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October 29, 2018 19:19
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Example of a proposed bioschemas example
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{ | |
"@context": [ | |
"http://schema.org", | |
"http://bioschemas.org/context.jsonld" | |
], | |
"@id": "http://www.alliancegenome.org/gene/ZFIN:ZDB-GENE-001103-2", | |
"@type": ["BioChemEntity", "Gene"], | |
"identifier": "ZFIN:ZDB-GENE-001103-2", | |
"version": "1.8", | |
"license": "CC BY 4.0", | |
"typeUrl": "http://www.sequenceontology.org/browser/current_svn/term/SO:0000704", | |
"name": "sox9b", | |
"url": "https://www.alliancegenome.org/gene/ZFIN:ZDB-GENE-001103-2", | |
"alternateName": [ | |
"fb18d01", | |
"Wu:fb18d01", | |
"SRY (sex determining region Y)-box 9b" | |
], | |
"isContainedIn": { | |
"@type": "Organism", | |
"identifier": "NCBI:txid7955", | |
"name": "Danio rerio", | |
"alternateNames": ["Zebrafish"], | |
"url": "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=7955" | |
}, | |
"description": "SRY (sex determining region Y)-box 9b: Predicted to have DNA-binding activity transcription activator activity, RNA polymerase II-specific; involved in several processes, including animal organ development, embryonic morphogenesis, and hepaticobiliary system development; predicted to localize to the nucleus.", | |
"keywords": "gene ZFIN sox9b fb18d01 wu:fb18d01 Danio rerio ZFIN:ZDB-GENE-001103-2", | |
"includedInDataCatalog": ["http://www.alliancegenome.org"], | |
"distribution":[ | |
{ | |
"@type":"DataDownload", | |
"encodingFormat":"CSV", | |
"contentUrl":"https://www.alliancegenome.org/downloads" | |
} | |
], | |
"subFeature": { | |
"@type": "mRNA", | |
"typeURL": "http://www.sequenceontology.org/browser/current_svn/term/SO:0000234", | |
"name": "subs-4", | |
"hasPart": { | |
"@type": "PropertyValue", | |
"propertyID": "Sequence", | |
"value": "Y47D3B.1" | |
} | |
}, | |
"creator":{ | |
"@type":"Organization", | |
"url": "https://www.alliancegenome.org", | |
"name":"Alliance of Genome Resources", | |
"contactPoint":{ | |
"@type":"ContactPoint", | |
"contactType": "customer service", | |
"email":"[email protected]" | |
} | |
}, | |
"seeAlso": [ | |
"https://www.ncbi.nlm.nih.gov/gene/60642", | |
"https://zfin.org/action/marker/citation-list/ZDB-GENE-001103-2" | |
], | |
"sameAs": [ | |
"http://www.identifiers.org/ZFIN:ZDB-GENE-001103-2", | |
"https://zfin.org/ZDB-GENE-001103-2" | |
], | |
"additionalProperty":{ | |
"@type":"http://semanticscience.org/resource/SIO/_000983", | |
"name":"disease association", | |
"value":{ | |
"@type": ["StructuredValue","MedicalCondition"], | |
"name":"Leukemia, chronic myeloid (CML)", | |
"code":{ | |
"@type":"MedicalCode", | |
"code":"608232", | |
"codingSystemn":"OMIM" | |
}, | |
"sameAs":"http://uniprot.org/diseases/DI=03735" | |
} | |
} | |
} | |
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