bam2x aggregation result render plot aggregation near tss or tts
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August 29, 2015 14:00
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bam2x aggregation result plot v0.0
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| <!DOCTYPE html> | |
| <meta charset="utf-8"> | |
| <script src="http://d3js.org/d3.v3.min.js" charset="utf-8"></script> | |
| <script src="http://nvd3.org/assets/js/nv.d3.js"></script> | |
| <style> | |
| .node { | |
| stroke: #fff; | |
| stroke-width: 1.5px; | |
| } | |
| .link { | |
| stroke: #999; | |
| stroke-opacity: .6; | |
| } | |
| </style> | |
| <link rel="stylesheet" href="mydiv.css"> | |
| <link rel="stylesheet" href="http://nvd3.org/assets/css/nv.d3.css"> | |
| <div class="myDiv" style="position:absolute; float: left; height:100%; width:210px ; border: 1px;background-color: aliceblue" id="left"> | |
| <h2>render bam2x</h2> | |
| <div id="input"> | |
| <input type="file" id="file" /> | |
| <h2>Download Demo File</h2> | |
| <a href="sample.out">example file</a> | |
| </div> | |
| </div> | |
| <div id="FIGURE" style=" margin-left: 210px ; height:100% ; background-color: white; border: 1px; text-align:center;" class="middle"> | |
| <div id="output" class="myDiv"> | |
| <h2>OUTPUT</h2> | |
| <svg id="svg"> | |
| </svg> | |
| </div> | |
| </div> | |
| </div> | |
| <script> | |
| function render(myData) | |
| { | |
| nv.addGraph( function() { | |
| var width = nv.utils.windowSize().width - 40, | |
| height = nv.utils.windowSize().height - 40; | |
| var chart = nv.models.lineChart() | |
| .margin({top: 20, right: 20, bottom: 20, left: 20}) | |
| .transitionDuration(350) | |
| .useInteractiveGuideline(true) | |
| .showLegend(true) | |
| .showYAxis(true) | |
| .showXAxis(true) | |
| chart.xAxis //Chart x-axis settings | |
| .axisLabel('Pos to TSS') | |
| .tickFormat(d3.format(',r')); | |
| chart.yAxis //Chart y-axis settings | |
| .axisLabel('Mean Coverage or Gini') | |
| .tickFormat(d3.format('.02f')); | |
| console.log(myData); | |
| console.log(chart); | |
| d3.select('#svg') | |
| .datum(myData) | |
| .call(chart); | |
| nv.utils.windowResize(function() { chart.update() }); | |
| return chart; | |
| } | |
| ); | |
| } | |
| function parseCSV(text, lineTerminator, cellTerminator) { | |
| //break the lines apart | |
| var lines = text.split(lineTerminator); | |
| var aggregation=[],gini=[] | |
| for(var j = 1; j<lines.length; j++){ | |
| if(lines[j] != ""){ | |
| var d = lines[j].split(cellTerminator); | |
| aggregation.push({x: parseInt(d[0]), y: parseFloat(d[1])}); | |
| gini.push({x: parseInt(d[0]), y: parseFloat(d[2])}); | |
| }} | |
| return [ | |
| { | |
| values: aggregation, | |
| key: "Aggregation", | |
| color: "#ff7f0e" | |
| }, | |
| { | |
| values: gini, | |
| key: "Gini", | |
| color: "#2ca02c" | |
| }, | |
| ]; | |
| } | |
| function handleFileSelect(evt) { | |
| var files = evt.target.files; | |
| var file=files[0] | |
| var reader = new FileReader(); | |
| reader.onloadend = (function(evt) { | |
| render(parseCSV(evt.target.result,"\n","\t")); | |
| }); | |
| reader.readAsText(file) | |
| } | |
| document.getElementById('file').addEventListener('change', handleFileSelect, false); | |
| </script> |
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| html,body{margin:5;padding:5;} | |
| body { | |
| font: 10px sans-serif; | |
| } | |
| /*.myDiv { width: 250px; height: 240px; padding: 0.5em; } */ | |
| input { size:200;} | |
| svg {margin: 0 auto;} | |
| .myDiv { | |
| border:0px solid black; | |
| margin-bottom: 1cm; | |
| /* | |
| -webkit-border-top-left-radius:6px; | |
| -webkit-border-top-right-radius:6px; | |
| -moz-border-radius-topleft:6px; | |
| -moz-border-radius-topright:6px; | |
| border-top-left-radius:6px; | |
| border-top-right-radius:6px; | |
| /*width:300px; */ | |
| font-size:8pt; /* or whatever */ | |
| /* background-color: aliceblue */ | |
| } | |
| .myDiv h2 { | |
| padding:4px; | |
| color:#fff; | |
| margin:0; | |
| background-color:black; | |
| font-size: 10pt; /* or whatever */ | |
| font-family:Arial; | |
| } | |
| .myDiv p { | |
| font-family:Arial; | |
| /*padding:4px; */ | |
| } | |
| .middle h2 { | |
| padding:4px; | |
| color:#fff; | |
| margin:0; | |
| background-color:navy; | |
| font-size: 10pt; /* or whatever */ | |
| font-family:Arial; | |
| } | |
| textarea { | |
| width: 60%; | |
| height: 60%; | |
| border: 3px solid #cccccc; | |
| padding: 3px; | |
| font-family: Tahoma, sans-serif; | |
| background-image: url(bg.gif); | |
| background-position: bottom right; | |
| background-repeat: no-repeat; | |
| } | |
| li:hover { | |
| background-color: #FFFFCC; | |
| } | |
| td:hover { | |
| background-color: #FFFFCC; | |
| } | |
| table {width:100px} | |
| td {white-space:nowrap;overflow:hidden;width:100px} |
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| pos_to_tts aggregation_mean gini_coefficient | |
| -500 19.8451103398 0.968160340506 | |
| -499 20.2092475241 0.968717385255 | |
| -498 20.8113874471 0.969570277967 | |
| -497 21.37655638 0.970216706113 | |
| -496 21.82495303 0.970704370853 | |
| -495 22.1755246314 0.970976615057 | |
| -494 22.2932840811 0.97099735751 | |
| -493 22.3475782569 0.970898064501 | |
| -492 22.1542209343 0.97062654212 | |
| -491 22.1706206413 0.970652919049 | |
| -490 22.2401999809 0.970706353659 | |
| -489 22.404451804 0.970773647209 | |
| -488 22.381110085 0.970537873833 | |
| -487 22.4032735726 0.970486470591 | |
| -486 21.6373594879 0.969320707454 | |
| -485 21.6568480718 0.969150454956 | |
| -484 21.7332102028 0.969136130149 | |
| -483 21.7163009904 0.968991561848 | |
| -482 21.6865586091 0.968743300419 | |
| -481 21.7080852148 0.968602723876 | |
| -480 21.6212463777 0.968365951017 | |
| -479 21.5648823361 0.968175142502 | |
| -478 21.6145272745 0.968174178556 | |
| -477 21.5243448078 0.967968574843 | |
| -476 21.4094194822 0.967734549845 | |
| -475 20.8649173646 0.966865214195 | |
| -474 20.0637837149 0.965438574261 | |
| -473 19.7992230042 0.964873493304 | |
| -472 19.9115052702 0.964789928566 | |
| -471 19.945260007 0.964914981171 | |
| -470 19.7528898513 0.964603644789 | |
| -469 21.6580899914 0.967623856485 | |
| -468 21.7637168423 0.967646060655 | |
| -467 21.9030028978 0.967736344272 | |
| -466 19.1859058052 0.963220711191 | |
| -465 19.0783364647 0.963013534422 | |
| -464 19.0180874439 0.962810698853 | |
| -463 19.0142343088 0.962689450232 | |
| -462 18.6416902844 0.961979588904 | |
| -461 18.1053720982 0.96085947142 | |
| -460 18.2908957743 0.961133599272 | |
| -459 18.5281342547 0.961555961856 | |
| -458 18.6597777282 0.961684292344 | |
| -457 18.8140305066 0.961787924914 | |
| -456 18.9802566634 0.962162397863 | |
| -455 19.0573512085 0.962169209817 | |
| -454 19.1520555361 0.962174177469 | |
| -453 19.3079323632 0.96234161105 | |
| -452 19.476992644 0.962427619301 | |
| -451 19.4493838168 0.96225692257 | |
| -450 19.3528962201 0.962055941089 | |
| -449 19.4296723243 0.962147026912 | |
| -448 19.4304365825 0.96210495474 | |
| -447 19.5019584116 0.962115539833 | |
| -446 19.6556698405 0.962253672299 | |
| -445 19.6924179219 0.96209035993 | |
| -444 19.9014743814 0.962287997494 | |
| -443 20.077062701 0.962529133798 | |
| -442 20.2787631755 0.962840117951 | |
| -441 20.4600197433 0.962993408556 | |
| -440 19.7285609655 0.961557682043 | |
| -439 19.9094990924 0.9617857687 | |
| -438 19.9533165621 0.961796672082 | |
| -437 20.1448906155 0.961995827188 | |
| -436 20.4116485686 0.962140157179 | |
| -435 20.5267012706 0.962143630408 | |
| -434 20.7111104035 0.962189750265 | |
| -433 20.8469572971 0.962208610559 | |
| -432 21.1644428876 0.962454042882 | |
| -431 21.2499761169 0.962298943446 | |
| -430 21.3377702767 0.962256030162 | |
| -429 21.2007451517 0.962009723349 | |
| -428 21.4756870363 0.962280962018 | |
| -427 21.5539598128 0.962055949996 | |
| -426 21.6512116677 0.962074022195 | |
| -425 21.6874820877 0.961836598435 | |
| -424 21.6684393211 0.961510153689 | |
| -423 21.8108779416 0.961563698428 | |
| -422 21.9240199981 0.961595280633 | |
| -421 22.0458873356 0.961503937476 | |
| -420 22.070088845 0.961477913389 | |
| -419 22.1173136325 0.961422465358 | |
| -418 22.2360920931 0.961220824133 | |
| -417 22.0168136802 0.960702734785 | |
| -416 22.3059580295 0.960784333983 | |
| -415 22.4125402032 0.960603137848 | |
| -414 22.6716555743 0.960653514053 | |
| -413 22.7719326179 0.960655133635 | |
| -412 22.7706588542 0.960561760729 | |
| -411 22.533484062 0.959968458963 | |
| -410 22.4342260294 0.959613953628 | |
| -409 22.4971499538 0.959548170034 | |
| -408 22.5555838614 0.95957869402 | |
| -407 22.7044868325 0.959572544838 | |
| -406 22.6692672675 0.959376305895 | |
| -405 22.6786294303 0.95924958206 | |
| -404 22.7504060122 0.959198534276 | |
| -403 22.699455466 0.958964664362 | |
| -402 22.7183071681 0.958694176253 | |
| -401 22.8054007579 0.958733199369 | |
| -400 22.7803713021 0.958471976237 | |
| -399 23.027545139 0.958504838506 | |
| -398 22.8467025443 0.957991223011 | |
| -397 23.0226411489 0.957985627015 | |
| -396 23.0894818966 0.95796380271 | |
| -395 23.2497532083 0.957866374066 | |
| -394 23.3267522211 0.957734495092 | |
| -393 24.1960959144 0.959144202822 | |
| -392 25.6013756647 0.961135104777 | |
| -391 26.9308346336 0.962772823609 | |
| -390 28.2665032003 0.964184525804 | |
| -389 29.2077190077 0.965130680485 | |
| -388 29.686208324 0.965574226634 | |
| -387 29.5730662676 0.96537178003 | |
| -386 29.0144890616 0.964564436875 | |
| -385 29.128299844 0.964555506913 | |
| -384 29.2560901825 0.96460457114 | |
| -383 29.1944400217 0.96433552563 | |
| -382 29.1972741458 0.964141335529 | |
| -381 29.1057860714 0.963880680096 | |
| -380 29.7317772187 0.964207759594 | |
| -379 29.7899882177 0.964080879674 | |
| -378 29.704327612 0.963897959554 | |
| -377 30.1063911091 0.964122268744 | |
| -376 30.1209438589 0.964128246596 | |
| -375 30.3669713085 0.964199792824 | |
| -374 30.6304493201 0.9644323112 | |
| -373 31.0326720377 0.964979508637 | |
| -372 31.5541508773 0.965564710262 | |
| -371 33.7476355762 0.967635395186 | |
| -370 34.23777983 0.968049569708 | |
| -369 34.9427124797 0.968513379495 | |
| -368 35.3862688278 0.968742074505 | |
| -367 35.932012865 0.969058251582 | |
| -366 36.2209024615 0.969043170592 | |
| -365 36.38286151 0.968963863045 | |
| -364 35.7045186766 0.968186740265 | |
| -363 35.7908480082 0.968110530799 | |
| -362 35.8819539534 0.96798005232 | |
| -361 35.7931726268 0.967724774607 | |
| -360 35.9061554629 0.967598787219 | |
| -359 29.9722319524 0.961047598742 | |
| -358 30.0969971022 0.960895081928 | |
| -357 30.037639716 0.96060841516 | |
| -356 30.0810113683 0.960335520007 | |
| -355 30.2072095023 0.960211837282 | |
| -354 30.237111104 0.960154087039 | |
| -353 30.0909148807 0.959689320816 | |
| -352 30.2982517594 0.959737817354 | |
| -351 30.4311689966 0.959594034557 | |
| -350 30.6503518772 0.959376689381 | |
| -349 30.8015157787 0.959201357366 | |
| -348 30.8998821769 0.958990707184 | |
| -347 30.2746234436 0.957989531067 | |
| -346 29.6406075853 0.956690606236 | |
| -345 29.7153138235 0.956359227825 | |
| -344 29.5800082795 0.955883301405 | |
| -343 29.5972359329 0.955473436331 | |
| -342 29.7881094163 0.955440676799 | |
| -341 28.5809636022 0.953295812404 | |
| -340 28.2260293603 0.952458568948 | |
| -339 28.4739674553 0.952430239248 | |
| -338 28.9753845174 0.952881692607 | |
| -337 28.8446326784 0.952443232507 | |
| -336 28.7342610579 0.951812737778 | |
| -335 27.3278030761 0.94874410582 | |
| -334 27.4434608158 0.948579577948 | |
| -333 27.3146196223 0.947997039772 | |
| -332 27.1897270961 0.947411180754 | |
| -331 26.9698118014 0.946446669766 | |
| -330 27.229436678 0.946418387025 | |
| -329 27.4402764067 0.946516927685 | |
| -328 27.3928287106 0.946093493521 | |
| -327 27.6036684393 0.946057043043 | |
| -326 27.5996879279 0.945556191779 | |
| -325 27.6926726746 0.945222007564 | |
| -324 25.9837913575 0.941448383437 | |
| -323 26.7772505812 0.942893367677 | |
| -322 27.9415979365 0.944748979183 | |
| -321 29.5015125943 0.947254669498 | |
| -320 31.1606534408 0.949755483151 | |
| -319 32.7948603637 0.951937649171 | |
| -318 33.9979938222 0.95320685717 | |
| -317 34.5228162914 0.953624019498 | |
| -316 34.719676464 0.953751309128 | |
| -315 34.9642072413 0.953526016999 | |
| -314 35.2976467217 0.953502575454 | |
| -313 35.6222335446 0.9534121294 | |
| -312 35.9957965799 0.953424366003 | |
| -311 36.4922141197 0.953555373887 | |
| -310 36.5077540362 0.953312562647 | |
| -309 36.7305034551 0.953274015825 | |
| -308 37.0511097666 0.953010048652 | |
| -307 37.2551348597 0.952856730742 | |
| -306 37.7160462376 0.952972372131 | |
| -305 38.2174632997 0.953026447521 | |
| -304 38.1259752253 0.952410855055 | |
| -303 38.5293443302 0.952403169512 | |
| -302 38.4555615706 0.951758484638 | |
| -301 38.4823106073 0.951316209556 | |
| -300 38.6558927491 0.951126847949 | |
| -299 38.9007419673 0.950978188966 | |
| -298 39.2248511289 0.950899711868 | |
| -297 39.2674585231 0.950579365016 | |
| -296 39.459542082 0.950367625606 | |
| -295 39.8389644301 0.950318352244 | |
| -294 40.1373117218 0.950254787009 | |
| -293 40.5650097124 0.950292966061 | |
| -292 40.7126707639 0.950070190828 | |
| -291 41.0952775213 0.95006724906 | |
| -290 40.5416998376 0.94888373689 | |
| -289 36.4240359201 0.942595430091 | |
| -288 36.8994363596 0.942587370655 | |
| -287 33.0698977805 0.935465223438 | |
| -286 33.3666210235 0.935391711491 | |
| -285 33.6569754482 0.935400521116 | |
| -284 34.1067732382 0.935266967857 | |
| -283 34.3129000414 0.935077483718 | |
| -282 34.5827150272 0.935028150215 | |
| -281 34.7971212941 0.93491530811 | |
| -280 35.5143139191 0.935382820109 | |
| -279 35.0831130784 0.934016789547 | |
| -278 35.4038467662 0.933990855433 | |
| -277 35.625163201 0.933764346481 | |
| -276 35.531382352 0.932936117458 | |
| -275 35.8209725185 0.932687602799 | |
| -274 35.7232111582 0.931786237044 | |
| -273 35.0215266057 0.929535394702 | |
| -272 35.3159570742 0.929238388354 | |
| -271 35.5035187721 0.92905075898 | |
| -270 35.5707098048 0.928740771859 | |
| -269 35.0344234627 0.927060455452 | |
| -268 35.3273254148 0.926895180791 | |
| -267 35.5873005764 0.926698065346 | |
| -266 34.9514696048 0.924869621538 | |
| -265 34.9291150527 0.923877315568 | |
| -264 35.2142152024 0.923346134761 | |
| -263 35.570072923 0.923334917924 | |
| -262 35.9824539057 0.923431009767 | |
| -261 39.7878228195 0.929936884214 | |
| -260 40.1789637933 0.929721920563 | |
| -259 40.5157150591 0.929382613975 | |
| -258 40.792535745 0.92882347297 | |
| -257 40.6876413082 0.927773379059 | |
| -256 41.210234691 0.927844121103 | |
| -255 41.8439639525 0.927942682361 | |
| -254 42.7376046875 0.928737023035 | |
| -253 43.8901378849 0.929687211278 | |
| -252 44.1838677833 0.929415280297 | |
| -251 45.0040760437 0.929898589883 | |
| -250 45.5870458236 0.929998906648 | |
| -249 45.9702576187 0.929542585046 | |
| -248 46.3152565042 0.929061752376 | |
| -247 46.7642263478 0.928686414992 | |
| -246 47.5120529886 0.929022567856 | |
| -245 48.0659491131 0.928831177094 | |
| -244 48.5923000987 0.928637379145 | |
| -243 49.2775531 0.928613734527 | |
| -242 49.58367035 0.928074761148 | |
| -241 50.046364997 0.92790870283 | |
| -240 50.6714008216 0.92771256146 | |
| -239 50.3672579053 0.926143742625 | |
| -238 50.9417890011 0.926163338147 | |
| -237 50.7638123746 0.924977514129 | |
| -236 51.0392000764 0.924368557559 | |
| -235 51.2649746839 0.923671476001 | |
| -234 51.2964048021 0.922670853956 | |
| -233 51.6313091106 0.922174192647 | |
| -232 52.0465879056 0.921660755338 | |
| -231 52.6327739388 0.921364371165 | |
| -230 53.0809158361 0.920866153935 | |
| -229 52.6789478712 0.919280767809 | |
| -228 52.9218227558 0.918606748402 | |
| -227 53.2714390345 0.918074111325 | |
| -226 53.6605101423 0.917421970779 | |
| -225 54.1463872878 0.916902772689 | |
| -224 54.0394866732 0.915894183686 | |
| -223 54.4544470274 0.915536168999 | |
| -222 54.5476546827 0.914687158476 | |
| -221 54.8930993854 0.914141936346 | |
| -220 53.2907683979 0.910411462946 | |
| -219 53.9297200904 0.910191125862 | |
| -218 54.4284622488 0.909783877829 | |
| -217 55.0652803872 0.909498812512 | |
| -216 55.685507754 0.909199083456 | |
| -215 56.4115848804 0.908955321975 | |
| -214 57.641562908 0.909461335765 | |
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