nimezhu’s gists

nimezhu / iotest.go

Created October 23, 2016 03:35

Reading data from stdin or a file in Go

	/*
	If no filename given as argument, read from stdin. Allows use as piped tool.

	mashbridge@hex iotest$ go build iotest.go
	mashbridge@hex iotest$ ./iotest x.txt
	file data: foo bar

	mashbridge@hex iotest$ ./iotest < x.txt
	stdin data: foo bar

nimezhu / mat64_nmf.go

Last active July 21, 2016 18:32

mat64 NMF ( translated from go.matrix NMF https://gist.github.com/r9y9/9030922 )

	package main

	import (
	"fmt"
	. "github.com/gonum/matrix/mat64"
	)

	func NewElemDense(r int, c int, v float64) *Dense {
	data := make([]float64, r*c)
	for i := range data {

nimezhu / README

Created March 11, 2016 17:51 — forked from adilapapaya/README

Export Table Data to CSV using Javascript

Example code for exporting data in a table to a csv file.

nimezhu / bed_union.py

Created January 29, 2016 21:50

	#!/usr/bin/env python
	# Programmer : zhuxp
	# Date:
	# Last-modified: 01-29-2016, 16:48:48 EST
	from __future__ import print_function
	VERSION="0.1"
	import os,sys,argparse
	from bam2x.Annotation import BED6
	from bam2x import TableIO,Tools
	from bam2x import IO

nimezhu / spectral_mid.py

Last active January 9, 2016 01:18

	#!/usr/bin/env python
	# Programmer : zhuxp
	# Date:
	# Last-modified: 12-25-2015, 22:16:09 EST
	from __future__ import print_function
	VERSION="0.1"
	import os,sys,argparse
	from bam2x.Annotation import BED12
	from bam2x import TableIO,Tools
	from bam2x import IO

nimezhu / spectral.py

Created December 11, 2015 17:08

	#!/usr/bin/env python
	# Programmer : zhuxp
	# Date:
	# Last-modified: 12-11-2015, 10:41:26 EST
	from __future__ import print_function
	VERSION="0.1"
	import os,sys,argparse
	from bam2x.Annotation import BED12
	from bam2x import TableIO,Tools
	from bam2x import IO

nimezhu / spectral_mRNA_coord_distance.py

Created December 9, 2015 02:19

	#!/usr/bin/env python
	# Programmer : zhuxp
	# Date:
	# Last-modified: 12-07-2015, 11:27:31 EST
	from __future__ import print_function
	VERSION="0.1"
	import os,sys,argparse
	from bam2x.Annotation import BED12
	from bam2x import TableIO,Tools
	from bam2x import IO

nimezhu / geneset_api.js

Last active November 21, 2015 16:37

restapi server side example

	var qs = require('querystring');
	var sqlite3 = require('sqlite3').verbose();
	var dbs = ["test.db","elisa.db","mouse.geneset.db"];
	var db={};
	dbs.forEach(function(d){
	db[d] = new sqlite3.Database("data/"+d);
	db[d].serialize(function() {
	//db.run("CREATE TABLE IF NOT EXISTS geneset (key TEXT, value INTEGER)");
	});
	})

nimezhu / motifWeb.js

Last active November 13, 2015 01:33

nimezhu / pub.css

Last active October 25, 2015 22:43

render pubmed search

Zhu Xiaopeng nimezhu