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| antsRegistration -d 3 -m MI[sub-EMV00017_run-01_T2w_preproc.nii.gz,time2_hmc_avg_inu.nii.gz,1.0,32,Random,0.2] -t Affine[0.01] -c [100x100x100,1.0e-8,25] -s 0.6x0.4x0.2mm -f 2x1x1 -l -x [sub-EMV00017_run-01_T2w_brainmask.nii.gz] -u -v -o ts2_epi0 -a 1 | |
| antsRegistration -d 3 -m MI[sub-EMV00017_run-01_T2w_preproc.nii.gz,time2_hmc_avg_inu.nii.gz,0.5,32,Random,0.2] -m CC[sub-EMV00017_run-01_T2w_preproc.nii.gz,time2_hmc_avg_inu.nii.gz,0.5,5,Random,0.2] -t SyN[1,2.0,1.75] -c [200x50,1.0e-8,5] -s 0.4x0mm -f 2x1 -m MI[sub-EMV00017_run-01_T2w_preproc.nii.gz,time2_hmc_avg_inu.nii.gz,0.5,32,Random,0.2] -m CC[sub-EMV00017_run-01_T2w_preproc.nii.gz,time2_hmc_avg_inu.nii.gz,0.5,5,Random,0.2] -t SyN[1,1.0,0.75] -c [200x50,1.0e-8,5] -s 0.6x0.2mm -f 2x1 -l -x [sub-EMV00017_run-01_T2w_brainmask.nii.gz] -l -x [sub-EMV00017_run-01_T2w_brainmask.nii.gz] -u -v -o ts2_epiA -a 1 -r ts2_epi0Composite.h5 &> ts2.log | |
| antsApplyTransforms -d 3 -i ~/Data/LC_dfMRI/tpl-Schwarz/tpl-Schwarz_rois.nii.gz -r time2_hmc_avg_inu.nii.gz -o time2_rois.nii.gz -n MultiLabel -t ts2_epiAInverseComposite.h5 inl2Composite.h5 |
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