Created
June 18, 2020 15:09
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Metamorphosys Run Batch Script for Inferno
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@echo off | |
REM | |
REM Set Inferno base dir | |
REM | |
set INFERNODIR=C:\Inferno\inferno-program-1.0.0P | |
REM | |
REM Set the maximum amount of memory to assign to the mmsys script | |
REM | |
set MEMMAX=6G | |
REM | |
REM Specify directory containing .RRF or .nlm files | |
REM | |
set METADIR="%INFERNODIR%\tmp\terminology\umls\2019AB-full" | |
REM | |
REM Specify output directory | |
REM | |
set DESTDIR="%INFERNODIR%\tmp\terminology\umls_subset" | |
REM | |
REM Specify MetamorphoSys directory | |
REM | |
set MMSYS_HOME="%INFERNODIR%\tmp\terminology\umls\2019AB-full" | |
REM | |
REM Specify CLASSPATH | |
REM | |
set CLASSPATH=%MMSYS_HOME%;%MMSYS_HOME%\lib\jpf-boot.jar | |
REM | |
REM Specify JAVA_HOME | |
REM | |
set JAVA_HOME="%MMSYS_HOME%\jre\windows64" | |
REM | |
REM Specify configuration file | |
REM | |
set CONFIG_FILE="%INFERNODIR%"\resources\terminology\inferno.prop | |
REM | |
REM Call Batch MetamorphoSys | |
REM | |
if exist "%DESTDIR%" @RD /S /Q "%DESTDIR%" | |
if not exist "%DESTDIR%" md "%DESTDIR%" | |
cd %MMSYS_HOME% | |
%JAVA_HOME%\bin\java -Djava.awt.headless=true -cp %CLASSPATH% -Djpf.boot.config=%MMSYS_HOME%\etc\subset.boot.properties -Dlog4j.configuration=%MMSYS_HOME%\etc\log4j.properties -Dinput.uri=%METADIR% -Doutput.uri=%DESTDIR% -Dmmsys.config.uri=%CONFIG_FILE% -Xms300M -Xmx%MEMMAX% org.java.plugin.boot.Boot | |
cd %INFERNODIR% |
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