The docker file for running ImJoy Engine on Kubernetes cluster

Dockerfile

FROM nvcr.io/nvidia/cuda:9.0-cudnn7-devel-ubuntu16.04

# System packages
RUN apt-get update && apt-get install -y \
        bzip2 \
		bc \
		build-essential \
		cmake \
		curl \
		g++ \
		gfortran \
		git \
		libffi-dev \
		libfreetype6-dev \
		libhdf5-dev \
		libjpeg-dev \
		liblcms2-dev \
		libopenblas-dev \
		liblapack-dev \
		libpng12-dev \
		libssl-dev \
		libtiff5-dev \
		libwebp-dev \
		libzmq3-dev \
		libsm6 \
		libxext6 \
		libxrender-dev \
		pkg-config \
		software-properties-common \
		unzip \
		wget \
		&& \
	apt-get clean && \
	apt-get autoremove && \
	rm -rf /var/lib/apt/lists/* && \
# Link BLAS library to use OpenBLAS using the alternatives mechanism (https://www.scipy.org/scipylib/building/linux.html#debian-ubuntu)
	update-alternatives --set libblas.so.3 /usr/lib/openblas-base/libblas.so.3

RUN addgroup --gid 1001 python && \
    useradd --uid 1001 --gid 1001 python

RUN mkdir /imjoy-engine /home/python
WORKDIR /imjoy-engine




# Install miniconda to /miniconda
RUN curl -LO https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
RUN bash Miniconda3-latest-Linux-x86_64.sh -p /imjoy-engine/miniconda -b
RUN rm Miniconda3-latest-Linux-x86_64.sh
ENV PATH=/imjoy-engine/miniconda/bin:${PATH}
RUN conda update -y conda

COPY docker-entrypoint.sh /imjoy-engine/docker-entrypoint
RUN ["chmod", "+x", "/imjoy-engine/docker-entrypoint"]


# Python packages from conda
RUN conda update -y conda && \
    conda update -y pip && \
    conda install -y python=3.6 numpy scipy git psutil && \
    pip install scikit-image Pillow && \
    pip install git+https://github.com/oeway/ImJoy-Engine#egg=imjoy

RUN chown 1001:1001 -R /imjoy-engine /home/python
EXPOSE 8080
USER 1001
ENTRYPOINT ["/imjoy-engine/docker-entrypoint"]