Created
April 17, 2015 11:51
-
-
Save ohofmann/a905aaf35bad35c2f99c to your computer and use it in GitHub Desktop.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #!/bin/sh | |
| #SBATCH -p defq | |
| #SBATCH -J bcb-prep-e[1-6] | |
| #SBATCH -o bcbio-ipengine.out.%%j | |
| #SBATCH -e bcbio-ipengine.err.%%j | |
| #SBATCH --cpus-per-task=5 | |
| #SBATCH --array=1-6 | |
| #SBATCH -t 05-00:00:00 | |
| #SBATCH --mem=5222 | |
| /cm/shared/apps/bcbio/20150103-devel/data/anaconda/bin/python -E -c 'import resource; cur_proc, max_proc = resource.getrlimit(resource.RLIMIT_NPROC); target_proc = min(max_proc, 10240) if max_proc > 0 else 10240; resource.setrlimit(resource.RLIMIT_NPROC, (max(cur_proc, target_proc), max_proc)); cur_hdls, max_hdls = resource.getrlimit(resource.RLIMIT_NOFILE); target_hdls = min(max_hdls, 10240) if max_hdls > 0 else 10240; resource.setrlimit(resource.RLIMIT_NOFILE, (max(cur_hdls, target_hdls), max_hdls)); from IPython.parallel.apps.ipengineapp import launch_new_instance; launch_new_instance()' --timeout=960 --IPEngineApp.wait_for_url_file=960 --EngineFactory.max_heartbeat_misses=120 --profile-dir="/scratch/ohofmann/brisbane/log/ipython" --cluster-id="47a4a4f0-7141-4dc8-ba62-6222baa6fed3" |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment