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June 17, 2019 14:58
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kb wos second dataset
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| --- | |
| title: "Dataset two" | |
| author: "Najko" | |
| date: '2019-06-17' | |
| output: | |
| html_document: | |
| keep_md: yes | |
| --- | |
| ```r | |
| library(tidyverse) | |
| library(rcrossref) | |
| library(roadoi) | |
| ``` | |
| ### Load data | |
| ```r | |
| table_2 <- readr::read_csv("199_with_valid_non_duplicated_DOI_WOS_missing_from_Unpaywall_Crossref.csv") | |
| ``` | |
| ### Check, which registration agency minted the DOI | |
| ```r | |
| cr_agency <- purrr::map(table_2$DOI, rcrossref::cr_agency) | |
| cr_agency_df <- tibble(doi = purrr::map_chr(cr_agency, c("DOI")), | |
| agency = purrr::map_df(cr_agency, c("agency")) | |
| ) | |
| cr_agency_df <- tibble(doi = cr_agency_df$doi, | |
| doi_agency_id = cr_agency_df$agency$id, | |
| doi_agency_label = cr_agency_df$agency$label) | |
| cr_agency_df %>% | |
| count(doi_agency_label) | |
| #> # A tibble: 2 x 2 | |
| #> doi_agency_label n | |
| #> <chr> <int> | |
| #> 1 Crossref 195 | |
| #> 2 KISTI 4 | |
| ``` | |
| ### Check Crossref-registered DOIs if the publisher provided metadata to Crossref | |
| ```r | |
| cr_works_df <- cr_agency_df %>% | |
| filter(doi_agency_label == "Crossref") %>% | |
| .$doi %>% | |
| rcrossref::cr_works() | |
| cr_works_df$data %>% | |
| filter(!is.na(doi)) | |
| #> # A tibble: 195 x 34 | |
| #> alternative.id container.title created deposited published.online doi | |
| #> <chr> <chr> <chr> <chr> <chr> <chr> | |
| #> 1 su8040325 Sustainability 2016-0… 2018-03-… 2016-03-31 10.3… | |
| #> 2 <NA> Journal of Env… 2011-0… 2019-06-… <NA> 10.3… | |
| #> 3 <NA> World Journal … 2017-1… 2017-11-… <NA> 10.4… | |
| #> 4 <NA> Rendiconti Lin… 2011-0… 2018-03-… <NA> 10.4… | |
| #> 5 <NA> Folia Phoniatr… 2017-0… 2017-10-… 2017-06-29 10.1… | |
| #> 6 <NA> Current Issues… 2018-0… 2018-10-… <NA> 10.1… | |
| #> 7 10.3892/ol.20… Oncology Lette… 2016-0… 2018-01-… 2016-04-28 10.3… | |
| #> 8 <NA> Dental Materia… 2016-0… 2017-06-… <NA> 10.4… | |
| #> 9 <NA> Annals of Math… 2011-0… 2019-06-… 2011-07-01 10.4… | |
| #> 10 <NA> Türkiye Fiziks… 2018-0… 2018-02-… 2016-12-19 10.5… | |
| #> # … with 185 more rows, and 28 more variables: indexed <chr>, issn <chr>, | |
| #> # issue <chr>, issued <chr>, member <chr>, page <chr>, prefix <chr>, | |
| #> # publisher <chr>, reference.count <chr>, score <chr>, source <chr>, | |
| #> # title <chr>, type <chr>, url <chr>, volume <chr>, author <list>, | |
| #> # link <list>, license <list>, reference <list>, published.print <chr>, | |
| #> # subject <chr>, update.policy <chr>, abstract <chr>, assertion <list>, | |
| #> # archive <chr>, subtitle <chr>, isbn <chr>, funder <list> | |
| ``` | |
| ### Check Unpaywall | |
| ```r | |
| upywall <- cr_agency_df %>% | |
| filter(doi_agency_label == "Crossref") %>% | |
| .$doi %>% | |
| roadoi::oadoi_fetch(email = "najko.jahn@gmail.com") | |
| upywall | |
| #> # A tibble: 195 x 16 | |
| #> doi best_oa_location oa_locations data_standard is_oa genre | |
| #> <chr> <list> <list> <int> <lgl> <chr> | |
| #> 1 10.3… <tibble [1 × 9]> <tibble [3 … 2 TRUE jour… | |
| #> 2 10.3… <tibble [0 × 0]> <tibble [0 … 2 FALSE jour… | |
| #> 3 10.4… <tibble [1 × 11… <tibble [2 … 2 TRUE jour… | |
| #> 4 10.4… <tibble [1 × 8]> <tibble [1 … 2 TRUE jour… | |
| #> 5 10.1… <tibble [0 × 0]> <tibble [0 … 2 FALSE jour… | |
| #> 6 10.1… <tibble [1 × 9]> <tibble [2 … 2 TRUE jour… | |
| #> 7 10.3… <tibble [1 × 8]> <tibble [3 … 2 TRUE jour… | |
| #> 8 10.4… <tibble [1 × 8]> <tibble [1 … 2 TRUE jour… | |
| #> 9 10.4… <tibble [1 × 8]> <tibble [3 … 2 TRUE jour… | |
| #> 10 10.5… <tibble [1 × 7]> <tibble [1 … 2 TRUE jour… | |
| #> # … with 185 more rows, and 10 more variables: journal_is_oa <lgl>, | |
| #> # journal_is_in_doaj <lgl>, journal_issns <chr>, journal_name <chr>, | |
| #> # publisher <chr>, title <chr>, year <chr>, updated <chr>, | |
| #> # non_compliant <list>, authors <list> | |
| ``` |
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