TMAP aln ROC Single Ends

TMAP map1 map2 map3 2.9.1 gitc2be6527ce0f6134017b61444f32cc4694aabc83

# tmap mapall -f ${REF} -r r0.fq -v stage1 map1 map2 map3 > r0.fq.map1map2map3.sam
40 77347 0
39 77817 0
38 78306 0
37 78962 0
36 79452 0
35 79794 0
34 80128 0
33 80742 0
32 81118 0
31 81435 0
30 81803 0
29 82515 0
28 82939 0
27 83297 0
26 83648 0
25 84347 0
24 84766 0
23 85110 0
22 85418 0
21 86202 0
20 86506 0
19 86806 0
18 87087 0
17 87980 0
16 88249 0
15 88583 0
14 88839 0
13 89765 0
12 90014 0
11 90400 1
10 90662 1
9 91712 1
8 92777 27
7 93178 28
6 93418 30
5 94652 44
4 94943 59
3 95493 79
2 95957 119
1 96397 242

TMAP map4 2.9.1 git:c2be6527ce0f6134017b61444f32cc4694aabc83

# tmap mapall -f ${REF} -r r0.fq -v stage1 map4 > r0.fq.map4.sam
40 84212 0
39 84470 0
38 84724 0
37 85033 0
36 85271 0
35 85438 0
34 85632 0
33 85988 0
32 86200 0
31 86356 0
30 86538 0
29 86929 0
28 87130 0
27 87326 0
26 87512 0
25 87951 0
24 88187 0
23 88367 0
22 88545 0
21 89067 0
20 89283 0
19 89472 0
18 89658 0
17 90241 0
16 90433 0
15 90620 0
14 90764 0
13 91431 2
12 91588 3
11 91798 5
10 91930 5
9 92727 11
8 93559 33
7 93831 41
6 93986 52
5 95126 105
4 95275 126
3 95741 185
2 96120 265
1 96380 366

Working on a single CPU:
"map1 map2 map3" command took 207.73 seconds (reference load time was 4.5 seconds).
"map4" command took 41.15 seconds (reference load time was 4.5 seconds).

Note that I specify the reference load time into memory here because the dataset is so small that it may be a dominant factor. Additionally, if the reference is pre-loaded into memory (with "tmap server") or the OS caches it in memory, the load time is reduced.