Wei Ouyang oeway

I am working with Deep Learning based image analysis and modeling, excited about biology, deep neural nets, open source, Python and JavaScript.

241 followers · 26 following

Science For Life Laboratory
Stockholm

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oeway / CellPose-Segmentation.imjoy.html

Last active December 14, 2020 00:37

	<docs lang="markdown">
	# CellPose

	A generalist algorithm for cell and nucleus segmentation.

	https://github.com/MouseLand/cellpose

	</docs>

	<config lang="json">

oeway / SharedWebPython.imjoy.html

Last active December 14, 2020 01:21

	<config lang="json">
	{
	"name": "SharedWebPython",
	"type": "web-python",
	"version": "0.1.1",
	"api_version": "0.1.2",
	"description": "Sunning plugins in a shared web-python worker",
	"tags": [],
	"ui": "",
	"inputs": null,

oeway / ImageJScriptEditor.imjoy.html

Last active May 20, 2021 14:49

	<config lang="json">
	{
	"name": "ImageJScriptEditor",
	"type": "web-worker",
	"tags": [],
	"ui": "",
	"version": "0.1.2",
	"cover": "",
	"description": "A Script Editor for ImageJ.JS",
	"icon": "extension",

oeway / VizarrReferenceStore.imjoy.html

Last active March 1, 2021 23:13

	<docs>
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "VizarrReferenceStore",
	"type": "web-worker",
	"tags": [],
	"ui": "",

oeway / LuCa-7color_Scan1.ome.tif_offsets.json

Last active March 24, 2021 16:58 — forked from manzt/LuCa-7color_Scan1.ome.tif_offsets.json

experimental reference spec maker for ome-tiff

{".zgroup": "{\n    \"zarr_format\": 2\n}", ".zattrs": "{\n    \"multiscales\": [\n        {\n            \"datasets\": [\n                {\n                    \"path\": \"0\"\n                },\n                {\n                    \"path\": \"1\"\n                },\n                {\n                    \"path\": \"2\"\n                },\n                {\n                    \"path\": \"3\"\n                },\n                {\n                    \"path\": \"4\"\n                },\n                {\n                    \"path\": \"5\"\n                },\n                {\n                    \"path\": \"6\"\n                },\n                {\n                    \"path\": \"7\"\n                },\n                {\n                    \"path\": \"8\"\n                }\n            ],\n            \"metadata\": {},\n            \"name\": \"resolution #1\",\n            \"version\": \"0.1\"\n        }\n    ]\n}", "0/.zarray": "{\n    \"chunks\": [\n        1,\n        1024,\n        10

oeway / UNet2DNucleiBroad.md

Last active February 5, 2021 11:04

We couldn’t find that file to show.

oeway / OpenFlexureSnapImageTemplate.imjoy.html

Created February 14, 2021 20:42

	<docs>
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "OpenFlexureSnapImageTemplate",
	"type": "web-worker",
	"tags": [],
	"ui": "",

oeway / OpenFlexureScriptEditor.imjoy.html

Last active February 14, 2021 21:25

	<config lang="json">
	{
	"name": "Script Editor",
	"type": "web-worker",
	"tags": [],
	"ui": "",
	"version": "0.1.0",
	"cover": "",
	"description": "A Script Editor for Controlling OpenFlexure Microscope with ImJoy",
	"icon": "extension",

oeway / BasicImageAnnotation.imjoy.html

Created February 15, 2021 12:56

	<docs>
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "BasicImageAnnotation",
	"type": "web-worker",
	"tags": [],
	"ui": "",

oeway / VizarrReferenceStore-Zenodo.imjoy.html

Last active October 19, 2023 03:17

Upload large files to zenodo and serve it as a zarr store (not working yet because zenodo doesn't support range header)

	<docs>
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "VizarrReferenceStore",
	"type": "web-worker",
	"tags": [],
	"ui": "",

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