm4chee-2.18.3-psql ': is not a valid identifier, what can it be?

@jangtrung
Copy link

I am having problems with the command, export DCM4CHEE_ARC = ~ / dcm4chee / dcm4che-2.18.3-psql

the message that appears: bash: export: `/root/dcm4chee/dcm4chee-2.18.3-psql ': is not a valid identifier, what can it be?

It's should be export DCM4CHEE_ARC=~ / dcm4chee / dcm4che-2.18.3-psql

@Emrullah-ACAR
Copy link

Do you have a video about installation?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment