Created
September 21, 2020 12:44
-
-
Save netsatsawat/6bede56769d525351ed1990c87520852 to your computer and use it in GitHub Desktop.
Python script demonstrates the implementation of Gaussian Mixture model
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
train_df = data_df.loc[: '2019-01-01'].dropna() | |
test_df = data_df.loc['2019-01-01': ].dropna() | |
X_train = train_df[FT_COLS].values | |
X_test = test_df[FT_COLS].values | |
model = mix.GaussianMixture(n_components=N_COMPONENTS, | |
covariance_type="full", | |
n_init=100, | |
random_state=SEED).fit(X_train) | |
# Predict the optimal sequence of internal hidden state | |
hidden_states = model.predict(X_train) | |
print("Means and vars of each hidden state") | |
for i in range(model.n_components): | |
print(f'{i}th hidden state') | |
print('mean: ', (model.means_[i])) | |
print('var: ', np.diag(model.covariances_[i])) | |
print() | |
sns.set(font_scale=1.25) | |
style_kwds = {'xtick.major.size': 3, 'ytick.major.size': 3, 'legend.frameon': True} | |
sns.set_style('white', style_kwds) | |
fig, axs = plt.subplots(model.n_components, sharex=True, sharey=True, figsize=(12,9)) | |
colors = cm.rainbow(np.linspace(0, 1, model.n_components)) | |
for i, (ax, color) in enumerate(zip(axs, colors)): | |
# Use fancy indexing to plot data in each state. | |
mask = hidden_states == i | |
ax.plot_date(train_df.index.values[mask], | |
train_df[COL_].values[mask], | |
".-", c=color) | |
ax.set_title("{0}th hidden state".format(i), fontsize=16, fontweight='demi') | |
# Format the ticks. | |
ax.xaxis.set_major_locator(YearLocator()) | |
ax.xaxis.set_minor_locator(MonthLocator()) | |
sns.despine(offset=10) | |
plt.tight_layout() |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
So many variables are not defined. FT_COLS, N_COMPONENTS, COL_