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| Last login: Thu Sep 14 09:24:05 on ttys007 | |
| ➜ ~ brew cask install virtualbox | |
| brew cask install vagrant | |
| brew cask install vagrant-manager | |
| ==> Satisfying dependencies | |
| ==> Downloading http://download.virtualbox.org/virtualbox/5.1.26/VirtualBox-5.1.26-117224-OSX.dmg | |
| ######################################################################## 100.0% | |
| ==> Verifying checksum for Cask virtualbox | |
| ==> Installing Cask virtualbox | |
| ==> Running installer for virtualbox; your password may be necessary. | |
| ==> Package installers may write to any location; options such as --appdir are ignored. | |
| Password: | |
| Password:==> Sorry, try again. | |
| ==> installer: Package name is Oracle VM VirtualBox | |
| ==> installer: Installing at base path / | |
| ==> installer: The install was successful. | |
| 🍺 virtualbox was successfully installed! | |
| ==> Satisfying dependencies | |
| ==> Downloading https://releases.hashicorp.com/vagrant/1.9.8/vagrant_1.9.8_x86_64.dmg | |
| ######################################################################## 100.0% | |
| ==> Verifying checksum for Cask vagrant | |
| ==> Installing Cask vagrant | |
| ==> Running installer for vagrant; your password may be necessary. | |
| ==> Package installers may write to any location; options such as --appdir are ignored. | |
| ==> installer: Package name is Vagrant | |
| ==> installer: Installing at base path / | |
| ==> installer: The install was successful. | |
| 🍺 vagrant was successfully installed! | |
| ==> Satisfying dependencies | |
| ==> Downloading https://github.com/lanayotech/vagrant-manager/releases/download/2.5.4/vagrant-manager-2.5.4.dmg | |
| ######################################################################## 100.0% | |
| ==> Verifying checksum for Cask vagrant-manager | |
| ==> Installing Cask vagrant-manager | |
| ==> Moving App 'Vagrant Manager.app' to '/Applications/Vagrant Manager.app'. | |
| 🍺 vagrant-manager was successfully installed! | |
| ➜ ~ mkdir singularity-vm | |
| cd singularity-vm | |
| vagrant init singularityware/singularity-2.3.1 | |
| vagrant up | |
| vagrant ssh | |
| A `Vagrantfile` has been placed in this directory. You are now | |
| ready to `vagrant up` your first virtual environment! Please read | |
| the comments in the Vagrantfile as well as documentation on | |
| `vagrantup.com` for more information on using Vagrant. | |
| Bringing machine 'default' up with 'virtualbox' provider... | |
| ==> default: Box 'singularityware/singularity-2.3.1' could not be found. Attempting to find and install... | |
| default: Box Provider: virtualbox | |
| default: Box Version: >= 0 | |
| ==> default: Loading metadata for box 'singularityware/singularity-2.3.1' | |
| default: URL: https://vagrantcloud.com/singularityware/singularity-2.3.1 | |
| ==> default: Adding box 'singularityware/singularity-2.3.1' (v2.3.1) for provider: virtualbox | |
| default: Downloading: https://vagrantcloud.com/singularityware/boxes/singularity-2.3.1/versions/2.3.1/providers/virtualbox.box | |
| ==> default: Successfully added box 'singularityware/singularity-2.3.1' (v2.3.1) for 'virtualbox'! | |
| ==> default: Importing base box 'singularityware/singularity-2.3.1'... | |
| ==> default: Matching MAC address for NAT networking... | |
| ==> default: Checking if box 'singularityware/singularity-2.3.1' is up to date... | |
| ==> default: Setting the name of the VM: singularity-vm_default_1505758326395_9428 | |
| ==> default: Clearing any previously set network interfaces... | |
| ==> default: Preparing network interfaces based on configuration... | |
| default: Adapter 1: nat | |
| ==> default: Forwarding ports... | |
| default: 22 (guest) => 2222 (host) (adapter 1) | |
| ==> default: Booting VM... | |
| ==> default: Waiting for machine to boot. This may take a few minutes... | |
| default: SSH address: 127.0.0.1:2222 | |
| default: SSH username: vagrant | |
| default: SSH auth method: private key | |
| default: | |
| default: Vagrant insecure key detected. Vagrant will automatically replace | |
| default: this with a newly generated keypair for better security. | |
| default: | |
| default: Inserting generated public key within guest... | |
| default: Removing insecure key from the guest if it's present... | |
| default: Key inserted! Disconnecting and reconnecting using new SSH key... | |
| ==> default: Machine booted and ready! | |
| ==> default: Checking for guest additions in VM... | |
| ==> default: Mounting shared folders... | |
| default: /vagrant => /Users/olgabot/singularity-vm | |
| Welcome to Ubuntu 16.04.2 LTS (GNU/Linux 4.4.0-75-generic x86_64) | |
| * Documentation: https://help.ubuntu.com | |
| * Management: https://landscape.canonical.com | |
| * Support: https://ubuntu.com/advantage | |
| 64 packages can be updated. | |
| 21 updates are security updates. | |
| Last login: Tue Jun 27 11:21:33 2017 from 10.0.2.2 | |
| vagrant@vagrant:~$ exit | |
| logout | |
| Connection to 127.0.0.1 closed. | |
| ➜ singularity-vm mkdir singlecell-batches | |
| ➜ singularity-vm cd ~/code/singlecell-batches | |
| ➜ singlecell-batches mkdir singularity | |
| ➜ singlecell-batches cd singularity | |
| ➜ singularity wget https://storage.googleapis.com/singlecell-batches/scbatch_2017-09-18T14%3A00%3A06%2B00%3A00_LOCAL.img | |
| --2017-09-18 11:14:08-- https://storage.googleapis.com/singlecell-batches/scbatch_2017-09-18T14%3A00%3A06%2B00%3A00_LOCAL.img | |
| Resolving storage.googleapis.com... 172.217.5.112, 2607:f8b0:4005:808::2010 | |
| Connecting to storage.googleapis.com|172.217.5.112|:443... connected. | |
| HTTP request sent, awaiting response... 200 OK | |
| Length: 8388608032 (7.8G) [application/x-raw-disk-image] | |
| Saving to: ‘scbatch_2017-09-18T14:00:06+00:00_LOCAL.img’ | |
| scbatch_2017-09-18T14:00:06+00:00_LOCAL.img 100%[=====================================================================================================================================>] 7.81G 14.2MB/s in 10m 0s | |
| 2017-09-18 11:24:09 (13.3 MB/s) - ‘scbatch_2017-09-18T14:00:06+00:00_LOCAL.img’ saved [8388608032/8388608032] | |
| ➜ singularity chmod +x +x scbatch_2017-09-18T14%3A00%3A06%2B00%3A00_LOCAL.img | |
| chmod: +x: No such file or directory | |
| chmod: scbatch_2017-09-18T14%3A00%3A06%2B00%3A00_LOCAL.img: No such file or directory | |
| ➜ singularity chmod +x scbatch_2017-09-18T14%3A00%3A06%2B00%3A00_LOCAL.img | |
| chmod: scbatch_2017-09-18T14%3A00%3A06%2B00%3A00_LOCAL.img: No such file or directory | |
| ➜ singularity ll | |
| total 16384008 | |
| -rw-r--r--@ 1 olgabot staff 7.8G Sep 18 09:18 scbatch_2017-09-18T14:00:06+00:00_LOCAL.img | |
| ➜ singularity chmod +x scbatch_2017-09-18T14:00:06+00:00_LOCAL.img | |
| ➜ singularity ./scbatch_2017-09-18T14:00:06+00:00_LOCAL.img | |
| env: run-singularity: No such file or directory | |
| ➜ singularity |
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