nimezhu’s gists

nimezhu / closure.html

Created October 16, 2015 21:51

nimezhu / DataLayout.html

Created October 16, 2015 21:32

	<!DOCTYPE html>
	<html>
	<head lang="en">
	<meta charset="UTF-8">
	<title>Data Table Template</title>
	<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script>
	<script src="http://d3js.org/d3.v3.min.js"></script>
	<script src="../lib/snowflake.js"></script>
	<script src="../lib/angular.min.js"></script>
	<script src="../lib/angular-ui-bootstrap-modal.js"></script>

nimezhu / LpsSetView.html

Last active November 13, 2015 15:50

	<html>
	<head>
	<meta charset="UTF-8">
	<title>Mouse Human Corepromoter Motifs Viewer</title>
	<script src="http://ajax.googleapis.com/ajax/libs/jquery/2.1.3/jquery.min.js"></script>
	<script src="//code.jquery.com/ui/1.11.4/jquery-ui.js"></script>
	<script src="http://d3js.org/d3.v3.min.js"></script>
	<script src="../../lib/snowflake.js"></script>
	<script src="../../lib/angular.min.js"></script>
	<script src="../../lib/angular-ui-bootstrap-modal.js"></script>

nimezhu / index.html

Last active September 25, 2015 15:58

get source into data table , template

	<!DOCTYPE html>
	<html>
	<head lang="en">
	<meta charset="UTF-8">
	<title>ClsViz Data Browser</title>
	<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script>
	<script src="http://d3js.org/d3.v3.min.js"></script>
	<script src="../../lib/snowflake.js"></script>
	</head>
	<body>

nimezhu / index.html

Created September 24, 2015 05:02

	<!DOCTYPE html>
	<html>
	<head>
	<title>query genes to bar plot</title>
	<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script>
	<script src="http://d3js.org/d3.v3.min.js" charset="utf-8"></script>
	<script src="../lib/snowflake.js" charset="utf-8"></script>
	</head>
	<body>
	<h2></h2>

nimezhu / index.html

Last active September 21, 2015 03:20

LocalStorage Save Map Example

	<html>
	<head>
	<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script>
	</head>
	<body>
	<div>
	<input type="text" id="in"></input>
	<button id="add" value="add" >add</button>
	<button id="clear" value="clear" >clear</button>
	<button id="load" value="load" >load</button>

nimezhu / Figure1.html

Last active September 16, 2015 15:46

Template for File System for Snowflakes Panels

	<!DOCTYPE html>
	<html>
	<head lang="en">
	<meta charset="UTF-8">
	<title>Figure1</title>
	<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script>
	<script src="http://d3js.org/d3.v3.min.js"></script>
	<script src="http://ajax.bam2x.net/libs/d3.box.js"></script>
	<script src="../lib/snowflake.js"></script>
	<style>

nimezhu / akmeans_v7.py

Created July 29, 2015 17:45

	#!/usr/bin/env python
	# Programmer : zhuxp
	# Date:
	# Last-modified: 07-29-2015, 13:42:12 EDT
	from __future__ import print_function
	VERSION="0.6"
	import os,sys,argparse
	from bam2x import TableIO,Tools
	from bam2x import IO
	import numpy as np

nimezhu / scatter_heatmap.html

Created July 18, 2015 17:01

	<!DOCTYPE html>
	<html lang="en">
	<head>
	<meta charset="UTF-8">
	<title>Scatter HeatMap Demo</title>
	<script src="http://d3js.org/d3.v3.min.js"></script>
	<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.9.1/jquery.min.js"></script>
	</head>
	<body>
	<div id="canvas">

nimezhu / cmpseries_pipeline.sh

Last active August 29, 2015 14:25

compare two time course expression, find the changing genes, clustering them and find the enriched motif

	if [[ $# -lt 2 ]] ; then
	echo "Usage: cmpseries_pipeline.sh SeriesA.tsv SeriesB.tsv"
	exit 0
	fi
	x=${1##/} i=${x%.}
	y=${2##*/}
	j=${y%.*}
	resp="${i}_vs_${j}.resp.txt"
	echo "respondGenes.py -i $1 $2 -o $resp"
	respondGenes.py -i $1 $2 -o $resp

Zhu Xiaopeng nimezhu