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December 11, 2018 22:12
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Cyclomatic complexity of dials modules, > 10
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| $ radon cc -sn C dials | |
| dials/libtbx_refresh.py | |
| F 34:0 _install_dials_autocompletion - C (17) | |
| dials/algorithms/indexing/compare_orientation_matrices.py | |
| F 8:0 difference_rotation_matrix_axis_angle - C (11) | |
| dials/algorithms/indexing/fft3d.py | |
| M 313:2 indexer_fft3d.find_basis_vector_combinations_cluster_analysis - E (38) | |
| M 210:2 indexer_fft3d.find_candidate_basis_vectors - D (25) | |
| dials/algorithms/indexing/indexer.py | |
| M 746:2 indexer_base.index - F (53) | |
| M 1165:2 indexer_base.find_candidate_orientation_matrices - D (30) | |
| M 1312:2 indexer_base.choose_best_orientation_matrix - D (30) | |
| M 519:2 indexer_base.from_parameters - D (26) | |
| M 606:2 indexer_base._setup_symmetry - D (23) | |
| M 468:2 indexer_base.__init__ - C (16) | |
| dials/algorithms/indexing/nearest_neighbor.py | |
| M 6:2 neighbor_analysis.__init__ - C (16) | |
| dials/algorithms/indexing/real_space_grid_search.py | |
| M 45:2 indexer_real_space_grid_search.real_space_grid_search - D (21) | |
| dials/algorithms/indexing/stills_indexer.py | |
| M 113:2 stills_indexer.index - F (62) | |
| M 461:2 stills_indexer.choose_best_orientation_matrix - D (25) | |
| C 85:0 stills_indexer - C (14) | |
| dials/algorithms/indexing/symmetry.py | |
| F 177:0 refine_subgroup - D (22) | |
| F 261:0 find_matching_symmetry - C (12) | |
| dials/algorithms/integration/image_integrator.py | |
| M 214:2 Task.__call__ - C (18) | |
| dials/algorithms/integration/integrator.py | |
| M 965:2 Integrator.integrate - D (26) | |
| C 1545:0 IntegratorFactory - C (17) | |
| M 1551:2 IntegratorFactory.create - C (17) | |
| C 511:0 FinalizerStills - C (11) | |
| M 517:2 FinalizerStills.__call__ - C (11) | |
| dials/algorithms/integration/integrator_stills.py | |
| M 59:2 IntegratorStills.__init__ - C (14) | |
| dials/algorithms/integration/kapton_correction.py | |
| M 284:2 KaptonAbsorption.abs_bounding_lines - C (11) | |
| dials/algorithms/integration/processor.py | |
| M 374:2 Task.__call__ - E (32) | |
| C 337:0 Task - C (19) | |
| dials/algorithms/integration/report.py | |
| F 31:0 generate_integration_report - C (14) | |
| dials/algorithms/integration/stills_significance_filter.py | |
| M 42:2 SignificanceFilter.__call__ - C (15) | |
| dials/algorithms/integration/parallel_integrator.py | |
| M 324:2 IntegrationJob.__call__ - C (12) | |
| M 809:2 ReferenceCalculatorJob.__call__ - C (12) | |
| C 49:0 BackgroundCalculatorFactory - C (11) | |
| M 55:2 BackgroundCalculatorFactory.create - C (11) | |
| dials/algorithms/profile_model/gaussian_rs/calculator.py | |
| M 559:2 ScanVaryingProfileModelCalculator.__init__ - C (14) | |
| dials/algorithms/profile_model/gaussian_rs/model.py | |
| M 99:2 Model.__init__ - C (11) | |
| dials/algorithms/refinement/engine.py | |
| M 901:2 LevenbergMarquardtIterations._run_core - C (12) | |
| dials/algorithms/refinement/constraints.py | |
| M 197:2 ConstraintManagerFactory.build_constraint - C (15) | |
| dials/algorithms/refinement/refiner.py | |
| M 678:2 Refiner.print_exp_rmsd_table - D (28) | |
| M 749:2 Refiner.print_panel_rmsd_table - D (28) | |
| M 808:2 Refiner.run - D (21) | |
| M 189:2 RefinerFactory._build_components - C (16) | |
| M 351:2 RefinerFactory.config_restraints - C (11) | |
| dials/algorithms/refinement/refinement_helpers.py | |
| F 287:0 string_sel - C (11) | |
| dials/algorithms/refinement/reflection_manager.py | |
| C 220:0 ReflectionManagerFactory - C (17) | |
| M 222:2 ReflectionManagerFactory.from_parameters_reflections_experiments - C (17) | |
| M 661:2 ReflectionManager.print_stats_on_matches - C (12) | |
| M 428:2 ReflectionManager.finalise - C (11) | |
| C 775:0 StillsReflectionManager - C (11) | |
| M 782:2 StillsReflectionManager.print_stats_on_matches - C (11) | |
| dials/algorithms/refinement/stills_detector_metrology.py | |
| M 34:2 StillsDetectorRefinerFactory.config_parameterisation - C (19) | |
| C 32:0 StillsDetectorRefinerFactory - C (13) | |
| dials/algorithms/refinement/rotation_decomposition.py | |
| F 17:0 solve_r3_rotation_for_angles_given_axes - D (23) | |
| dials/algorithms/refinement/analysis/centroid_analysis.py | |
| M 117:2 CentroidAnalyser.__call__ - C (16) | |
| M 24:2 CentroidAnalyser.__init__ - C (12) | |
| C 22:0 CentroidAnalyser - C (11) | |
| dials/algorithms/refinement/outlier_detection/outlier_base.py | |
| M 74:2 CentroidOutlier.__call__ - D (29) | |
| dials/algorithms/refinement/parameterisation/detector_parameters.py | |
| M 870:2 DetectorParameterisationHierarchical.__init__ - C (11) | |
| dials/algorithms/refinement/parameterisation/parameter_report.py | |
| M 77:2 ParameterReporter.__str__ - D (26) | |
| M 172:2 ParameterReporter.get_param_names - D (21) | |
| dials/algorithms/refinement/parameterisation/prediction_parameters.py | |
| M 147:2 PredictionParameterisation.get_param_vals - D (21) | |
| M 184:2 PredictionParameterisation.get_param_names - D (21) | |
| M 59:2 PredictionParameterisation.__init__ - C (18) | |
| M 496:2 PredictionParameterisation._grads_beam_loop - C (11) | |
| M 548:2 PredictionParameterisation._grads_xl_orientation_loop - C (11) | |
| M 600:2 PredictionParameterisation._grads_xl_unit_cell_loop - C (11) | |
| M 652:2 PredictionParameterisation._grads_goniometer_loop - C (11) | |
| dials/algorithms/refinement/parameterisation/scan_varying_model_parameters.py | |
| M 262:2 ScanVaryingModelParameterisation.get_ds_dp - C (11) | |
| dials/algorithms/refinement/parameterisation/scan_varying_prediction_parameters.py | |
| M 274:2 ScanVaryingPredictionParameterisation.compose - F (42) | |
| M 121:2 ScanVaryingPredictionParameterisation.__init__ - C (16) | |
| dials/algorithms/refinement/parameterisation/autoreduce.py | |
| M 376:2 AutoReduce.check_and_remove - D (22) | |
| M 297:2 AutoReduce.check_and_fix - C (18) | |
| M 160:2 AutoReduce._weak_parameterisation_search - C (14) | |
| M 246:2 AutoReduce.check_and_fail - C (14) | |
| dials/algorithms/refinement/parameterisation/configure.py | |
| M 273:2 ParameterisationFactory.from_parameters_and_experiments - F (96) | |
| C 271:0 ParameterisationFactory - D (29) | |
| dials/algorithms/refinement/restraints/restraints.py | |
| M 206:2 MeanUnitCellTie.__init__ - D (26) | |
| M 59:2 SingleUnitCellTie.__init__ - D (21) | |
| M 302:2 MeanUnitCellTie.residuals - C (12) | |
| M 394:2 MedianUnitCellTie.residuals - C (12) | |
| dials/algorithms/refinement/restraints/restraints_parameterisation.py | |
| M 90:2 RestraintsParameterisation.__init__ - C (16) | |
| M 223:2 RestraintsParameterisation.add_restraints_to_group_xl_unit_cell - C (11) | |
| dials/algorithms/scaling/active_parameter_managers.py | |
| M 239:2 ConsecutiveAPMFactory.create_consecutive_list - C (17) | |
| M 93:2 multi_active_parameter_manager.__init__ - C (12) | |
| dials/algorithms/scaling/scaler.py | |
| M 356:2 SingleScalerBase.expand_scales_to_all_reflections - C (13) | |
| dials/algorithms/scaling/post_scaling_analysis.py | |
| F 8:0 exclude_on_batch_rmerge - C (14) | |
| dials/algorithms/scaling/scaling_library.py | |
| F 182:0 create_auto_scaling_model - C (13) | |
| dials/algorithms/scaling/scaling_utilities.py | |
| F 214:0 combine_intensities - D (28) | |
| dials/algorithms/scaling/test_scale.py | |
| F 257:0 test_scale_physical - C (15) | |
| F 330:0 test_multi_scale - C (13) | |
| F 159:0 test_scale_script_prepare_input - C (12) | |
| F 413:0 test_targeted_scaling - C (11) | |
| dials/algorithms/scaling/test_Ih_table.py | |
| F 133:0 test_IhTableBlock - F (59) | |
| F 278:0 test_IhTable - E (33) | |
| F 378:0 test_IhTable_freework - D (26) | |
| F 421:0 test_IhTable_split_into_blocks - C (13) | |
| dials/algorithms/scaling/test_basis_function.py | |
| F 21:0 test_basis_function - D (22) | |
| dials/algorithms/scaling/test_error_model.py | |
| F 41:0 test_errormodel - D (29) | |
| dials/algorithms/scaling/test_gaussian_smoother.py | |
| F 7:0 test_2DGaussianSmoother - C (19) | |
| F 49:0 test_3DGaussianSmoother - C (19) | |
| dials/algorithms/scaling/test_model.py | |
| F 125:0 test_PhysicalScalingModel - F (44) | |
| F 252:0 test_ArrayScalingModel - E (32) | |
| F 67:0 test_KBScalingModel - D (24) | |
| F 351:0 test_map_old_to_new_range - C (19) | |
| dials/algorithms/scaling/test_model_factory.py | |
| F 95:0 test_model_factory_utilities - C (15) | |
| dials/algorithms/scaling/test_param_manager.py | |
| F 176:0 test_consecutive_apm_factory - E (36) | |
| F 126:0 test_concurrent_apm_factory - C (20) | |
| F 46:0 test_general_apm - C (18) | |
| F 86:0 test_multi_apm - C (17) | |
| F 273:0 test_create_apm_factory - C (11) | |
| dials/algorithms/scaling/test_scaler_factory.py | |
| F 166:0 test_TargetScalerFactory - D (22) | |
| dials/algorithms/scaling/test_scale_components.py | |
| F 322:0 test_SmoothScaleFactor3D - D (25) | |
| F 248:0 test_SmoothScaleFactor2D - D (24) | |
| F 161:0 test_SmoothScaleFactor1D - C (20) | |
| F 205:0 test_SmoothBScaleFactor1D - C (20) | |
| F 101:0 test_SHScalefactor - C (19) | |
| F 16:0 test_ScaleComponentBase - C (17) | |
| F 81:0 test_SingleBScaleFactor - C (11) | |
| dials/algorithms/scaling/test_scaler.py | |
| F 352:0 test_SingleScaler - F (45) | |
| F 647:0 test_MultiScaler - D (24) | |
| F 284:0 test_ScalerBase - C (16) | |
| F 758:0 test_multiscaler_outlier_rejection_routine - C (14) | |
| F 480:0 test_SingleScaler_error_optimisation - C (13) | |
| dials/algorithms/scaling/test_scaling_library.py | |
| F 274:0 test_auto_scaling_model - C (14) | |
| dials/algorithms/scaling/test_scaling_restaints.py | |
| F 126:0 test_MultiScalingRestraints - C (11) | |
| dials/algorithms/scaling/test_scaling_utilities.py | |
| F 138:0 test_sph_harm_table - C (15) | |
| dials/algorithms/scaling/test_target_function.py | |
| F 272:0 test_target_rmsd_calculation - C (18) | |
| F 226:0 test_target_function - C (17) | |
| F 303:0 test_target_fixedIh - C (11) | |
| dials/algorithms/scaling/test_weighting.py | |
| F 22:0 test_weighting_schemes - C (20) | |
| dials/algorithms/scaling/cross_validation/cross_validate.py | |
| F 88:0 cross_validate - D (24) | |
| dials/algorithms/scaling/cross_validation/test_crossvalidation.py | |
| F 119:0 test_cross_validate_script - D (21) | |
| F 21:0 test_crossvalidator - C (16) | |
| F 70:0 test_dialsscalecrossvalidator - C (15) | |
| dials/algorithms/simulation/generate_test_reflections.py | |
| F 134:0 simple_gaussian_spots - D (21) | |
| F 344:0 main - C (15) | |
| dials/algorithms/simulation/reciprocal_space.py | |
| M 59:2 Simulator.with_individual_given_intensity - C (11) | |
| dials/algorithms/spot_finding/factory.py | |
| M 241:2 BackgroundGradientFilter.run - C (16) | |
| M 364:2 SpotDensityFilter.run - C (11) | |
| dials/algorithms/spot_finding/finder.py | |
| M 71:2 ExtractPixelsFromImage.__call__ - D (23) | |
| M 498:2 ExtractSpots._find_spots - C (19) | |
| M 603:2 ExtractSpots._find_spots_2d_no_shoeboxes - C (15) | |
| M 803:2 SpotFinder._find_spots_in_imageset - C (15) | |
| C 37:0 ExtractPixelsFromImage - C (13) | |
| dials/algorithms/spot_finding/per_image_analysis.py | |
| F 752:0 table - D (28) | |
| F 150:0 estimate_resolution_limit - C (20) | |
| F 330:0 estimate_resolution_limit_distl_method1 - C (12) | |
| F 436:0 estimate_resolution_limit_distl_method2 - C (11) | |
| dials/algorithms/spot_prediction/reeke.py | |
| M 391:2 reeke_model._r_limits - C (17) | |
| dials/algorithms/spot_prediction/reflection_predictor.py | |
| M 55:2 ReflectionPredictor.__init__ - C (19) | |
| dials/algorithms/statistics/fast_mcd.py | |
| M 329:2 FastMCD.large_dataset_estimate - E (31) | |
| dials/algorithms/statistics/delta_cchalf.py | |
| M 150:2 PerImageCChalfStatistics.__init__ - C (20) | |
| dials/algorithms/symmetry/__init__.py | |
| M 20:2 symmetry_base.__init__ - C (19) | |
| dials/algorithms/symmetry/test_score_symmetry_element_subgroup.py | |
| F 12:0 test_score_symmetry_element_subgroup - C (15) | |
| dials/algorithms/symmetry/cosym/__init__.py | |
| F 646:0 plot - D (22) | |
| M 344:2 analyse_datasets.cluster_analysis - C (19) | |
| M 457:2 analyse_datasets.seed_clustering - C (19) | |
| F 726:0 plot_angles - C (16) | |
| dials/algorithms/symmetry/cosym/generate_test_data.py | |
| F 6:0 generate_test_data - C (13) | |
| dials/array_family/flex.py | |
| M 590:2 reflection_table_aux.match_with_reference - C (16) | |
| M 472:2 reflection_table_aux.match_with_reference_without_copying_columns - C (15) | |
| M 1100:2 reflection_table_aux.compute_shoebox_overlap_fraction - C (15) | |
| M 1348:2 reflection_table_selector.__call__ - C (13) | |
| M 316:2 reflection_table_aux.plot - C (12) | |
| M 1142:2 reflection_table_aux.assert_experiment_identifiers_are_consistent - C (12) | |
| dials/command_line/align_crystal.py | |
| F 330:0 run - C (14) | |
| M 112:2 align_crystal.__init__ - C (14) | |
| dials/command_line/analyse_output.py | |
| M 107:2 per_panel_plot.__init__ - D (24) | |
| dials/command_line/background.py | |
| F 37:0 run - C (13) | |
| dials/command_line/check_indexing_symmetry.py | |
| F 190:0 get_indexing_offset_correlation_coefficients - C (18) | |
| F 122:0 test_crystal_pointgroup_symmetry - C (11) | |
| dials/command_line/combine_experiments.py | |
| M 337:2 Script.run_with_preparsed - F (54) | |
| M 208:2 CombineWithReference.__call__ - C (17) | |
| C 310:0 Script - C (14) | |
| dials/command_line/combine_found_spots.py | |
| F 121:0 combine - C (13) | |
| dials/command_line/compare_mosflm_dials.py | |
| F 146:0 compare_chunks - C (14) | |
| dials/command_line/compare_mosflm_xds.py | |
| F 179:0 compare_chunks - C (14) | |
| dials/command_line/compare_xds_dials.py | |
| F 182:0 compare_chunks - C (14) | |
| dials/command_line/compare_xds_dials2.py | |
| M 466:2 CompareIntensity.plot_scale_vs_i_over_sigma - C (13) | |
| dials/command_line/complete_full_sphere.py | |
| M 49:2 Script.run - C (13) | |
| dials/command_line/create_profile_model.py | |
| M 65:2 Script.run - C (14) | |
| M 148:2 Script.process_reference - C (12) | |
| dials/command_line/detect_blanks.py | |
| F 177:0 run - D (24) | |
| dials/command_line/dials_import.py | |
| M 555:2 MetaDataUpdater.import_lookup_data - E (37) | |
| M 672:2 Script.run - C (15) | |
| C 438:0 MetaDataUpdater - C (12) | |
| dials/command_line/display_reference_profiles.py | |
| F 18:0 display_reference_profiles - D (21) | |
| dials/command_line/duelling_profiles.py | |
| F 313:0 model_reflection_rt0 - E (31) | |
| F 475:0 main - C (15) | |
| F 91:0 trace_path - C (14) | |
| dials/command_line/estimate_gain.py | |
| F 37:0 estimate_gain - C (13) | |
| dials/command_line/estimate_resolution_limit.py | |
| F 26:0 run - C (13) | |
| dials/command_line/export_bitmaps.py | |
| F 224:0 image_filter - E (31) | |
| F 115:0 imageset_as_bitmaps - D (23) | |
| dials/command_line/extract_background_signal.py | |
| M 45:2 Script.run - D (23) | |
| C 24:0 Script - C (12) | |
| dials/command_line/extract_shoeboxes.py | |
| M 69:2 Script.run - D (25) | |
| C 48:0 Script - C (13) | |
| dials/command_line/filter_reflections.py | |
| M 201:2 Script.run - F (42) | |
| C 43:0 Script - C (14) | |
| dials/command_line/generate_mask.py | |
| M 66:2 Script.run - C (11) | |
| dials/command_line/find_shared_models.py | |
| M 70:2 Script.run - C (17) | |
| dials/command_line/find_spots_client.py | |
| F 56:0 work_all - C (12) | |
| dials/command_line/find_spots_server.py | |
| F 65:0 work - C (18) | |
| dials/command_line/geometry_viewer.py | |
| F 562:0 run - C (19) | |
| M 76:2 render_3d.set_goniometer_points - C (15) | |
| dials/command_line/make_sphinx_html.py | |
| F 33:0 update_dials_download_links - C (12) | |
| dials/command_line/integrate.py | |
| M 154:2 Script.run - F (49) | |
| M 536:2 Script.split_for_scan_range - D (25) | |
| C 135:0 Script - C (11) | |
| dials/command_line/goniometer_calibration.py | |
| F 37:0 run - C (15) | |
| dials/command_line/cosym.py | |
| F 64:0 run - F (68) | |
| dials/command_line/import_stream.py | |
| M 94:2 Script.run - C (15) | |
| dials/command_line/import_xds.py | |
| M 280:2 XDSFileImporter.extract_varying_crystal - D (25) | |
| M 184:2 XDSFileImporter.__call__ - C (16) | |
| C 177:0 XDSFileImporter - C (11) | |
| dials/command_line/index.py | |
| F 87:0 run - C (19) | |
| dials/command_line/plot_scaling_error_models.py | |
| F 38:0 main - C (15) | |
| dials/command_line/make_radial_average.py | |
| M 80:2 Script.run - D (24) | |
| C 61:0 Script - C (13) | |
| dials/command_line/merge_reflection_lists.py | |
| M 61:2 Script.run - C (12) | |
| dials/command_line/plot_centroid_analysis.py | |
| F 49:0 save_plots - C (15) | |
| dials/command_line/plot_detector_shifts.py | |
| F 262:0 guess_grid_size - C (20) | |
| M 370:2 Script.__call__ - C (12) | |
| C 299:0 Script - C (11) | |
| dials/command_line/plot_find_spots_client.py | |
| F 24:0 run - D (29) | |
| dials/command_line/plot_reflections.py | |
| F 32:0 run - E (38) | |
| dials/command_line/refine.py | |
| M 227:2 Script.run - E (34) | |
| dials/command_line/reciprocal_lattice_viewer.py | |
| M 170:2 render_3d.set_points - D (30) | |
| F 894:0 run - C (12) | |
| C 97:0 render_3d - C (11) | |
| M 463:2 settings_window.add_controls - C (11) | |
| M 679:2 settings_window.OnChangeSettings - C (11) | |
| dials/command_line/refine_bravais_settings.py | |
| F 119:0 run - C (18) | |
| dials/command_line/reindex.py | |
| F 127:0 run - E (31) | |
| dials/command_line/report.py | |
| M 140:2 per_panel_plot.__init__ - C (19) | |
| M 2599:2 ScalingModelAnalyser.__call__ - C (17) | |
| M 277:2 ScanVaryingCrystalAnalyser.plot_cell - C (14) | |
| M 2941:2 Analyser.experiments_table - C (14) | |
| M 597:2 StrongSpotsAnalyser.spot_count_per_image - C (13) | |
| M 435:2 ScanVaryingCrystalAnalyser.plot_orientation - C (12) | |
| F 2813:0 scaling_model_tables - C (11) | |
| M 2875:2 Analyser.__call__ - C (11) | |
| dials/command_line/rl_csv.py | |
| F 30:0 run - C (13) | |
| dials/command_line/rl_png.py | |
| F 113:0 run - C (16) | |
| dials/command_line/merge_cbf.py | |
| F 76:0 merge_cbf - D (25) | |
| dials/command_line/semisynthetic_variance_analysis.py | |
| F 25:0 semisynthetic_variance_analysis - D (26) | |
| dials/command_line/shadow_plot.py | |
| F 44:0 run - D (26) | |
| dials/command_line/show.py | |
| F 275:0 show_reflections - E (32) | |
| F 63:0 show_beam - C (13) | |
| dials/command_line/show_extensions.py | |
| M 36:2 Script.run - C (12) | |
| dials/command_line/simple_strategy.py | |
| F 39:0 run - C (12) | |
| dials/command_line/simulate.py | |
| M 54:2 Script.main - D (24) | |
| dials/command_line/slice_sweep.py | |
| M 227:2 Script.run - F (41) | |
| C 204:0 Script - D (21) | |
| dials/command_line/split_experiments.py | |
| M 71:2 Script.run - E (35) | |
| C 19:0 Script - C (18) | |
| dials/command_line/spot_counts_per_image.py | |
| F 42:0 run - C (14) | |
| dials/command_line/stereographic_projection.py | |
| F 153:0 run - E (38) | |
| F 302:0 plot_projections - C (18) | |
| dials/command_line/plot_scaling_models.py | |
| F 57:0 plot_scaling_models - D (21) | |
| F 154:0 plot_smooth_scales - C (12) | |
| dials/command_line/stills_process.py | |
| M 263:2 Script.run - E (36) | |
| M 768:2 Processor.integrate - D (21) | |
| M 990:2 Processor.finalize - D (21) | |
| M 543:2 Processor.process_datablock - C (17) | |
| C 216:0 Script - C (16) | |
| M 510:2 Processor.setup_filenames - C (13) | |
| M 649:2 Processor.index - C (13) | |
| M 237:2 Script.load_reference_geometry - C (11) | |
| M 887:2 Processor.write_integration_pickles - C (11) | |
| dials/command_line/two_theta_refine.py | |
| M 406:2 Script.run - D (26) | |
| dials/command_line/unify_setting.py | |
| F 29:0 run - C (11) | |
| dials/command_line/stills_detector_hybrid_refine.py | |
| M 365:2 Script.run - C (19) | |
| F 103:0 detector_parallel_refiners - C (17) | |
| dials/command_line/scale.py | |
| M 397:2 Script.scaling_algorithm - C (19) | |
| dials/command_line/symmetry.py | |
| F 75:0 run - F (43) | |
| dials/command_line/frame_orientations.py | |
| F 139:0 extract_experiment_data - C (16) | |
| M 62:2 Script.run - C (12) | |
| dials/command_line/plot_scan_varying_model.py | |
| M 79:2 Script.run - D (30) | |
| M 215:2 Script.plot_cell - C (14) | |
| dials/command_line/search_beam_position.py | |
| F 340:0 discover_better_experimental_model - C (18) | |
| F 445:0 run - C (16) | |
| M 89:2 better_experimental_model_discovery.optimize_origin_offset_local_scope - C (15) | |
| dials/command_line/index_stills.py | |
| F 297:0 _miller_repr - C (15) | |
| dials/command_line/stills_process_mpi.py | |
| M 49:2 Script.assign_work - C (16) | |
| dials/command_line/compute_delta_cchalf.py | |
| M 349:2 Script.write_experiments_and_reflections - C (14) | |
| M 127:2 Script.run - C (11) | |
| dials/doc/examples/read_experiment_and_data/example_experiment_data.py | |
| M 48:2 Script.run - C (13) | |
| dials/test/algorithms/background/test_gmodel.py | |
| F 3:0 test_run - C (16) | |
| dials/test/algorithms/background/test_mosflm_outlier_rejector.py | |
| F 6:0 test_run - D (22) | |
| dials/test/algorithms/background/test_outlier_rejector.py | |
| F 19:0 assert_basic_mask_is_correct - C (18) | |
| dials/test/algorithms/image/connected_components/test_connected_components.py | |
| M 58:2 Test2d.test_labels_are_valid - C (18) | |
| M 143:2 Test3d.test_labels_are_valid - C (15) | |
| dials/test/algorithms/indexing/test_index_synthetic.py | |
| F 27:0 any_compatible_unit_cell - C (18) | |
| dials/test/algorithms/indexing/test_phi_scan.py | |
| F 14:0 test_run - D (22) | |
| dials/test/algorithms/integration/test_integration_summation_2d.py | |
| F 13:0 run - C (12) | |
| dials/test/algorithms/integration/test_interface.py | |
| F 418:0 test_summation - F (63) | |
| F 223:0 test_reflection_manager - E (39) | |
| F 58:0 test_split_blocks_non_overlapping - C (16) | |
| F 130:0 test_split_blocks_overlapping - C (15) | |
| dials/test/algorithms/integration/test_parallel_integrator.py | |
| F 378:0 test_job_list - C (16) | |
| dials/test/algorithms/integration/profile/test_circle_sampler.py | |
| F 121:0 test_nearest_n - C (19) | |
| F 231:0 test_z_index - C (14) | |
| F 31:0 test_detector_area - C (12) | |
| F 59:0 test_indexing - C (11) | |
| dials/test/algorithms/integration/profile/test_grid_sampler.py | |
| F 133:0 test_weights - D (24) | |
| F 34:0 test_indexing - C (17) | |
| F 6:0 test_getters - C (12) | |
| F 95:0 test_nearest_n - C (11) | |
| dials/test/algorithms/polygon/test_spatial_interpolation.py | |
| M 38:2 TestRegridIrregularToRegular.test_known_offset - C (12) | |
| M 246:2 TestRegridRegularToIrregular.test_known_offset - C (12) | |
| dials/test/algorithms/polygon/clip/test_clipping.py | |
| M 315:2 TestLineWithRect.intersects - C (15) | |
| F 28:0 generate_non_intersecting - C (11) | |
| dials/test/algorithms/profile_model/test_ewald_sphere_sampler.py | |
| F 69:0 tst_nearest_n - C (16) | |
| dials/test/algorithms/refinement/test_constraints.py | |
| F 28:0 test_contraints_manager_simple_test - C (14) | |
| dials/test/algorithms/refinement/test_finite_diffs.py | |
| F 17:0 test - C (14) | |
| dials/test/algorithms/refinement/test_detector_parameters.py | |
| F 83:0 test - D (28) | |
| dials/test/algorithms/refinement/test_multi_panel_detector_parameterisation.py | |
| F 86:0 test - C (18) | |
| dials/test/algorithms/refinement/test_refinement_regression.py | |
| F 8:0 test - C (14) | |
| dials/test/algorithms/refinement/test_refine_multi_stills.py | |
| F 48:0 test_multi_process_refinement_gives_same_results_as_single_process_refinement - C (11) | |
| dials/test/algorithms/refinement/test_refine_multi_wedges.py | |
| F 67:0 test_order_invariance - D (23) | |
| dials/test/algorithms/refinement/test_restraints_gradients.py | |
| F 12:0 test - C (16) | |
| dials/test/algorithms/refinement/test_scan_varying_beam_refinement.py | |
| F 25:0 test_refinement_and_compare_with_known_truth - C (11) | |
| dials/test/algorithms/refinement/test_scan_varying_block_calculation.py | |
| F 91:0 test_per_width_and_per_image_are_equivalent - C (18) | |
| dials/test/algorithms/refinement/test_scan_varying_model_parameters.py | |
| F 28:0 test_gaussian_smoother - C (14) | |
| dials/test/algorithms/refinement/test_stills_prediction_parameters.py | |
| F 163:0 test_stills_pred_param - C (13) | |
| dials/test/algorithms/refinement/test_parameter_auto_reduction.py | |
| F 90:0 test_check_and_remove - C (13) | |
| dials/test/algorithms/reflection_basis/test_map_frames.py | |
| F 108:0 test_map_frames_reverse - C (17) | |
| F 6:0 test_map_frames_forward - C (12) | |
| dials/test/algorithms/reflection_basis/test_transform.py | |
| F 30:0 test_forward - D (23) | |
| F 438:0 test_forward_no_model - C (14) | |
| dials/test/algorithms/shoebox/test_bbox_calculator.py | |
| F 41:0 test_outer_bounds - C (17) | |
| F 117:0 test_radius - C (12) | |
| dials/test/algorithms/shoebox/test_find_overlapping.py | |
| F 70:0 brute_force - C (19) | |
| dials/test/algorithms/shoebox/test_mask_foreground.py | |
| F 6:0 test - C (16) | |
| F 140:0 generate_reflections - C (11) | |
| dials/test/array_family/test_flex_shoebox.py | |
| F 56:0 test_does_bbox_contain_bad_pixels - C (13) | |
| dials/test/array_family/test_reflection_table.py | |
| F 137:0 test_row_operations - F (47) | |
| F 1069:0 test_experiment_identifiers - E (32) | |
| F 44:0 test_resizing - D (30) | |
| F 285:0 test_slicing - D (25) | |
| F 516:0 test_del_selected - D (25) | |
| F 397:0 test_select - D (22) | |
| F 714:0 test_extract_shoeboxes - C (19) | |
| F 904:0 test_split_partials_with_shoebox - C (19) | |
| F 347:0 test_updating - C (18) | |
| F 447:0 test_set_selected - C (18) | |
| F 605:0 test_flags - C (17) | |
| F 101:0 test_delete - C (16) | |
| F 7:0 test_init - C (15) | |
| F 245:0 test_iteration - C (15) | |
| F 1028:0 test_to_from_msgpack - C (13) | |
| F 1174:0 test_select_remove_on_experiment_identifiers - C (13) | |
| F 810:0 test_split_by_experiment_id - C (12) | |
| F 686:0 test_copy - C (11) | |
| dials/test/command_line/test_combine_experiments.py | |
| F 20:0 test - F (61) | |
| dials/test/command_line/test_combine_found_spots.py | |
| F 7:0 test_combining_spots - C (17) | |
| dials/test/command_line/test_compute_delta_cchalf.py | |
| F 8:0 test_compute_delta_cchalf - C (11) | |
| dials/test/command_line/test_export.py | |
| F 120:0 test_json - C (11) | |
| dials/test/command_line/test_export_best.py | |
| F 6:0 test_export_best - C (15) | |
| dials/test/command_line/test_export_xds.py | |
| F 65:0 test_export_xds - C (15) | |
| F 6:0 test_spots_xds - C (13) | |
| dials/test/command_line/test_find_spots_server_client.py | |
| F 63:0 exercise_client - C (19) | |
| dials/test/command_line/test_generate_distortion_maps.py | |
| F 97:0 test_elliptical_distortion - C (14) | |
| dials/test/command_line/test_idials.py | |
| F 5:0 test - C (17) | |
| dials/test/command_line/test_import.py | |
| F 50:0 test_override_geometry - D (22) | |
| F 148:0 test_slow_fast_beam_centre - C (11) | |
| dials/test/command_line/test_import_xds.py | |
| F 7:0 test_import_integrate_hkl - C (12) | |
| dials/test/command_line/test_integrate.py | |
| F 12:0 test2 - D (24) | |
| F 213:0 test_integrate_with_kapton - C (18) | |
| F 182:0 test_output_rubbish - C (13) | |
| F 122:0 test_multi_sweep - C (12) | |
| dials/test/command_line/test_refine.py | |
| F 142:0 test4 - C (18) | |
| dials/test/command_line/test_refine_bravais_settings.py | |
| F 115:0 test_refine_bravais_settings_554 - D (21) | |
| F 50:0 test_refine_bravais_settings_2 - C (15) | |
| F 80:0 test_refine_bravais_settings_3 - C (14) | |
| F 10:0 test_refine_bravais_settings - C (13) | |
| dials/test/command_line/test_reindex.py | |
| F 10:0 test_reindex - C (12) | |
| dials/test/command_line/test_rs_mapper.py | |
| F 8:0 test_rs_mapper - C (11) | |
| dials/test/command_line/test_search_beam_position.py | |
| F 49:0 test_index_after_search - C (11) | |
| dials/test/command_line/test_spotfinder.py | |
| F 48:0 test_find_spots_with_hot_mask - C (11) | |
| F 71:0 test_find_spots_with_hot_mask_with_prefix - C (11) | |
| dials/test/command_line/test_stills_process.py | |
| F 66:0 test_sacla_h5 - C (11) | |
| dials/test/command_line/test_two_theta_refine.py | |
| F 13:0 test - C (11) | |
| dials/test/command_line/test_assign_experiment_identifiers.py | |
| F 22:0 test_assign_identifiers - C (12) | |
| dials/test/model/data/test_observation.py | |
| F 22:0 test_data - D (24) | |
| F 52:0 test_equality - C (13) | |
| dials/test/model/data/test_pixel_list.py | |
| F 50:0 test_labels_3d - C (16) | |
| F 96:0 test_labels_2d - C (16) | |
| dials/test/model/data/test_prediction.py | |
| F 17:0 test_data - C (13) | |
| dials/test/model/data/test_shoebox.py | |
| F 190:0 test_does_bbox_contain_bad_pixels - C (13) | |
| F 266:0 test_flatten - C (12) | |
| dials/test/util/test_export_mtz.py | |
| M 72:2 TestBatchRangeCalculations.test_calculate_batch_ranges - C (13) | |
| dials/test/util/test_nexus.py | |
| F 3:0 test_run - F (55) | |
| dials/test/util/test_nexus_multi_experiment.py | |
| F 26:0 run_single - F (67) | |
| dials/test/util/test_filter_reflections_export.py | |
| F 406:0 test_filter_reflection_table - C (17) | |
| F 140:0 test_FilteringReductionMethods - C (15) | |
| F 338:0 test_ScaleIntensityReducer - C (15) | |
| F 205:0 test_PrfIntensityReducer - C (14) | |
| F 250:0 test_SumIntensityReducer - C (13) | |
| F 297:0 test_SumAndPrfIntensityReducer - C (13) | |
| F 389:0 test_AllSumPrfScaleIntensityReducer - C (13) | |
| dials/test/util/test_multi_dataset_handling.py | |
| F 102:0 test_assign_unique_identifiers - E (34) | |
| F 217:0 test_parse_multiple_datasets - C (19) | |
| F 36:0 test_select_datasets_on_ids - C (15) | |
| dials/util/ascii_art.py | |
| F 17:0 flex_histogram - C (12) | |
| dials/util/export_mmcif.py | |
| M 29:2 MMCIFOutputFile.write - C (15) | |
| dials/util/export_mtz.py | |
| F 297:0 export_mtz - D (23) | |
| F 172:0 _write_columns - C (17) | |
| dials/util/export_sadabs.py | |
| F 10:0 export_sadabs - D (21) | |
| dials/util/export_xds_ascii.py | |
| F 11:0 export_xds_ascii - C (15) | |
| dials/util/idials.py | |
| M 639:2 Command.__init__ - C (13) | |
| dials/util/masking.py | |
| M 142:2 MaskGenerator.generate - C (20) | |
| C 135:0 MaskGenerator - C (11) | |
| M 298:2 GoniometerShadowMaskGenerator.project_extrema - C (11) | |
| dials/util/nexus_old.py | |
| M 104:2 ReflectionListDecoder.decode_column - C (17) | |
| C 67:0 ReflectionListDecoder - C (11) | |
| dials/util/options.py | |
| M 444:2 PhilCommandParser.parse_args - C (19) | |
| M 857:2 OptionParser._warn_about_unhandled_args - C (18) | |
| M 956:2 OptionParser._export_autocomplete_hints - C (15) | |
| M 571:2 PhilCommandParser._generate_input_scope - C (11) | |
| M 786:2 OptionParser.parse_args - C (11) | |
| dials/util/Resolutionizer.py | |
| M 642:2 resolutionizer.resolution_cc_half - C (20) | |
| M 400:2 resolutionizer.resolution_rmerge - C (11) | |
| dials/util/version.py | |
| F 62:0 dials_version - C (11) | |
| dials/util/filter_reflections.py | |
| F 529:0 sum_partial_reflections - C (16) | |
| M 228:2 FilterForExportAlgorithm._filter_for_export - C (12) | |
| F 54:0 filter_reflection_table - C (11) | |
| dials/util/intensity_explorer.py | |
| M 110:2 IntensityDist._multiplicity_mean_error_stddev - D (25) | |
| dials/util/regression_data.py | |
| F 57:0 fetch_test_data - E (37) | |
| dials/util/wx_viewer.py | |
| M 189:2 wxGLWindow.OnChar - C (16) | |
| M 76:2 wxGLWindow.__init__ - C (12) | |
| dials/util/multi_dataset_handling.py | |
| F 135:0 select_datasets_on_ids - C (15) | |
| F 75:0 assign_unique_identifiers - C (13) | |
| dials/util/exclude_images.py | |
| F 80:0 _remove_ranges_from_valid_image_ranges - C (11) | |
| dials/util/image_viewer/mask_frame.py | |
| M 422:2 MaskSettingsPanel.OnUpdate - F (45) | |
| M 87:2 MaskSettingsPanel.draw_settings - C (20) | |
| M 782:2 MaskSettingsPanel.AddUntrustedRectangle - C (15) | |
| dials/util/image_viewer/spotfinder_frame.py | |
| M 1089:2 SpotFrame.get_spotfinder_data - F (73) | |
| M 895:2 SpotFrame.update_settings - F (45) | |
| M 811:2 SpotFrame.get_raw_data - E (35) | |
| M 593:2 SpotFrame.draw_resolution_rings - D (28) | |
| M 367:2 SpotFrame.drawUntrustedPolygons - D (21) | |
| M 42:2 SpotFrame.__init__ - C (16) | |
| M 318:2 SpotFrame.boxSelect - C (11) | |
| M 499:2 SpotFrame.load_image - C (11) | |
| dials/util/image_viewer/slip_viewer/frame.py | |
| M 622:2 XrayFrame.OnSaveAs - F (45) | |
| M 307:2 XrayFrame.load_image - C (18) | |
| M 436:2 XrayFrame.update_settings - C (16) | |
| dials/util/image_viewer/slip_viewer/pyslip.py | |
| M 1507:4 PySlip.DrawPolygonLayer - C (15) | |
| M 1872:4 PySlip.OnLeftUp - C (15) | |
| M 2007:4 PySlip.OnRightUp - C (13) | |
| M 2117:4 PySlip.Draw - C (13) | |
| dials/util/image_viewer/slip_viewer/ring_frame.py | |
| M 128:2 RingSettingsPanel.OnAutoFit - C (16) | |
| dials/util/image_viewer/slip_viewer/slip_display.py | |
| M 1523:4 AppFrame.handle_position_event - C (16) | |
| M 1097:4 AppFrame.textViewSelect - C (12) | |
| M 662:4 AppFrame.pointSelect - C (11) | |
| M 756:4 AppFrame.pointViewSelect - C (11) | |
| M 1013:4 AppFrame.textSelect - C (11) | |
| dials/util/image_viewer/slip_viewer/tile_generation.py | |
| F 49:0 _get_flex_image_multipanel - C (15) | |
| M 355:4 _Tiles.flex_image_get_tile - C (12) | |
| dials/util/nexus/nx_mx.py | |
| F 763:0 load - E (38) | |
| F 579:0 load_crystal - D (22) | |
| F 521:0 load_goniometer - C (14) | |
| F 455:0 load_detector - C (13) | |
| F 654:0 dump - C (11) | |
| dials/util/nexus/nx_reflections.py | |
| F 42:0 write - D (28) | |
| F 186:0 read - D (28) | |
| dials/viewer/from_flex_to_wxbitmap.py | |
| M 25:2 wxbitmap_convert.__init__ - C (19) |
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