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from pyspark.sql.types import * | |
from pyspark.sql.functions import * | |
#Flatten array of structs and structs | |
def flatten(df): | |
# compute Complex Fields (Lists and Structs) in Schema | |
complex_fields = dict([(field.name, field.dataType) | |
for field in df.schema.fields | |
if type(field.dataType) == ArrayType or type(field.dataType) == StructType]) | |
while len(complex_fields)!=0: | |
col_name=list(complex_fields.keys())[0] | |
print ("Processing :"+col_name+" Type : "+str(type(complex_fields[col_name]))) | |
# if StructType then convert all sub element to columns. | |
# i.e. flatten structs | |
if (type(complex_fields[col_name]) == StructType): | |
expanded = [col(col_name+'.'+k).alias(col_name+'_'+k) for k in [ n.name for n in complex_fields[col_name]]] | |
df=df.select("*", *expanded).drop(col_name) | |
# if ArrayType then add the Array Elements as Rows using the explode function | |
# i.e. explode Arrays | |
elif (type(complex_fields[col_name]) == ArrayType): | |
df=df.withColumn(col_name,explode_outer(col_name)) | |
# recompute remaining Complex Fields in Schema | |
complex_fields = dict([(field.name, field.dataType) | |
for field in df.schema.fields | |
if type(field.dataType) == ArrayType or type(field.dataType) == StructType]) | |
return df | |
df=flatten(df) | |
df.printSchema() |
Can you try gs://bucket-raw-ge/raw-ge-files/* spark splits up the dataframe to pieces sometime. And you are compressing these files with snappy. I dont think sparks see the whole dataframe that you are working on now.
same error @bjornjorgensen and i already try passing the json format and not the parquet format as well.
like:
json_file_path = 'gs://bucket-dataproc-ge/great_expectations/validations/teste_tabela_ge/none/20220201T131502.600412Z/b82d2b0bc0d5deaf8922db55075f898b.json'
df2 = spark.read.option("multiLine", "true").option("mode", "PERMISSIVE").option("inferSchema", "true").json(json_file_path)
df2.printSchema()
and passing df2 to the function.
I'm running this on a dataproc cluster with jupyter notebook, I don't know if this is important.
Image from cluster 2.0.27-debian10
oh, when I use this function I disable line nr 12 place a # in front of it.
There an error in string https://itsmycode.com/python-typeerror-str-object-is-not-callable-solution/
thanks @bjornjorgensen for the help.
I just kill the cluster and created another and the function start running again with the same files 🤣
Hi,
I get the below error. Any suggestions how to avoid it. I have nodes that have multiple nodes within it. It could go upto 3 or 4 levels
root
|-- code: string (nullable = true)
|-- rule_id: string (nullable = true)
|-- from: date (nullable = true)
|-- _to: date (nullable = true)
|-- type: string (nullable = true)
|-- definition: string (nullable = true)
|-- description: string (nullable = true)
|-- created_on: timestamp (nullable = true)
|-- creator: string (nullable = true)
|-- modified_on: timestamp (nullable = true)
|-- modifier: string (nullable = true)
IndexError Traceback (most recent call last)
<command-4235716148475136> in <module>
----> 1 flatten_df = flatten(ar)
2 flatten_df.show()
<command-4320286398733830> in flatten(df)
10 ])
11
---> 12 qualify = list(complex_fields.keys())[0] + "_"
13
14 while len(complex_fields) != 0:
IndexError: list index out of range
Line 21: #if ArrayType then add the Array Elements as Rows using the explode function
Is there a way we can add Array Elements as columns rather than rows.
Tried to use posexplode to later pivot the table without success.
I tried to use df=df.selectExpr("*", posexplode_outer(col_name).alias("position",col_name)) but getting error
"TypeError: Column is not iterable"
I have updated this function and add a fix for mapType
I have also created a JIRA for this.
help me
When running the code above, everything worked, but I need to treat the data that comes in timestamp format to date. Can someone help me?
Exit:
_v | 0
action | To create
data_updatedAt | 2023-01-26T15:10:...
date$date | 1674745838876 <<<<<<<
I need:
_v | 0
action | To create
data_updatedAt | 2023-01-26T15:10:...
date$date | 2023-01-26T15:10:... <<<<<<<
Thanks a lot for your work, it works great.
Hello, I tried to use mapType in Spark Streaming but it's not working due to an issue in the code.
Below is the one giving issue while doing in Spark Streaming :
keys = list(map(lambda row: row[0], keys_df.collect()))
Please let me know the best option to resolve it in Spark Structure Steaming.
This function flatten(), fails when there is nested array inside array, It failed to flatten these, "user_mentions": [
{
"screen_name": "AshJone15461246",
"name": "Ash Jones",
"id": 1589564629369462800,
"id_str": "1589564629369462784",
"indices": [
0,
16
]
},
{
"screen_name": "BariAWilliams",
"name": "Bärí A. Williams, Esq.",
"id": 4639656854,
"id_str": "4639656854",
"indices": [
17,
31
]
},
{
"screen_name": "bjorn_hefnoll",
"name": "Björn",
"id": 1374096417954881500,
"id_str": "1374096417954881548",
"indices": [
32,
46
]
},
{
"screen_name": "SpencerAlthouse",
"name": "Spencer Althouse",
"id": 38307346,
"id_str": "38307346",
"indices": [
47,
63
]
}
].
thanks @bjornjorgensen i have been run this code for 15 days in the same file in jupyter notebook and working just fine, but a few days ago i got this error in the same file.
And the weird thing, aftter a few hours or days the same code in the same file starting to working again.
this is my code before to pass to this function:
path_parquet = 'gs://bucket-raw-ge/raw-ge-files/part-00000-5c473dc6-fa7c-465d-a8c2-0a6ea2793a58-c000.snappy.parquet'
df3 = spark.read.parquet(path_parquet)
df3.printSchema()
and this is my json schema:
root
|-- meta: struct (nullable = true)
| |-- active_batch_definition: struct (nullable = true)
| | |-- batch_identifiers: struct (nullable = true)
| | | |-- batch_id: string (nullable = true)
| | |-- data_asset_name: string (nullable = true)
| | |-- data_connector_name: string (nullable = true)
| | |-- datasource_name: string (nullable = true)
| |-- batch_markers: struct (nullable = true)
| | |-- ge_load_time: string (nullable = true)
| |-- batch_spec: struct (nullable = true)
| | |-- batch_data: string (nullable = true)
| | |-- data_asset_name: string (nullable = true)
| |-- expectation_suite_name: string (nullable = true)
| |-- great_expectations_version: string (nullable = true)
| |-- run_id: struct (nullable = true)
| | |-- run_name: string (nullable = true)
| | |-- run_time: string (nullable = true)
| |-- validation_time: string (nullable = true)
|-- results: array (nullable = true)
| |-- element: struct (containsNull = true)
| | |-- exception_info: struct (nullable = true)
| | | |-- exception_message: string (nullable = true)
| | | |-- exception_traceback: string (nullable = true)
| | | |-- raised_exception: boolean (nullable = true)
| | |-- expectation_config: struct (nullable = true)
| | | |-- expectation_context: struct (nullable = true)
| | | | |-- description: string (nullable = true)
| | | |-- expectation_type: string (nullable = true)
| | | |-- kwargs: struct (nullable = true)
| | | | |-- batch_id: string (nullable = true)
| | | | |-- column: string (nullable = true)
| | | | |-- column_list: array (nullable = true)
| | | | | |-- element: string (containsNull = true)
| | | | |-- column_set: array (nullable = true)
| | | | | |-- element: string (containsNull = true)
| | | | |-- parse_strings_as_datetimes: boolean (nullable = true)
| | | | |-- strictly: boolean (nullable = true)
| | | | |-- value: long (nullable = true)
| | | | |-- value_set: array (nullable = true)
| | | | | |-- element: string (containsNull = true)
| | |-- result: struct (nullable = true)
| | | |-- details: struct (nullable = true)
| | | | |-- mismatched: string (nullable = true)
| | | | |-- value_counts: array (nullable = true)
| | | | | |-- element: struct (containsNull = true)
| | | | | | |-- count: long (nullable = true)
| | | | | | |-- value: string (nullable = true)
| | | |-- element_count: long (nullable = true)
| | | |-- missing_count: long (nullable = true)
| | | |-- missing_percent: double (nullable = true)
| | | |-- observed_value: string (nullable = true)
| | | |-- partial_unexpected_counts: array (nullable = true)
| | | | |-- element: struct (containsNull = true)
| | | | | |-- count: long (nullable = true)
| | | | | |-- value: string (nullable = true)
| | | |-- partial_unexpected_index_list: string (nullable = true)
| | | |-- partial_unexpected_list: array (nullable = true)
| | | | |-- element: string (containsNull = true)
| | | |-- unexpected_count: long (nullable = true)
| | | |-- unexpected_percent: double (nullable = true)
| | | |-- unexpected_percent_nonmissing: double (nullable = true)
| | | |-- unexpected_percent_total: double (nullable = true)
| | |-- success: boolean (nullable = true)
|-- statistics: struct (nullable = true)
| |-- evaluated_expectations: long (nullable = true)
| |-- success_percent: double (nullable = true)
| |-- successful_expectations: long (nullable = true)
| |-- unsuccessful_expectations: long (nullable = true)
|-- success: boolean (nullable = true)