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August 29, 2015 14:01
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This is an example of merged JSON documents for variant annotations (actual data may not be accurate)
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{ | |
"_id": "15:g.33905410A>G", | |
"mutdb": { | |
"chromEnd": 33905410, | |
"dbsnp_id": "rs2229116", | |
"allele2": "G", | |
"uniprot_id": "VAR_011405", | |
"allele1": "A", | |
"mutpred_score": 0.384, | |
"cosmic_id": null, | |
"chromStart": 33905410, | |
"chrom": "15", | |
"strand": "p" | |
}, | |
"dbsnp": { | |
"chromEnd": 33905410, | |
"snpclass": "single", | |
"allele2": "G", | |
"allele1": "A", | |
"rsid": "rs2229116", | |
"func": "missense", | |
"chromStart": 33905409, | |
"chrom": "15", | |
"strand": "+" | |
}, | |
"cosmic": { | |
"chromEnd": 33905410, | |
"allele2": "G", | |
"allele1": "A", | |
"mut_freq": ".9", | |
"chromStart": 33905410, | |
"chrom": "15", | |
"mut_nt": "A>G", | |
"tumor_site": "large_intestine" | |
}, | |
"gwassnps": { | |
"chromEnd": 33905410, | |
"allele2": "G", | |
"trait": "A genome-wide association study of carotid atherosclerosis in HIV-infected men.", | |
"allele1": "A", | |
"pubmedID": 20009918, | |
"rsid": "rs2229116", | |
"chromStart": 33905409, | |
"chrom": "15" | |
} | |
} |
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