Dials python dependencies

.block

license: mit

README.md

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graph.json

{"directed": true, "graph": {}, "nodes": [{"id": "xia2_regression"}, {"id": "dials"}, {"id": "eigen"}, {"id": "probe"}, {"id": "reduce"}, {"id": "ccp4io"}, {"id": "chiltbx"}, {"id": "fable"}, {"id": "docutils"}, {"id": "ccp4io_adaptbx"}, {"id": "cppxfel"}, {"id": "clipper"}, {"id": "cmake"}, {"id": "scons"}, {"id": "spotfinder"}, {"id": "dials_regression"}, {"id": "cma_es"}, {"id": "tntbx"}, {"id": "gtest"}, {"id": "tst_stills_process"}, {"id": "omptbx"}, {"id": "tbxx"}, {"id": "boost"}, {"id": "iota"}, {"id": "simtbx"}, {"id": "annlib"}, {"id": "gltbx"}, {"id": "xfel"}, {"id": "king"}, {"id": "mmtbx"}, {"id": "annlib_adaptbx"}, {"id": "suitename"}, {"id": "msvc9.0_include"}, {"id": "xia2"}, {"id": "iotbx"}, {"id": "crys3d"}, {"id": "boost_adaptbx"}, {"id": "rstbx"}, {"id": "wxtbx"}, {"id": "cbflib_adaptbx"}, {"id": "prime"}, {"id": "smtbx"}, {"id": "cbflib"}, {"id": "sphinx"}, {"id": "dials.github.io"}, {"id": "cxi_user"}, {"id": "cctbx"}, {"id": "libtbx"}, {"id": "__pycache__"}, {"id": "fftw3tbx"}, {"id": "dox"}, {"id": "dxtbx"}, {"id": "ucif"}, {"id": "labelit"}, {"id": "dox.sphinx"}, {"id": "cudatbx"}, {"id": "cootbx"}, {"id": "scitbx"}, {"id": "gui_resources"}, {"id": "clipper_adaptbx"}], "links": [{"source": 0, "target": 47}, {"source": 0, "target": 57}, {"source": 0, "target": 36}, {"source": 1, "target": 26}, {"source": 1, "target": 34}, {"source": 1, "target": 37}, {"source": 1, "target": 27}, {"source": 1, "target": 47}, {"source": 1, "target": 46}, {"source": 1, "target": 51}, {"source": 1, "target": 35}, {"source": 1, "target": 36}, {"source": 1, "target": 57}, {"source": 2, "target": 47}, {"source": 5, "target": 47}, {"source": 6, "target": 47}, {"source": 7, "target": 8}, {"source": 7, "target": 21}, {"source": 7, "target": 47}, {"source": 7, "target": 36}, {"source": 9, "target": 47}, {"source": 9, "target": 36}, {"source": 10, "target": 1}, {"source": 10, "target": 47}, {"source": 11, "target": 47}, {"source": 12, "target": 47}, {"source": 13, "target": 47}, {"source": 14, "target": 34}, {"source": 14, "target": 30}, {"source": 14, "target": 47}, {"source": 15, "target": 47}, {"source": 16, "target": 57}, {"source": 16, "target": 47}, {"source": 17, "target": 57}, {"source": 17, "target": 47}, {"source": 18, "target": 47}, {"source": 19, "target": 47}, {"source": 20, "target": 47}, {"source": 20, "target": 36}, {"source": 21, "target": 47}, {"source": 22, "target": 47}, {"source": 23, "target": 27}, {"source": 23, "target": 47}, {"source": 24, "target": 37}, {"source": 24, "target": 47}, {"source": 24, "target": 46}, {"source": 24, "target": 51}, {"source": 24, "target": 36}, {"source": 24, "target": 57}, {"source": 25, "target": 47}, {"source": 26, "target": 57}, {"source": 26, "target": 47}, {"source": 27, "target": 1}, {"source": 27, "target": 47}, {"source": 27, "target": 16}, {"source": 27, "target": 51}, {"source": 27, "target": 53}, {"source": 27, "target": 24}, {"source": 29, "target": 28}, {"source": 29, "target": 47}, {"source": 29, "target": 31}, {"source": 29, "target": 3}, {"source": 29, "target": 4}, {"source": 29, "target": 5}, {"source": 29, "target": 34}, {"source": 30, "target": 57}, {"source": 30, "target": 47}, {"source": 32, "target": 47}, {"source": 33, "target": 34}, {"source": 33, "target": 1}, {"source": 33, "target": 47}, {"source": 33, "target": 46}, {"source": 33, "target": 51}, {"source": 33, "target": 29}, {"source": 34, "target": 42}, {"source": 34, "target": 47}, {"source": 34, "target": 46}, {"source": 34, "target": 5}, {"source": 34, "target": 41}, {"source": 34, "target": 52}, {"source": 34, "target": 7}, {"source": 35, "target": 47}, {"source": 36, "target": 21}, {"source": 36, "target": 47}, {"source": 37, "target": 14}, {"source": 37, "target": 34}, {"source": 37, "target": 30}, {"source": 37, "target": 47}, {"source": 38, "target": 47}, {"source": 39, "target": 57}, {"source": 39, "target": 47}, {"source": 40, "target": 27}, {"source": 40, "target": 47}, {"source": 41, "target": 46}, {"source": 41, "target": 47}, {"source": 42, "target": 47}, {"source": 43, "target": 47}, {"source": 44, "target": 47}, {"source": 45, "target": 47}, {"source": 46, "target": 6}, {"source": 46, "target": 57}, {"source": 46, "target": 47}, {"source": 48, "target": 47}, {"source": 49, "target": 57}, {"source": 49, "target": 47}, {"source": 50, "target": 47}, {"source": 51, "target": 34}, {"source": 51, "target": 39}, {"source": 51, "target": 47}, {"source": 52, "target": 47}, {"source": 54, "target": 47}, {"source": 55, "target": 34}, {"source": 55, "target": 57}, {"source": 55, "target": 47}, {"source": 56, "target": 47}, {"source": 57, "target": 36}, {"source": 57, "target": 20}, {"source": 57, "target": 47}, {"source": 57, "target": 7}, {"source": 58, "target": 47}, {"source": 59, "target": 46}, {"source": 59, "target": 47}], "multigraph": false}

index.html

<!DOCTYPE html>
<meta charset="utf-8">
<style>

.links line {
  stroke: #999;
  stroke-opacity: 0.6;
}

.nodes circle {
  stroke: #fff;
  stroke-width: 1.5px;
}

/*.nodes text {
  pointer-events: none;
  font: 10px sans-serif;
}
*/
</style>
<svg width="960" height="600"></svg>
<script src="https://d3js.org/d3.v4.min.js"></script>
<script>

var svg = d3.select("svg"),
    width = +svg.attr("width"),
    height = +svg.attr("height");

svg.append("defs").append("marker")
    .attr("id", "arrow")
    .attr("viewBox", "0 -5 10 10")
    .attr("refX", 20)
    .attr("refY", 0)
    .attr("markerWidth", 8)
    .attr("markerHeight", 8)
    .attr("orient", "auto")
  .append("svg:path")
    .attr("d", "M0,-5L10,0L0,5");

var color = d3.scaleOrdinal(d3.schemeCategory20);

var simulation = d3.forceSimulation()
    .force("link", d3.forceLink())
    .force("charge", d3.forceManyBody().strength(-300))
    .force("center", d3.forceCenter(width / 2, height / 2));

// var force = d3.layout.force()
//     .nodes(dataset.nodes)
//     .links(dataset.edges)
//     .size([w, h])
//     .linkDistance([50])
//     .charge([-100])
//     .start();

d3.json("graph.json", function(error, graph) {
  if (error) throw error;

  var link = svg.append("g")
      .attr("class", "links")
    .selectAll("line")
    .data(graph.links)
    .enter().append("line")
      .attr("stroke-width", function(d) { return Math.sqrt(d.value); })
      .attr("marker-end", "url(#arrow)");

  // var node = svg.append("g")
  //     .attr("class", "nodes")
  //   .selectAll("circle")
  //   .data(graph.nodes)
  //   .enter().append("g");


  // node.append("circle")
  //     .attr("r", 5)
  //     .attr("fill", function(d) { return color(d.group); })
  //     .call(d3.drag()
  //         .on("start", dragstarted)
  //         .on("drag", dragged)
  //         .on("end", dragended));

  // node.append("title")
  //     .text(function(d) {
  //       return d.id;
  //     });

  // node.append("text")
  //     .attr("dx", 12)
  //     .attr("dy", ".35em")
  //     .text(function(d) { return d.id });

var node = svg.selectAll("g")
    .data(graph.nodes)
    .enter()
    .append("g").call(d3.drag()
          .on("start", dragstarted)
          .on("drag", dragged)
          .on("end", dragended));

node.append("circle")
    .attr("r", 5)
    .style("fill", function (d, i) { return color(i); })

node.append("text")
    .attr("x", 12)
    .attr("dy", ".35em")
    .text(function (d) { return d.id; });




  simulation
      .nodes(graph.nodes)
      .on("tick", ticked);

  simulation.force("link")
      .links(graph.links);

  function ticked() {
    link
        .attr("x1", function(d) { return d.source.x; })
        .attr("y1", function(d) { return d.source.y; })
        .attr("x2", function(d) { return d.target.x; })
        .attr("y2", function(d) { return d.target.y; });

    // this.childNodes[1].setAttribute("transform", "translate(" + d.x + "," + d.y + ")");

    // node
    //     .attr("cx", function(d) { return d.x; })
    //     .attr("cy", function(d) { return d.y; });
    // var updateNode = function() {
    node.attr("transform", function(d) {
      return "translate(" + d.x + "," + d.y + ")";
    });

      // }
  }
});

function dragstarted(d) {
  if (!d3.event.active) simulation.alphaTarget(0.3).restart();
  d.fx = d.x;
  d.fy = d.y;
}

function dragged(d) {
  d.fx = d3.event.x;
  d.fy = d3.event.y;
}

function dragended(d) {
  if (!d3.event.active) simulation.alphaTarget(0);
  d.fx = null;
  d.fy = null;
}

</script>