ndevenish

import cPickle as pickle
from scitbx.array_family import flex

with open("indexed.pickle") as f:
  ref = pickle.load(f)

indexed = ref.get_flags(ref.flags.indexed)
intensity_one = flex.bool([x["intensity.sum.value"] == 1 for x in ref])
size_one_shoebox = flex.bool([sum(x["shoebox"].size()) == 3 for x in ref])
# TypeError: No to_python (by-value) converter found for C++ type: dials::model::Shoebox<float>

ndevenish

pipeline {
  agent { label "centos6" }

  stages {
    // Prepare the workspace by copying artifacts, updating repositories etc
    stage('Prepare') {

    }
    stage('Bootstrap') {
      when {

ndevenish

/**
 * Basic testing infrastructure for array_family polymorphic resources.
 *
 * Provides an extremely minimal replacement for some of the GoogleTest
 * testing API, under the hope that at some point a proper C++ testing
 * framework will be included with the distribution.
 *
 * If googletest is present, determined by the define NO_GTEST being
 * #undefined, then use that instead of our minimal replacement.
 *

ndevenish

mkdir modules
git clone https://github.com/benjaminhwilliams/cctbx_project.git modules/cctbx_project
ln -s modules/cctbx_project/libtbx/auto_build/bootstrap.py
python bootstrap.py --builder=dials hot base update build
cd modules/cctbx_project/ && \
  git remote set-url origin [email protected]:cctbx/cctbx_project.git && \
  git fetch && \
  git reset --hard origin/master

ndevenish

license: mit

ndevenish

#!/usr/bin/env python

import matplotlib.pyplot as plt
import numpy as np
import cPickle as pickle
import enum
import dials.array_family.flex as flex
import sys

if "-h" in sys.argv or "--help" in sys.argv or len(sys.argv[1:]) != 1:

ndevenish

#!/usr/bin/env python

from __future__ import print_function
import os
import sys
from collections import Counter

all_files = []
for path, dirs, files in os.walk("."):
  all_files.extend(os.path.join(path, x) for x in files if x.endswith(".py"))

ndevenish

$ docker build .
Sending build context to Docker daemon   2.56kB
Step 1/12 : FROM centos:6
 ---> 609c1f9b5406
Step 2/12 : RUN yum install -y gcc git automake make gcc-c++ pkgconfig patch
 ---> Running in 450b545850ed
Loaded plugins: fastestmirror, ovl
Setting up Install Process
Package 1:make-3.81-23.el6.x86_64 already installed and latest version
Package 1:pkgconfig-0.23-9.1.el6.x86_64 already installed and latest version

ndevenish

Homebrew build logs for llvm on 4.9.93-linuxkit-aufs
Build date: 2018-10-30 19:33:15

ndevenish

from collections import OrderedDict

from bowler import *
from fissix.fixer_util import Attr, Name, ArgList, String, Comma
from fissix.pytree import type_repr, Node, Leaf  # , Node, type_repr
from bowler.types import TOKEN
from fissix.pgen2 import token  # token.COMMA
from fissix.pygram import python_symbols as syms

from libfuturize import fixer_util