This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Dummy Zarr | |
| description: A dummy zarr dataset | |
| cite: | |
| authors: | |
| - NO ONE | |
| documentation: null | |
| tags: [zarr] | |
| files: | |
| - https://gist.githubusercontent.com/manzt/d16dbac0ea3adc3c7b9b61f54fa1f78d/raw/95854058512862accb0182d4a02f86a55ad19139/ |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <docs> | |
| A hello world example for running fiji script in ImJoy. | |
| </docs> | |
| <config lang="json"> | |
| { | |
| "name": "FijiScriptHelloWorld", | |
| "type": "scijava", | |
| "tags": [], | |
| "ui": "", |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CARE Deconvolution Microtubules | |
| description: n/a | |
| date: Mon Apr 20 14:23:46 CEST 2020 | |
| authors: n/a | |
| cite: | |
| text: [n/a] | |
| doi: ['http://'] | |
| documentation: n/a | |
| cover: [''] | |
| test_input: [.\exampleImage.tiff] |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| numpy | |
| pandas | |
| scipy | |
| matplotlib | |
| ipywidgets>=7.0.0 | |
| imageio | |
| scikit-image | |
| imjoy>=0.10.0 | |
| tifffile | |
| fsspec |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <docs lang="markdown"> | |
| [TODO: write documentation for this plugin.] | |
| </docs> | |
| <config lang="json"> | |
| { | |
| "name": "Viv-demo", | |
| "type": "native-python", | |
| "version": "0.1.0", | |
| "description": "[TODO: describe this plugin with one sentence.]", |
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <docs lang="markdown"> | |
| [TODO: write documentation for this plugin.] | |
| </docs> | |
| <config lang="json"> | |
| { | |
| "name": "ITK-VTK-Viewer", | |
| "type": "native-python", | |
| "version": "0.1.0", | |
| "description": "[TODO: describe this plugin with one sentence.]", |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| from imjoy import api | |
| import imageio | |
| class ImJoyPlugin(): | |
| async def setup(self): | |
| api.log('initialized') | |
| async def run(self, ctx): | |
| # run `pip install imjoy-elfinder` and start it by running `imjoy-elfinder` before the following command | |
| fileDialog = await api.showDialog(type="ImJoy elFinder") |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| import asyncio | |
| import numpy as np | |
| class ImJoyPlugin(): | |
| async def setup(self): | |
| bridge = Bridge() | |
| self._core = bridge.get_core() | |
| self._core.set_exposure(float(100)) | |
| exposure = self._core.get_exposure() | |
| api.showMessage('MMcore loaded, exposure: ' + str(exposure)) |