Created
February 7, 2018 01:12
-
-
Save oesteban/30ea125504dcea3683cb99e611da6c90 to your computer and use it in GitHub Desktop.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Find native-to-freesurfer transform matrix | |
| tkregister2 --mov out/fmriprep/sub-06/anat/sub-06_T1w_preproc.nii.gz --targ out/freesurfer/sub-06/mri/orig.mgz --reg native2fs.dat --noedit --regheader --s sub-06 | |
| # Convert to lta | |
| lta_convert --src out/fmriprep/sub-06/anat/sub-06_T1w_preproc.nii.gz --trg out/freesurfer/sub-06/mri/orig.mgz --inreg native2fs.dat --outlta native2fs.lta --subject sub-06 | |
| # Concatenate BOLD-to-native and native-to-freesurfer | |
| mri_concatenate_lta -out_type 1 -subject sub-06 work/fmriprep_wf/single_subject_06_wf/func_preproc_ses_pre_task_rest_run_01_wf/bold_reg_wf/bbreg_wf/bbregister/uni_xform_masked_bbreg_sub-06.lta native2fs.lta bold2fs.lta |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment