vitessce-image-viewer-demo.imjoy.html

<docs lang="markdown">
[TODO: write documentation for this plugin.]
</docs>

<config lang="json">
{
  "name": "Viv-demo",
  "type": "native-python",
  "version": "0.1.0",
  "description": "[TODO: describe this plugin with one sentence.]",
  "tags": [],
  "ui": "",
  "cover": "",
  "inputs": null,
  "outputs": null,
  "flags": [],
  "icon": "extension",
  "api_version": "0.1.8",
  "env": "",
  "permissions": [],
  "requirements": [],
  "dependencies": []
}
</config>

<script lang="python">
from imjoy import api

covidTiffInfo = {
    "url":
    'https://vitessce-demo-data.storage.googleapis.com/test-data/12448_G1HR_Mesh003.ome.tif',
    "dimensions": [
    {
      "field": 'channel',
      "type": 'nominal',
      "values": [0]
    },
    { "field": 'y', "type": 'quantitative', "values": None },
    { "field": 'x', "type": 'quantitative', "values": None }
  ],
  "selections": [{ "channel": 0 }],
  "isPublic": True,
  "isPyramid": True,
  "description": 'Covid-19 Primary Gut Epithelial Stem Cells (OME-TIFF)',
  "initialViewState": {
    "zoom": -7,
    "target": [50000, 50000]
  }
};
    
class ImJoyPlugin():
    async def setup(self):
        pass

    async def run(self, ctx):
        viewer = await api.showDialog(src="https://oeway.github.io/vitessce-image-viewer/")
        viewer.loadSource('covid tiff', covidTiffInfo)

api.export(ImJoyPlugin())
</script>