nilesh-tawari
/ deseq2-analysis-template.R
Created
December 11, 2018 13:51
— forked from stephenturner/deseq2-analysis-template.R
Template for analysis with DESeq2
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ## RNA-seq analysis with DESeq2 | |
| ## Stephen Turner, @genetics_blog | |
| # RNA-seq data from GSE52202 | |
| # http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse52202. All patients with | |
| # ALS, 4 with C9 expansion ("exp"), 4 controls without expansion ("ctl") | |
| # Import & pre-process ---------------------------------------------------- | |
| # Import data from featureCounts |