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December 12, 2018 11:07
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cyclom_xia2
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| xia2/conftest.py | |
| F 25:0 ccp4 - B (7) | |
| F 46:0 xds - B (6) | |
| xia2/XIA2Version.py | |
| F 14:0 get_git_revision - C (15) | |
| xia2/Applications/xia2_helpers.py | |
| F 9:0 process_one_sweep - B (10) | |
| xia2/Applications/xia2_main.py | |
| F 69:0 get_command_line - B (10) | |
| F 25:0 check_environment - B (6) | |
| xia2/Applications/xia2ccp4i.py | |
| M 157:2 Xia2Info.__init__ - B (9) | |
| M 78:2 ProjectMaker.__call__ - B (7) | |
| xia2/Applications/xia2setup.py | |
| F 208:0 print_sweeps - F (48) | |
| F 65:0 is_image_name - C (11) | |
| F 114:0 get_template - B (9) | |
| F 172:0 visit - B (9) | |
| F 458:0 get_sweeps - B (9) | |
| F 518:0 write_xinfo - B (9) | |
| F 561:0 run - B (9) | |
| xia2/Driver/DefaultDriver.py | |
| M 416:2 DefaultDriver.close_wait - C (11) | |
| M 218:2 DefaultDriver.add_command_line - B (6) | |
| xia2/Driver/DriverFactory.py | |
| M 56:2 _DriverFactory.Driver - B (7) | |
| xia2/Driver/DriverHelper.py | |
| F 48:0 script_writer - C (15) | |
| F 268:0 error_python_traceback - C (12) | |
| F 327:0 executable_exists - C (12) | |
| F 299:0 check_return_code - B (7) | |
| F 192:0 error_missing_library - B (6) | |
| F 248:0 error_abrt - B (6) | |
| xia2/Driver/PythonDriver.py | |
| M 28:2 PythonDriver.start - B (9) | |
| xia2/Driver/QSubDriver.py | |
| M 107:2 QSubDriver.close - C (16) | |
| xia2/Driver/SimpleDriver.py | |
| M 35:2 SimpleDriver.start - B (9) | |
| xia2/Experts/FindImages.py | |
| F 277:0 headers2sweeps - C (12) | |
| F 48:0 template_regex - B (6) | |
| F 99:0 image2template_old - B (6) | |
| F 403:0 digest_template - B (6) | |
| xia2/Experts/LatticeExpert.py | |
| F 97:0 ConstrainLattice - B (7) | |
| F 118:0 SortLattices - B (6) | |
| xia2/Experts/MatrixExpert.py | |
| F 203:0 transmogrify_matrix - B (6) | |
| xia2/Experts/ResolutionExperts.py | |
| F 778:0 digest - C (17) | |
| F 368:0 xds_integrate_header_read - C (15) | |
| F 757:0 ice - C (15) | |
| F 619:0 outlier - C (11) | |
| F 229:0 main - B (8) | |
| F 523:0 find_blank - B (8) | |
| F 590:0 bin_o_tron0 - B (6) | |
| F 701:0 bin_o_tron - B (6) | |
| xia2/Experts/WedgeExpert.py | |
| F 15:0 digest_wedges - C (19) | |
| xia2/Handlers/CIF.py | |
| M 118:2 _CIFHandler.collate_audit_information - B (8) | |
| M 74:2 _CIFHandler.set_wavelengths - B (6) | |
| xia2/Handlers/Citations.py | |
| M 23:2 _Citations.__init__ - B (9) | |
| M 89:2 _Citations.find_citations - B (6) | |
| xia2/Handlers/CommandLine.py | |
| M 119:2 _CommandLine.setup - F (77) | |
| M 448:2 _CommandLine._read_pipeline - C (17) | |
| F 52:0 unroll_datasets - B (8) | |
| C 79:0 _CommandLine - B (8) | |
| F 33:0 load_datablock - B (6) | |
| M 103:2 _CommandLine.get_command_line - B (6) | |
| xia2/Handlers/Files.py | |
| M 107:2 _FileHandler.cleanup - B (9) | |
| F 38:0 get_xds_commands - B (7) | |
| xia2/Handlers/PipelineSelection.py | |
| F 17:0 check - C (11) | |
| xia2/Handlers/Streams.py | |
| M 113:2 _Stream.write - C (12) | |
| xia2/Handlers/Syminfo.py | |
| M 52:2 _Syminfo._parse_symop - C (11) | |
| M 184:2 _Syminfo.get_subgroups - B (6) | |
| xia2/Handlers/XInfo.py | |
| M 112:2 XInfo._parse_crystal - F (58) | |
| M 69:2 XInfo._parse_project - C (13) | |
| C 16:0 XInfo - C (11) | |
| M 21:2 XInfo.__init__ - B (6) | |
| xia2/Interfaces/ISPyB/ISPyBXmlHandler.py | |
| M 294:2 _ISPyBXmlHandler.json_object - C (18) | |
| M 114:2 _ISPyBXmlHandler.write_xml - C (17) | |
| xia2/Interfaces/ISPyB/__init__.py | |
| F 28:0 xia2_to_json_object - B (8) | |
| xia2/Modules/AnalyseMyIntensities.py | |
| M 58:2 AnalyseMyIntensities.compute_average_cell - C (15) | |
| xia2/Modules/CCP4InterRadiationDamageDetector.py | |
| M 86:2 CCP4InterRadiationDamageDetector.detect - B (6) | |
| xia2/Modules/CctbxFrenchWilson.py | |
| C 17:0 french_wilson - C (12) | |
| M 18:2 french_wilson.__init__ - C (12) | |
| xia2/Modules/DeltaCcHalf.py | |
| F 134:0 run - C (16) | |
| M 32:2 delta_cc_half.__init__ - B (8) | |
| xia2/Modules/DoseAccumulate.py | |
| F 63:0 accumulate - B (6) | |
| xia2/Modules/FindFreeFlag.py | |
| F 17:0 FindFreeFlag - B (9) | |
| xia2/Modules/Mtzdump.py | |
| M 43:2 Mtzdump.dump - B (10) | |
| xia2/Modules/MultiCrystalAnalysis.py | |
| F 506:0 run - C (20) | |
| M 236:2 multi_crystal_analysis.plot_cc_matrix - B (9) | |
| C 65:0 separate_unmerged - B (8) | |
| M 66:2 separate_unmerged.__init__ - B (8) | |
| F 13:0 get_scipy - B (6) | |
| xia2/Modules/TTT.py | |
| F 80:0 player_has_won - B (9) | |
| F 126:0 ttt - B (8) | |
| xia2/Modules/UnitCellErrors.py | |
| M 64:2 _refinery.gradients - B (8) | |
| M 11:2 _refinery.__init__ - B (6) | |
| xia2/Modules/UnpackByteOffset.py | |
| F 101:0 unpackbyteoffset - B (9) | |
| F 135:0 sumbyteoffset - B (7) | |
| xia2/Modules/XDS_ASCII.py | |
| F 19:0 remove_misfits - B (9) | |
| xia2/Modules/Analysis/__init__.py | |
| F 84:0 rmerge_vs_batch - B (9) | |
| F 133:0 i_sig_i_vs_batch - B (8) | |
| F 60:0 scales_vs_batch - B (7) | |
| xia2/Modules/Indexer/DialsIndexer.py | |
| M 231:2 DialsIndexer._index_prepare - E (32) | |
| M 418:2 DialsIndexer._index - D (28) | |
| M 629:2 DialsIndexer._do_indexing - C (12) | |
| M 707:2 DialsIndexer.get_solution - B (9) | |
| M 171:2 DialsIndexer._index_select_images_i - B (6) | |
| xia2/Modules/Indexer/IndexerFactory.py | |
| F 48:0 IndexerForXSweep - C (17) | |
| F 155:0 Indexer - B (10) | |
| xia2/Modules/Indexer/IndexerSelectImages.py | |
| F 73:0 index_select_image_wedges_user - B (8) | |
| F 34:0 index_select_images_user - B (6) | |
| xia2/Modules/Indexer/LabelitIndexer.py | |
| M 103:2 LabelitIndexer._index - E (31) | |
| M 377:2 LabelitIndexer.get_solution - B (8) | |
| M 328:2 LabelitIndexer._index_finish - B (7) | |
| C 38:0 LabelitIndexer - B (6) | |
| xia2/Modules/Indexer/LabelitIndexerII.py | |
| M 166:2 LabelitIndexerII._index - E (36) | |
| C 104:0 LabelitIndexerII - B (10) | |
| xia2/Modules/Indexer/MosflmCheckIndexerSolution.py | |
| F 71:0 mosflm_check_indexer_solution - C (20) | |
| xia2/Modules/Indexer/MosflmIndexer.py | |
| M 102:2 MosflmIndexer._index - D (27) | |
| C 43:0 MosflmIndexer - B (7) | |
| M 342:2 MosflmIndexer._index_finish - B (7) | |
| xia2/Modules/Indexer/MosflmIntegrateAbsences.py | |
| F 8:0 measure - B (10) | |
| xia2/Modules/Indexer/XDSIndexer.py | |
| M 474:2 XDSIndexer._index - D (24) | |
| M 273:2 XDSIndexer._index_prepare - D (23) | |
| M 169:2 XDSIndexer._index_remove_masked_regions - C (11) | |
| M 201:2 XDSIndexer._index_select_images_i - B (8) | |
| C 47:0 XDSIndexer - B (7) | |
| M 134:2 XDSIndexer.Idxref - B (7) | |
| M 637:2 XDSIndexer._index_finish - B (7) | |
| xia2/Modules/Indexer/XDSIndexerII.py | |
| M 109:2 XDSIndexerII._index - D (28) | |
| M 304:2 XDSIndexerII.decide_i_or_ii - B (9) | |
| C 35:0 XDSIndexerII - B (7) | |
| M 47:2 XDSIndexerII._index_select_images_ii - B (7) | |
| xia2/Modules/Indexer/XDSIndexerSum.py | |
| M 40:2 XDSIndexerSum._index_select_images - B (8) | |
| M 117:2 XDSIndexerSum._modify_xparm_xds - B (6) | |
| xia2/Modules/Integrater/DialsIntegrater.py | |
| M 391:2 DialsIntegrater._integrate_finish - C (20) | |
| M 251:2 DialsIntegrater._integrate - C (12) | |
| M 532:2 DialsIntegrater._integrate_select_images_wedges - B (6) | |
| xia2/Modules/Integrater/IntegraterFactory.py | |
| F 106:0 Integrater - C (20) | |
| F 32:0 IntegraterForXSweep - C (16) | |
| xia2/Modules/Integrater/MosflmIntegrater.py | |
| M 431:2 MosflmIntegrater._mosflm_parallel_integrate - E (40) | |
| M 200:2 MosflmIntegrater._mosflm_integrate - E (32) | |
| M 101:2 MosflmIntegrater._integrate - B (10) | |
| C 39:0 MosflmIntegrater - B (9) | |
| M 165:2 MosflmIntegrater._integrate_finish - B (6) | |
| xia2/Modules/Integrater/XDSIntegrater.py | |
| M 434:2 XDSIntegrater._integrate_finish - F (58) | |
| M 297:2 XDSIntegrater._integrate - C (12) | |
| M 203:2 XDSIntegrater._integrate_prepare - C (11) | |
| M 163:2 XDSIntegrater.Correct - B (7) | |
| C 52:0 XDSIntegrater - B (6) | |
| xia2/Modules/PyChef/__init__.py | |
| F 383:0 run - C (17) | |
| M 127:2 Statistics.completeness_vs_dose_str - B (10) | |
| M 56:2 Statistics.__init__ - B (7) | |
| xia2/Modules/Refiner/DialsRefiner.py | |
| M 68:2 DialsRefiner._refine - C (16) | |
| xia2/Modules/Refiner/MosflmRefiner.py | |
| M 42:2 MosflmRefiner._refine - D (27) | |
| M 383:2 MosflmRefiner._mosflm_refine_cell - C (19) | |
| C 23:0 MosflmRefiner - B (7) | |
| M 277:2 MosflmRefiner._mosflm_test_refine_cell - B (7) | |
| xia2/Modules/Refiner/RefinerFactory.py | |
| F 45:0 Refiner - C (16) | |
| xia2/Modules/Refiner/XDSRefiner.py | |
| M 29:2 XDSRefiner._refine_prepare - C (13) | |
| xia2/Modules/Scaler/CCP4ScalerA.py | |
| M 143:2 CCP4ScalerA._scale_prepare - F (75) | |
| M 828:2 CCP4ScalerA._scale - F (55) | |
| C 38:0 CCP4ScalerA - C (12) | |
| M 1279:2 CCP4ScalerA.get_batch_to_dose - B (8) | |
| M 91:2 CCP4ScalerA._updated_aimless - B (6) | |
| xia2/Modules/Scaler/CCP4ScalerHelpers.py | |
| F 71:0 ersatz_resolution - C (16) | |
| M 331:2 CCP4ScalerHelper.pointless_indexer_multisweep - C (11) | |
| F 133:0 compute_resolution - B (9) | |
| M 268:2 CCP4ScalerHelper.pointless_indexer_jiffy - B (8) | |
| xia2/Modules/Scaler/CommonScaler.py | |
| M 1114:2 CommonScaler._update_scaled_unit_cell - D (21) | |
| M 966:2 CommonScaler._compute_scaler_statistics - C (17) | |
| M 43:2 CommonScaler._sort_together_data_ccp4 - C (15) | |
| M 902:2 CommonScaler._estimate_resolution_limit - C (13) | |
| M 240:2 CommonScaler._sort_together_data_xds - B (10) | |
| M 696:2 CommonScaler._scale_finish_export_shelxt - B (10) | |
| F 1234:0 anomalous_probability_plot - B (8) | |
| C 32:0 CommonScaler - B (7) | |
| M 492:2 CommonScaler._scale_finish - B (7) | |
| M 398:2 CommonScaler._sort_together_data_xds_one_sweep - B (6) | |
| M 764:2 CommonScaler._scale_finish_chunk_6_add_free_r - B (6) | |
| xia2/Modules/Scaler/ScalerFactory.py | |
| F 22:0 Scaler - C (16) | |
| xia2/Modules/Scaler/XDSScalerA.py | |
| M 862:2 XDSScalerA._scale - F (56) | |
| M 230:2 XDSScalerA._scale_prepare - F (42) | |
| C 41:0 XDSScalerA - C (11) | |
| M 154:2 XDSScalerA._pointless_indexer_jiffy - B (8) | |
| M 1299:2 XDSScalerA.get_batch_to_dose - B (8) | |
| xia2/Modules/Scaler/XDSScalerHelpers.py | |
| M 86:2 XDSScalerHelper.split_xscale_ascii_file - B (10) | |
| M 172:2 XDSScalerHelper.limit_batches - B (8) | |
| M 65:2 XDSScalerHelper.parse_xscale_ascii_wavelength - B (6) | |
| xia2/Modules/Scaler/rebatch.py | |
| F 28:0 rebatch - E (31) | |
| F 120:0 copy_r_file - C (14) | |
| xia2/Modules/Scaler/tools.py | |
| F 67:0 add_dose_time_to_mtz - B (10) | |
| xia2/Modules/Scaler/DialsScaler.py | |
| M 95:2 DialsScaler._scale_prepare - F (65) | |
| M 610:2 DialsScaler._scale - E (33) | |
| C 32:0 DialsScaler - C (12) | |
| M 60:2 DialsScaler._updated_dials_scaler - B (9) | |
| M 949:2 DialsScalerHelper.dials_symmetry_indexer_jiffy - B (7) | |
| F 1012:0 decide_correct_lattice_using_refiner - B (6) | |
| xia2/Modules/Xia2html/Canary.py | |
| M 809:2 Table.__renderRow - B (9) | |
| F 1184:0 MakeLink - B (7) | |
| M 862:2 Table.renderContent - B (7) | |
| xia2/Modules/Xia2html/Magpie.py | |
| M 331:2 Block.add - B (9) | |
| M 147:2 Magpie.__process - B (8) | |
| xia2/Modules/Xia2html/baubles.py | |
| F 995:0 plainTextMarkup - F (42) | |
| F 1309:0 baubles - D (22) | |
| F 450:0 writeAdvancedLogfileFolder - C (14) | |
| F 1236:0 polarrfn_plot - B (9) | |
| F 609:0 writeBanner - B (7) | |
| F 1159:0 summariseGeneric - B (7) | |
| M 665:2 javaloggraph.__init__ - B (7) | |
| F 340:0 writeLoggraphFolder - B (6) | |
| xia2/Modules/Xia2html/smartie.py | |
| F 2836:0 parselog - E (32) | |
| F 3113:0 summarise - D (25) | |
| M 1657:2 table.show - D (21) | |
| F 3506:0 tokenise - C (19) | |
| F 3325:0 strip_logfile_html - C (16) | |
| M 2641:2 patternmatch.isshelxbanner - B (8) | |
| F 3476:0 retrieve - B (7) | |
| M 166:2 tablebuffer.append - B (7) | |
| M 1509:2 table.definegraph - B (7) | |
| F 3214:0 copyfragment - B (6) | |
| F 3438:0 salvage_tag_data - B (6) | |
| M 571:2 logfile.fragment_to_program - B (6) | |
| M 1468:2 table.add_data - B (6) | |
| xia2/Modules/MultiCrystal/ScaleAndMerge.py | |
| M 321:2 MultiCrystalScale.__init__ - D (25) | |
| M 659:2 MultiCrystalScale.report - C (15) | |
| M 229:2 DataManager.reflections_as_miller_arrays - C (11) | |
| M 457:2 MultiCrystalScale.unit_cell_clustering - B (10) | |
| M 610:2 MultiCrystalScale.multi_crystal_analysis - B (9) | |
| M 934:2 Scale.estimate_resolution_limit - B (9) | |
| C 320:0 MultiCrystalScale - B (8) | |
| M 891:2 Scale.scale - B (8) | |
| M 502:2 MultiCrystalScale.unit_cell_histogram - B (6) | |
| xia2/Modules/MultiCrystal/__init__.py | |
| M 126:2 multi_crystal_analysis.__init__ - B (9) | |
| C 61:0 separate_unmerged - B (7) | |
| M 63:2 separate_unmerged.__init__ - B (7) | |
| M 207:2 multi_crystal_analysis.cluster_info - B (7) | |
| F 16:0 get_scipy - B (6) | |
| xia2/Schema/Sweep.py | |
| M 127:2 Sweep.update - B (6) | |
| xia2/Schema/XCrystal.py | |
| M 427:2 XCrystal.get_output - D (29) | |
| M 368:2 XCrystal.from_dict - D (27) | |
| M 333:2 XCrystal.to_dict - C (15) | |
| F 255:0 format_statistics - C (11) | |
| M 582:2 XCrystal.summarise - B (10) | |
| M 878:2 XCrystal._get_scaler - B (8) | |
| M 688:2 XCrystal.set_ha_info - B (6) | |
| M 725:2 XCrystal.add_wavelength - B (6) | |
| xia2/Schema/XProject.py | |
| M 154:2 XProject.setup_from_xinfo_file - E (34) | |
| xia2/Schema/XSample.py | |
| M 51:2 XSample.to_dict - B (8) | |
| M 74:2 XSample.from_dict - B (7) | |
| xia2/Schema/XSweep.py | |
| M 141:2 XSweep.__init__ - D (25) | |
| M 391:2 XSweep.from_dict - C (16) | |
| M 523:2 XSweep.summarise - C (13) | |
| M 484:2 XSweep.get_output - B (10) | |
| M 726:2 XSweep._get_integrater - B (10) | |
| M 363:2 XSweep.to_dict - B (9) | |
| M 608:2 XSweep._get_indexer - B (6) | |
| xia2/Schema/XWavelength.py | |
| M 101:2 XWavelength.get_output - B (7) | |
| M 68:2 XWavelength.to_dict - B (6) | |
| M 89:2 XWavelength.from_dict - B (6) | |
| xia2/Schema/__init__.py | |
| F 28:0 load_imagesets - E (39) | |
| F 208:0 load_reference_geometries - B (8) | |
| F 13:0 longest_common_substring - B (6) | |
| xia2/Schema/Interfaces/FrameProcessor.py | |
| M 73:2 FrameProcessor.set_frame_wedge - C (12) | |
| M 292:2 FrameProcessor._setup_from_imageset - B (8) | |
| M 268:2 FrameProcessor._setup_from_image - B (6) | |
| xia2/Schema/Interfaces/Indexer.py | |
| M 413:2 Indexer.index - C (20) | |
| M 212:2 Indexer.to_dict - C (12) | |
| M 239:2 Indexer.from_dict - C (12) | |
| M 656:2 Indexer.set_indexer_asserted_lattice - C (12) | |
| xia2/Schema/Interfaces/Integrater.py | |
| M 722:2 Integrater.show_per_image_statistics - E (38) | |
| M 523:2 Integrater.integrate - B (9) | |
| M 140:2 Integrater.to_dict - B (8) | |
| M 161:2 Integrater.from_dict - B (8) | |
| M 665:2 Integrater.set_integrater_reindex_operator - B (6) | |
| xia2/Schema/Interfaces/Refiner.py | |
| M 38:2 Refiner.to_dict - B (10) | |
| M 65:2 Refiner.from_dict - B (10) | |
| xia2/Schema/Interfaces/Scaler.py | |
| M 541:2 Scaler._scale_setup - C (13) | |
| M 273:2 Scaler.from_dict - C (12) | |
| M 238:2 Scaler.to_dict - C (11) | |
| M 504:2 Scaler._scale_setup_integrater - B (8) | |
| xia2/Test/Modules/test_Pychef.py | |
| F 21:0 test_accumulators - C (17) | |
| xia2/Test/Modules/Indexer/test_MosflmIndexer.py | |
| F 8:0 test_mosflm_indexer - C (12) | |
| xia2/Test/Modules/Indexer/test_labelit_indexer.py | |
| F 5:0 test_labelit_indexer - D (24) | |
| xia2/Test/Modules/Indexer/test_labelit_indexer_II.py | |
| F 5:0 test_labelit_indexer_II - C (11) | |
| xia2/Test/Modules/Indexer/test_DIALS_indexer.py | |
| F 10:0 exercise_dials_indexer - C (13) | |
| xia2/Test/Modules/Indexer/test_XDS_indexer.py | |
| F 10:0 exercise_xds_indexer - C (12) | |
| xia2/Test/Modules/Indexer/test_XDS_indexer_II.py | |
| F 10:0 exercise_xds_indexer - C (12) | |
| xia2/Test/Modules/Integrater/test_DialsIntegrater.py | |
| F 10:0 exercise_dials_integrater - C (18) | |
| xia2/Test/Modules/Integrater/test_MosflmIntegrater.py | |
| F 10:0 exercise_mosflm_integrater - C (17) | |
| xia2/Test/Modules/Integrater/test_XDSIntegrater.py | |
| F 10:0 exercise_xds_integrater - D (22) | |
| xia2/Test/Modules/Scaler/test_CCP4ScalerA.py | |
| F 84:0 check_scaler_files_exist - B (6) | |
| xia2/Test/Modules/Scaler/test_XDSScalerA.py | |
| F 84:0 check_scaler_files_exist - B (6) | |
| xia2/Test/Schema/test_XProject.py | |
| F 9:0 exercise_serialization - B (8) | |
| xia2/Test/Wrappers/CCP4/test_blend.py | |
| F 13:0 test_blend_wrapper - C (14) | |
| xia2/Test/Wrappers/Dials/test_dials_wrappers.py | |
| F 10:0 exercise_dials_wrappers - C (13) | |
| xia2/Test/Wrappers/Labelit/testLabelitIndex.py | |
| F 7:0 test_indexing_with_labelit_on_two_images - C (14) | |
| F 37:0 test_indexing_with_labelit_on_multiple_images - C (14) | |
| xia2/Test/Wrappers/Mosflm/test_mosflm.py | |
| F 24:0 test_index_two_images_with_mosflm - B (9) | |
| F 46:0 test_indexing_multiple_images_with_mosflm - B (9) | |
| F 72:0 test_mosflm_refine_cell - B (7) | |
| xia2/Test/regression/__init__.py | |
| F 16:0 check_result - F (65) | |
| F 178:0 generate_tolerant_template - C (17) | |
| xia2/Toolkit/AimlessSurface.py | |
| F 30:0 evaluate_1degree - B (10) | |
| xia2/Toolkit/BackstopMask.py | |
| F 87:0 line_intersect_rectangle - C (12) | |
| M 263:2 BackstopMask.apply_mask_xds - C (11) | |
| F 130:0 equation_of_line - B (10) | |
| F 163:0 work_equation_of_line - B (8) | |
| F 33:0 mmcc - B (7) | |
| xia2/Toolkit/E4.py | |
| F 9:0 E4_mtz - B (6) | |
| xia2/Toolkit/MendBKGINIT.py | |
| F 14:0 recompute_BKGINIT - C (20) | |
| xia2/Toolkit/Merger.py | |
| M 722:2 merger.new_resolution_unmerged_isigma - C (14) | |
| M 810:2 merger.new_resolution_merged_isigma - C (14) | |
| M 482:2 merger.apply_resolution_limit - B (10) | |
| M 649:2 merger.calculate_z2 - B (10) | |
| M 680:2 merger.resolution_rmerge - B (10) | |
| M 897:2 merger.resolution_completeness - B (9) | |
| M 362:2 merger.reindex - B (8) | |
| M 775:2 merger.resolution_unmerged_isigma - B (8) | |
| M 862:2 merger.resolution_merged_isigma - B (8) | |
| M 217:2 merger.__init__ - B (7) | |
| M 436:2 merger.calculate_resolution_ranges - B (7) | |
| M 95:2 unmerged_intensity.merge_anomalous - B (6) | |
| M 172:2 unmerged_intensity.calculate_unmerged_di - B (6) | |
| M 562:2 merger.calculate_rmerge_anomalous - B (6) | |
| xia2/Toolkit/MtzFactory.py | |
| F 168:0 mtz_dump - B (7) | |
| M 107:2 mtz_file.__init__ - B (6) | |
| xia2/Wrappers/CCP4/AimlessHelpers.py | |
| F 3:0 parse_aimless_xml - B (6) | |
| xia2/Wrappers/CCP4/Blend.py | |
| F 198:0 parse_clusters_file - B (10) | |
| F 162:0 parse_summary_file - B (9) | |
| F 273:0 clusters_as_scipy_linkage_matrix - B (8) | |
| xia2/Wrappers/CCP4/Chooch.py | |
| F 34:0 preprocess_scan - B (7) | |
| xia2/Wrappers/CCP4/MosflmHelpers.py | |
| F 79:0 _parse_mosflm_integration_output - D (22) | |
| F 258:0 _parse_mosflm_index_output - C (19) | |
| F 26:0 detector_class_to_mosflm - B (8) | |
| F 509:0 _parse_summary_file - B (8) | |
| F 376:0 _parse_mosflm_index_output_all - B (7) | |
| xia2/Wrappers/EMBL/Best.py | |
| F 225:0 xml_to_dict - B (9) | |
| xia2/Wrappers/Mosflm/AutoindexHelpers.py | |
| F 12:0 parse_index_log - B (8) | |
| F 39:0 set_distance - B (6) | |
| xia2/Wrappers/XDS/XDS.py | |
| F 171:0 imageset_to_xds - D (22) | |
| F 530:0 find_hdf5_lib - B (8) | |
| F 375:0 beam_centre_mosflm_to_xds - B (6) | |
| xia2/Wrappers/XDS/XDSCorrectHelpers.py | |
| F 62:0 _parse_correct_lp - C (18) | |
| xia2/Wrappers/XDS/XDSIdxrefHelpers.py | |
| F 38:0 _parse_idxref_index_origin - B (7) | |
| F 63:0 _parse_idxref_lp - B (7) | |
| F 18:0 _parse_idxref_lp_distance_etc - B (6) | |
| F 141:0 _parse_idxref_lp_quality - B (6) | |
| xia2/Wrappers/XDS/XDSIntegrateHelpers.py | |
| F 39:0 _parse_integrate_lp - D (22) | |
| xia2/Wrappers/XDS/XScaleHelpers.py | |
| F 43:0 get_correlation_coefficients_and_group - C (15) | |
| xia2/Wrappers/XIA/Diffdump.py | |
| F 308:0 failover_cbf - D (21) | |
| F 432:0 failover_dxtbx - B (8) | |
| F 145:0 find_detector_id - B (7) | |
| F 200:0 failover_full_cbf - B (7) | |
| xia2/command_line/add_free_set.py | |
| F 12:0 add_free_set - C (14) | |
| xia2/command_line/compare_merging_stats.py | |
| F 75:0 plot_merging_stats - C (15) | |
| xia2/command_line/ispyb_xml.py | |
| F 8:0 ispyb_xml - B (8) | |
| xia2/command_line/merging_statistics.py | |
| F 28:0 table1_tex - C (12) | |
| F 123:0 run - B (7) | |
| xia2/command_line/html.old.py | |
| F 334:0 output_files_section - C (14) | |
| F 449:0 integration_status_section - C (13) | |
| F 571:0 detailed_statistics_section - C (12) | |
| F 150:0 overview_section - B (10) | |
| F 261:0 crystallographic_parameters_section - B (7) | |
| F 741:0 table_to_c3js_charts - B (7) | |
| F 40:0 make_logfile_html - B (6) | |
| F 649:0 table_to_google_charts - B (6) | |
| xia2/command_line/html.py | |
| F 26:0 generate_xia2_html - F (57) | |
| F 444:0 table_to_c3js_charts - B (7) | |
| F 358:0 make_logfile_html - B (6) | |
| xia2/command_line/index.py | |
| F 11:0 run - B (7) | |
| xia2/command_line/integrate.py | |
| F 12:0 run - B (7) | |
| xia2/command_line/ispyb_json.py | |
| F 10:0 ispyb_object - B (6) | |
| xia2/command_line/report.py | |
| F 1129:0 run - D (21) | |
| M 114:2 xia2_report.__init__ - C (16) | |
| M 267:2 xia2_report.overall_statistics_table - C (14) | |
| M 415:2 xia2_report.cc_one_half_plot - B (10) | |
| M 231:2 xia2_report.merging_statistics_table - B (8) | |
| M 676:2 xia2_report.second_moments_plot - B (7) | |
| M 314:2 xia2_report.xtriage_report - B (6) | |
| xia2/command_line/multi_crystal_analysis.py | |
| F 23:0 multi_crystal_analysis - F (51) | |
| F 442:0 run - B (6) | |
| xia2/command_line/npp.py | |
| F 3:0 npp - B (6) | |
| xia2/command_line/overload.py | |
| F 80:0 build_hist - C (12) | |
| F 42:0 read_cbf_image - B (8) | |
| xia2/command_line/pea_in_box.py | |
| F 10:0 reconstruct_peabox - D (21) | |
| xia2/command_line/plot_multiplicity.py | |
| F 300:0 run - B (10) | |
| M 143:2 MultiplicityViewJson.render - B (10) | |
| M 51:2 MultiplicityViewPng.render - B (8) | |
| xia2/command_line/magic_scaling_doohicky.py | |
| F 12:0 find_pickle_and_json - C (13) | |
| xia2/command_line/rescale.py | |
| F 18:0 run - B (7) | |
| xia2/command_line/rogues_gallery.py | |
| F 25:0 reconstruct_rogues - C (17) | |
| xia2/command_line/strategy.py | |
| F 15:0 run - C (20) | |
| xia2/command_line/to_amber.py | |
| F 6:0 to_amber - B (7) | |
| xia2/command_line/multi_crystal_scale.py | |
| F 40:0 run - C (14) | |
| xia2/command_line/xia2_main.py | |
| F 32:0 xia2_main - F (44) | |
| F 286:0 run - B (10) | |
| xia2/command_line/mca.py | |
| F 23:0 multi_crystal_analysis - E (33) | |
| F 338:0 run - B (6) | |
| xia2/command_line/table1.py | |
| F 3:0 table1_tex - C (18) | |
| xia2/lib/NMolLib.py | |
| F 86:0 compute_nmol_from_volume - B (10) | |
| xia2/lib/SymmetryLib.py | |
| F 170:0 compute_enantiomorph - C (18) | |
| F 62:0 spacegroup_name_xHM_to_old - B (8) | |
| F 96:0 spacegroup_name_old_to_xHM - B (7) |
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