Brainvoyager's fmr format to nifti conversion.

FMR_to_NII.m

% Convert FMR to NII
%
% Requires Neuroelf <http://neuroelf.net/>.

clear all;

% Set path with nii files
PATH_OUT = '/patt/to/output_folder';

% Set fmr names
PATH_FMR{1}=['/path/to/file1.fmr'];
PATH_FMR{2}=['/path/to/file2.fmr'];

%% Convert fmr to nii
disp('Converting fmr files to nii...')
for i=1:length(PATH_FMR);
    temp_fmr = xff(PATH_FMR{i});

    % Output name parsing/creating
    [i_dir, i_name , i_ext] = fileparts(PATH_FMR{i});
    i_ext = 'nii';
    out_path = fullfile(PATH_OUT, [i_name,'.',i_ext]);

    temp_fmr.Write4DNifti(out_path);
    temp_fmr.ClearObject;
    disp([out_path ' created.'])
end

disp('Finished.')