olgabot · August 16, 2017 21:04
diff --git a/trying_to_install_dionysus.txt b/trying_to_install_dionysus.txt
 Last login: Mon Aug 14 16:42:56 on ttys007
 ~ source activate maca-dash
 (maca-dash) ➜  ~ conda install --yes phat
 Fetching package metadata ...............

 PackageNotFoundError: Package missing in current osx-64 channels: 
  - phat

 Close matches found; did you mean one of these?

    phat: tophat, cpat

 (maca-dash) ➜  ~ pip install phat
 Collecting phat
  Downloading phat-1.5.0a.tar.gz (4.7MB)
    100% |████████████████████████████████| 4.7MB 157kB/s 
 Collecting pybind11 (from phat)
  Downloading pybind11-2.1.1-py2.py3-none-any.whl (109kB)
    100% |████████████████████████████████| 112kB 5.2MB/s 
 Building wheels for collected packages: phat
  Running setup.py bdist_wheel for phat ... error
  Complete output from command /Users/olgabot/anaconda3/envs/maca-dash/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/70/9pmmxs613fg12b1kl7gkgfjm0000gn/T/pip-build-00g7n3l4/phat/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /var/folders/70/9pmmxs613fg12b1kl7gkgfjm0000gn/T/tmppve7lrivpip-wheel- --python-tag cp36:
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.macosx-10.7-x86_64-3.6
  copying python/phat.py -> build/lib.macosx-10.7-x86_64-3.6
  running build_ext
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "/private/var/folders/70/9pmmxs613fg12b1kl7gkgfjm0000gn/T/pip-build-00g7n3l4/phat/setup.py", line 66, in <module>
      py_modules = ['phat'],
    File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/distutils/core.py", line 148, in setup
      dist.run_commands()
    File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/distutils/dist.py", line 955, in run_commands
      self.run_command(cmd)
    File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/distutils/dist.py", line 974, in run_command
      cmd_obj.run()
    File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/site-packages/wheel/bdist_wheel.py", line 179, in run
      self.run_command('build')
    File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/distutils/cmd.py", line 313, in run_command
      self.distribution.run_command(command)
    File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/distutils/dist.py", line 974, in run_command
      cmd_obj.run()
    File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/distutils/command/build.py", line 135, in run
      self.run_command(cmd_name)
    File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/distutils/cmd.py", line 313, in run_command
      self.distribution.run_command(command)
    File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/distutils/dist.py", line 974, in run_command
      cmd_obj.run()
    File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/site-packages/setuptools-27.2.0-py3.6.egg/setuptools/command/build_ext.py", line 77, in run
    File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/distutils/command/build_ext.py", line 339, in run
      self.build_extensions()
    File "/private/var/folders/70/9pmmxs613fg12b1kl7gkgfjm0000gn/T/pip-build-00g7n3l4/phat/setup.py", line 40, in build_extensions
      import pybind11
  ModuleNotFoundError: No module named 'pybind11'
  
  ----------------------------------------
  Failed building wheel for phat
  Running setup.py clean for phat
 Failed to build phat
 Installing collected packages: pybind11, phat
  Running setup.py install for phat ... done
 Successfully installed phat-1.5.0 pybind11-2.1.1
 (maca-dash) ➜  ~ conda install dionysis
 Fetching package metadata ...............

 PackageNotFoundError: Package missing in current osx-64 channels: 
  - dionysis

 (maca-dash) ➜  ~ conda install dionysus¶
 Fetching package metadata ...............

 PackageNotFoundError: Package missing in current osx-64 channels: 
  - dionysus¶

 (maca-dash) ➜  ~ conda install dionysus 
 Fetching package metadata ...............

 PackageNotFoundError: Package missing in current osx-64 channels: 
  - dionysus

 (maca-dash) ➜  ~ pip install dionysus¶
 Invalid requirement: 'dionysus¶'
 Traceback (most recent call last):
  File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/site-packages/pip/_vendor/packaging/requirements.py", line 92, in __init__
    req = REQUIREMENT.parseString(requirement_string)
  File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/site-packages/pip/_vendor/pyparsing.py", line 1617, in parseString
    raise exc
  File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/site-packages/pip/_vendor/pyparsing.py", line 1607, in parseString
    loc, tokens = self._parse( instring, 0 )
  File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/site-packages/pip/_vendor/pyparsing.py", line 1379, in _parseNoCache
    loc,tokens = self.parseImpl( instring, preloc, doActions )
  File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/site-packages/pip/_vendor/pyparsing.py", line 3376, in parseImpl
    loc, exprtokens = e._parse( instring, loc, doActions )
  File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/site-packages/pip/_vendor/pyparsing.py", line 1383, in _parseNoCache
    loc,tokens = self.parseImpl( instring, preloc, doActions )
  File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/site-packages/pip/_vendor/pyparsing.py", line 3164, in parseImpl
    raise ParseException(instring, loc, self.errmsg, self)
 pip._vendor.pyparsing.ParseException: Expected stringEnd (at char 8), (line:1, col:9)

 During handling of the above exception, another exception occurred:

 Traceback (most recent call last):
  File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/site-packages/pip/req/req_install.py", line 82, in __init__
    req = Requirement(req)
  File "/Users/olgabot/anaconda3/envs/maca-dash/lib/python3.6/site-packages/pip/_vendor/packaging/requirements.py", line 96, in __init__
    requirement_string[e.loc:e.loc + 8]))
 pip._vendor.packaging.requirements.InvalidRequirement: Invalid requirement, parse error at "'¶'"

 (maca-dash) ➜  ~ pip install dionysus 
 Collecting dionysus
  Could not find a version that satisfies the requirement dionysus (from versions: )
 No matching distribution found for dionysus
 (maca-dash) ➜  ~ cd code 
 (maca-dash) ➜  code hg clone http://hg.mrzv.org/Dionysus/
 zsh: correct 'hg' to 'ht' [nyae]? n
 zsh: command not found: hg
 (maca-dash) ➜  code brew install hg
 Updating Homebrew...
 ==> Auto-updated Homebrew!
 Updated 2 taps (caskroom/cask, homebrew/core).
 ==> Updated Formulae
 ace             dub             gwyddion        libosinfo       osmium-tool     rocksdb         vim
 advancecomp     duplicity       hana            libosmium       osquery         sdcv            zimg
 aws-sdk-cpp     ejabberd        heroku          libwbxml        overmind        shairport-sync
 awscli          fig2dev         hivemind        linkerd         paket           termius
 babl            flow            [email protected]    llnode          pango           terraform
 commandbox      fluent-bit      jenkins         meson           pcre2           terraform-docs
 convox          gegl            kotlin          netpbm          pgrouting       terragrunt
 dmd             gifsicle        libftdi         node            pyinvoke        thefuck

 ==> Installing dependencies for mercurial: sqlite, gdbm, python
 ==> Installing mercurial dependency: sqlite
 ==> Downloading https://homebrew.bintray.com/bottles/sqlite-3.20.0.sierra.bottle.tar.gz
 ######################################################################## 100.0%
 ==> Pouring sqlite-3.20.0.sierra.bottle.tar.gz
 ==> Caveats
 This formula is keg-only, which means it was not symlinked into /usr/local,
 because macOS provides an older sqlite3.

 If you need to have this software first in your PATH run:
  echo 'export PATH="/usr/local/opt/sqlite/bin:$PATH"' >> ~/.zshrc

 For compilers to find this software you may need to set:
    LDFLAGS:  -L/usr/local/opt/sqlite/lib
    CPPFLAGS: -I/usr/local/opt/sqlite/include

 ==> Summary
 🍺  /usr/local/Cellar/sqlite/3.20.0: 11 files, 3.0MB
 ==> Installing mercurial dependency: gdbm
 ==> Downloading https://homebrew.bintray.com/bottles/gdbm-1.13.sierra.bottle.tar.gz
 ######################################################################## 100.0%
 ==> Pouring gdbm-1.13.sierra.bottle.tar.gz
 🍺  /usr/local/Cellar/gdbm/1.13: 19 files, 554.4KB
 ==> Installing mercurial dependency: python
 ==> Downloading https://homebrew.bintray.com/bottles/python-2.7.13_1.sierra.bottle.tar.gz
 ######################################################################## 100.0%
 ==> Pouring python-2.7.13_1.sierra.bottle.tar.gz
 ==> /usr/local/Cellar/python/2.7.13_1/bin/python2 -s setup.py --no-user-cfg install --force --verbose --single-vers
 ==> /usr/local/Cellar/python/2.7.13_1/bin/python2 -s setup.py --no-user-cfg install --force --verbose --single-vers
 ==> /usr/local/Cellar/python/2.7.13_1/bin/python2 -s setup.py --no-user-cfg install --force --verbose --single-vers
 ==> Caveats
 This formula installs a python2 executable to /usr/local/bin.
 If you wish to have this formula's python executable in your PATH then add
 the following to ~/.zshrc:
  export PATH="/usr/local/opt/python/libexec/bin:$PATH"

 Pip and setuptools have been installed. To update them
  pip2 install --upgrade pip setuptools

 You can install Python packages with
  pip2 install <package>

 They will install into the site-package directory
  /usr/local/lib/python2.7/site-packages

 See: https://docs.brew.sh/Homebrew-and-Python.html
 ==> Summary
 🍺  /usr/local/Cellar/python/2.7.13_1: 3,528 files, 48MB
 ==> Installing mercurial
 ==> Downloading https://homebrew.bintray.com/bottles/mercurial-4.3.1.sierra.bottle.tar.gz
 ######################################################################## 100.0%
 ==> Pouring mercurial-4.3.1.sierra.bottle.tar.gz
 ==> Caveats
 Bash completion has been installed to:
  /usr/local/etc/bash_completion.d

 zsh completions have been installed to:
  /usr/local/share/zsh/site-functions

 Python modules have been installed and Homebrew's site-packages is not
 in your Python sys.path, so you will not be able to import the modules
 this formula installed. If you plan to develop with these modules,
 please run:
  mkdir -p /Users/olgabot/.local/lib/python3.6/site-packages
  echo 'import site; site.addsitedir("/usr/local/lib/python2.7/site-packages")' >> /Users/olgabot/.local/lib/python3.6/site-packages/homebrew.pth
 ==> Summary
 🍺  /usr/local/Cellar/mercurial/4.3.1: 483 files, 7MB
 (maca-dash) ➜  code hg clone http://hg.mrzv.org/Dionysus/
 destination directory: Dionysus
 requesting all changes
 adding changesets
 adding manifests
 adding file changes
 added 287 changesets with 1408 changes to 391 files
 updating to branch default
 298 files updated, 0 files merged, 0 files removed, 0 files unresolved
 (maca-dash) ➜  code cd Dionysus 
 (maca-dash) ➜  Dionysus ll
 total 152
 -rw-r--r--   1 olgabot  staff   3.9K Aug 16 13:43 CMakeLists.txt
 -rw-r--r--   1 olgabot  staff    47K Aug 16 13:43 Doxyfile
 -rw-r--r--   1 olgabot  staff   742B Aug 16 13:43 LEGAL
 -rw-r--r--   1 olgabot  staff    15K Aug 16 13:43 LICENSE
 -rw-r--r--   1 olgabot  staff   1.6K Aug 16 13:43 README
 drwxr-xr-x   4 olgabot  staff   136B Aug 16 13:43 bindings
 drwxr-xr-x  12 olgabot  staff   408B Aug 16 13:43 doc
 drwxr-xr-x  16 olgabot  staff   544B Aug 16 13:43 examples
 drwxr-xr-x   6 olgabot  staff   204B Aug 16 13:43 include
 drwxr-xr-x   5 olgabot  staff   170B Aug 16 13:43 tests
 drwxr-xr-x   8 olgabot  staff   272B Aug 16 13:43 tools
 (maca-dash) ➜  Dionysus ll mkdir build
 cd build
 cmake ..
 make
 zsh: correct 'cmake' to 'make' [nyae]? n
 ls: build: No such file or directory
 ls: mkdir: No such file or directory
 cd: no such file or directory: build
 zsh: command not found: cmake
 make: *** No targets specified and no makefile found.  Stop.
 (maca-dash) ➜  Dionysus mkdir build
 (maca-dash) ➜  Dionysus cd build
 (maca-dash) ➜  build cmake ..
 zsh: correct 'cmake' to 'make' [nyae]? n
 zsh: command not found: cmake
 (maca-dash) ➜  build brew install cmake
 ==> Downloading https://homebrew.bintray.com/bottles/cmake-3.9.1.sierra.bottle.tar.gz
 ######################################################################## 100.0%
 ==> Pouring cmake-3.9.1.sierra.bottle.tar.gz
 ==> Caveats
 Emacs Lisp files have been installed to:
  /usr/local/share/emacs/site-lisp/cmake
 ==> Summary
 🍺  /usr/local/Cellar/cmake/3.9.1: 2,267 files, 29.6MB
 (maca-dash) ➜  build cmake ..
 -- The C compiler identification is AppleClang 8.1.0.8020042
 -- The CXX compiler identification is AppleClang 8.1.0.8020042
 -- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc
 -- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc -- works
 -- Detecting C compiler ABI info
 -- Detecting C compiler ABI info - done
 -- Detecting C compile features
 -- Detecting C compile features - done
 -- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/c++
 -- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/c++ -- works
 -- Detecting CXX compiler ABI info
 -- Detecting CXX compiler ABI info - done
 -- Detecting CXX compile features
 -- Detecting CXX compile features - done
 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1879 (message):
  Unable to find the requested Boost libraries.

  Unable to find the Boost header files.  Please set BOOST_ROOT to the root
  directory containing Boost or BOOST_INCLUDEDIR to the directory containing
  Boost's headers.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
 -- CGAL not found, therefore alphashapes will not be built.
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Found PythonLibs: /usr/lib/libpython2.7.dylib (found version "2.7.10") 
 -- CGAL not found, alphashape bindings will not be built
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 CMake Error: The following variables are used in this project, but they are set to NOTFOUND.
 Please set them or make sure they are set and tested correctly in the CMake files:
 Boost_INCLUDE_DIR (ADVANCED)
   used as include directory in directory /Users/olgabot/code/Dionysus
   used as include directory in directory /Users/olgabot/code/Dionysus
   used as include directory in directory /Users/olgabot/code/Dionysus/examples
   used as include directory in directory /Users/olgabot/code/Dionysus/examples
   used as include directory in directory /Users/olgabot/code/Dionysus/examples
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/alphashapes
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/alphashapes
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/alphashapes
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cech-complex
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cech-complex
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cech-complex
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/consistency
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/consistency
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/consistency
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/fitness
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/fitness
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/fitness
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/fitness
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/pl-functions
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/pl-functions
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/pl-functions
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/pl-functions
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/pl-functions
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/pl-functions
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/triangle
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/triangle
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/triangle
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/triangle
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/poincare
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/poincare
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/poincare
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/filtration
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/filtration
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/filtration
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/tests
   used as include directory in directory /Users/olgabot/code/Dionysus/tests
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/geometry
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/geometry
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/geometry
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/geometry
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/geometry
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/utilities
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/utilities
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/utilities
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/utilities
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/utilities
   used as include directory in directory /Users/olgabot/code/Dionysus/tools
   used as include directory in directory /Users/olgabot/code/Dionysus/tools
   used as include directory in directory /Users/olgabot/code/Dionysus/tools
   used as include directory in directory /Users/olgabot/code/Dionysus/tools/matching
   used as include directory in directory /Users/olgabot/code/Dionysus/tools/matching
   used as include directory in directory /Users/olgabot/code/Dionysus/tools/matching
   used as include directory in directory /Users/olgabot/code/Dionysus/tools/matching
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings/python
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings/python
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings/python
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings/python
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings/python

 -- Configuring incomplete, errors occurred!
 See also "/Users/olgabot/code/Dionysus/build/CMakeFiles/CMakeOutput.log".
 (maca-dash) ➜  build cd ..
 (maca-dash) ➜  Dionysus ls
 CMakeLists.txt LEGAL          README         build          examples       tests
 Doxyfile       LICENSE        bindings       doc            include        tools
 (maca-dash) ➜  Dionysus ll
 total 152
 -rw-r--r--   1 olgabot  staff   3.9K Aug 16 13:43 CMakeLists.txt
 -rw-r--r--   1 olgabot  staff    47K Aug 16 13:43 Doxyfile
 -rw-r--r--   1 olgabot  staff   742B Aug 16 13:43 LEGAL
 -rw-r--r--   1 olgabot  staff    15K Aug 16 13:43 LICENSE
 -rw-r--r--   1 olgabot  staff   1.6K Aug 16 13:43 README
 drwxr-xr-x   4 olgabot  staff   136B Aug 16 13:43 bindings
 drwxr-xr-x   8 olgabot  staff   272B Aug 16 13:45 build
 drwxr-xr-x  12 olgabot  staff   408B Aug 16 13:43 doc
 drwxr-xr-x  16 olgabot  staff   544B Aug 16 13:43 examples
 drwxr-xr-x   6 olgabot  staff   204B Aug 16 13:43 include
 drwxr-xr-x   5 olgabot  staff   170B Aug 16 13:43 tests
 drwxr-xr-x   8 olgabot  staff   272B Aug 16 13:43 tools
 (maca-dash) ➜  Dionysus conda install --yes cgal cvxopt pyqt4 pyopengl pyx
 Fetching package metadata ...............

 PackageNotFoundError: Package missing in current osx-64 channels: 
  - pyqt4

 Close matches found; did you mean one of these?

    pyqt4: pyqt

 (maca-dash) ➜  Dionysus conda install --yes cgal cvxopt pyqt pyopengl pyx 
 Fetching package metadata ...............
 Solving package specifications: .

 UnsatisfiableError: The following specifications were found to be in conflict:
  - python 3.6*
  - pyx -> python 2.7*
 Use "conda info <package>" to see the dependencies for each package.

 (maca-dash) ➜  Dionysus conda install --yes cgal cvxopt pyqt pyopengl    
 Fetching package metadata ...............
 Solving package specifications: .

 Package plan for installation in environment /Users/olgabot/anaconda3/envs/maca-dash:

 The following NEW packages will be INSTALLED:

    boost-cpp: 1.64.0-1            conda-forge
    bzip2:     1.0.6-3                        
    cgal:      4.10-py36_1         conda-forge
    cvxopt:    1.1.8-py36_4                   
    gmp:       6.1.0-0                        
    jpeg:      9b-0                           
    mpfr:      3.1.5-0                        
    pyopengl:  3.1.1a1-np113py36_0            

 The following packages will be UPDATED:

    icu:       54.1-0                          --> 58.1-1           conda-forge
    libpng:    1.6.27-0                        --> 1.6.28-1         conda-forge
    qt:        5.6.2-2                         --> 5.6.2-h9e3eb04_4 conda-forge

 gmp-6.1.0-0.ta 100% |###################################################################| Time: 0:00:00   5.33 MB/s
 icu-58.1-1.tar 100% |###################################################################| Time: 0:00:03   7.10 MB/s
 boost-cpp-1.64 100% |###################################################################| Time: 0:00:01   8.52 MB/s
 libpng-1.6.28- 100% |###################################################################| Time: 0:00:00  20.09 MB/s
 mpfr-3.1.5-0.t 100% |###################################################################| Time: 0:00:00  12.46 MB/s
 cgal-4.10-py36 100% |###################################################################| Time: 0:00:01   9.11 MB/s
 cvxopt-1.1.8-p 100% |###################################################################| Time: 0:00:00   1.33 MB/s
 qt-5.6.2-h9e3e 100% |###################################################################| Time: 0:00:07   8.83 MB/s
 pyopengl-3.1.1 100% |###################################################################| Time: 0:00:00  14.26 MB/s
 (maca-dash) ➜  Dionysus cd build
 (maca-dash) ➜  build  CXX=g++-4.2 cmake ..
 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1879 (message):
  Unable to find the requested Boost libraries.

  Unable to find the Boost header files.  Please set BOOST_ROOT to the root
  directory containing Boost or BOOST_INCLUDEDIR to the directory containing
  Boost's headers.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 CMake Error: The following variables are used in this project, but they are set to NOTFOUND.
 Please set them or make sure they are set and tested correctly in the CMake files:
 Boost_INCLUDE_DIR (ADVANCED)
   used as include directory in directory /Users/olgabot/code/Dionysus
   used as include directory in directory /Users/olgabot/code/Dionysus
   used as include directory in directory /Users/olgabot/code/Dionysus/examples
   used as include directory in directory /Users/olgabot/code/Dionysus/examples
   used as include directory in directory /Users/olgabot/code/Dionysus/examples
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/alphashapes
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/alphashapes
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/alphashapes
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/alphashapes
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/alphashapes
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/alphashapes
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cech-complex
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cech-complex
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cech-complex
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/consistency
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/consistency
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/consistency
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/cohomology
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/fitness
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/fitness
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/fitness
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/fitness
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/pl-functions
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/pl-functions
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/pl-functions
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/pl-functions
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/pl-functions
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/pl-functions
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/triangle
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/triangle
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/triangle
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/triangle
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/poincare
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/poincare
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/poincare
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/rips
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/filtration
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/filtration
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/filtration
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/examples/homology-zigzags
   used as include directory in directory /Users/olgabot/code/Dionysus/tests
   used as include directory in directory /Users/olgabot/code/Dionysus/tests
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/geometry
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/geometry
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/geometry
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/geometry
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/geometry
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/utilities
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/utilities
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/utilities
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/utilities
   used as include directory in directory /Users/olgabot/code/Dionysus/tests/utilities
   used as include directory in directory /Users/olgabot/code/Dionysus/tools
   used as include directory in directory /Users/olgabot/code/Dionysus/tools
   used as include directory in directory /Users/olgabot/code/Dionysus/tools
   used as include directory in directory /Users/olgabot/code/Dionysus/tools/matching
   used as include directory in directory /Users/olgabot/code/Dionysus/tools/matching
   used as include directory in directory /Users/olgabot/code/Dionysus/tools/matching
   used as include directory in directory /Users/olgabot/code/Dionysus/tools/matching
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings/python
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings/python
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings/python
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings/python
   used as include directory in directory /Users/olgabot/code/Dionysus/bindings/python

 -- Configuring incomplete, errors occurred!
 See also "/Users/olgabot/code/Dionysus/build/CMakeFiles/CMakeOutput.log".
 (maca-dash) ➜  build echo $bold_color 

 (maca-dash) ➜  build brew install boost
 ==> Downloading https://homebrew.bintray.com/bottles/boost-1.64.0_1.sierra.bottle.tar.gz
 ######################################################################## 100.0%
 ==> Pouring boost-1.64.0_1.sierra.bottle.tar.gz
 🍺  /usr/local/Cellar/boost/1.64.0_1: 12,628 files, 395.7MB
 (maca-dash) ➜  build ll ~/anaconda3/envs/maca-dash/include 
 total 3232
 drwxr-xr-x  1270 olgabot  staff    42K Aug 16 13:47 CGAL
 drwxr-xr-x    11 olgabot  staff   374B Jun 29 11:58 X11
 drwxr-xr-x   248 olgabot  staff   8.2K Aug 16 13:47 boost
 -rw-r--r--     8 olgabot  staff   6.1K May 24  2016 bzlib.h
 drwxr-xr-x    22 olgabot  staff   748B Aug 16 13:47 cloog
 drwxr-xr-x    49 olgabot  staff   1.6K Jun 29 11:59 freetype2
 -rw-rw-r--     2 olgabot  staff    82K Nov 17  2016 gmp.h
 -rw-rw-r--     2 olgabot  staff   114K Nov 17  2016 gmpxx.h
 drwxr-xr-x    56 olgabot  staff   1.9K Aug 16 13:47 isl
 -rw-rw-r--     6 olgabot  staff   1.7K Jan  3  2017 jconfig.h
 -rw-rw-r--     6 olgabot  staff    14K Jan  3  2017 jerror.h
 -rw-rw-r--     6 olgabot  staff    15K Jan  3  2017 jmorecfg.h
 -rw-rw-r--     6 olgabot  staff    48K Jan  3  2017 jpeglib.h
 drwxr-xr-x     5 olgabot  staff   170B Aug 16 13:47 libpng16
 drwxr-xr-x    16 olgabot  staff   544B Jun 29 11:58 lzma
 -rw-rw-r--    22 olgabot  staff   9.5K Dec 28  2016 lzma.h
 -rw-rw-r--     2 olgabot  staff   6.1K Nov 17  2016 mpf2mpfr.h
 -rw-rw-r--     2 olgabot  staff    50K Nov 17  2016 mpfr.h
 drwxr-xr-x    77 olgabot  staff   2.6K Jun 29 11:58 openssl
 lrwxr-xr-x     1 olgabot  staff    14B Aug 16 13:47 png.h -> libpng16/png.h
 lrwxr-xr-x     1 olgabot  staff    18B Aug 16 13:47 pngconf.h -> libpng16/pngconf.h
 lrwxr-xr-x     1 olgabot  staff    21B Aug 16 13:47 pnglibconf.h -> libpng16/pnglibconf.h
 drwxr-xr-x   104 olgabot  staff   3.5K Aug 16 13:38 python3.6m
 drwxr-xr-x    43 olgabot  staff   1.4K Jun 29 11:59 qt
 drwxr-xr-x    10 olgabot  staff   340B Jun 29 11:58 readline
 -rw-r--r--    25 olgabot  staff   475K May 25  2016 sqlite3.h
 -rw-r--r--    25 olgabot  staff    29K May 25  2016 sqlite3ext.h
 -rw-r--r--    25 olgabot  staff    85K Mar 16  2015 tcl.h
 -rw-r--r--    25 olgabot  staff   222K Mar 16  2015 tclDecls.h
 -rw-r--r--    25 olgabot  staff   3.6K Mar 16  2015 tclPlatDecls.h
 -rw-r--r--    25 olgabot  staff    18K Mar 16  2015 tclTomMath.h
 -rw-r--r--    25 olgabot  staff    25K Mar 16  2015 tclTomMathDecls.h
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 drwxr-xr-x   174 olgabot  staff   5.8K Aug 16 13:47 unicode
 -rw-r--r--    25 olgabot  staff    15K May 25  2016 zconf.h
 -rw-r--r--    25 olgabot  staff    86K May 25  2016 zlib.h
 (maca-dash) ➜  build ll ~/anaconda3/envs/maca-dash/include/boost/
 accumulators/                  fusion/                        predef/                      
 algorithm/                     generator_iterator.hpp         predef.h                     
 align/                         geometry/                      preprocessor/                
 align.hpp                      geometry.hpp                   preprocessor.hpp             
 aligned_storage.hpp            get_pointer.hpp                process/                     
 any.hpp                        gil/                           process.hpp                  
 archive/                       graph/                         program_options/             
 array.hpp                      hana/                          program_options.hpp          
 asio/                          hana.hpp                       progress.hpp                 
 asio.hpp                       heap/                          property_map/                
 assert.hpp                     icl/                           property_tree/               
 assign/                        implicit_cast.hpp              proto/                       
 assign.hpp                     indirect_reference.hpp         ptr_container/               
 atomic/                        integer/                       qvm/                         
 atomic.hpp                     integer.hpp                    random/                      
 bimap/                         integer_fwd.hpp                random.hpp                   
 bimap.hpp                      integer_traits.hpp             range/                       
 bind/                          interprocess/                  range.hpp                    
 bind.hpp                       intrusive/                     ratio/                       
 blank.hpp                      intrusive_ptr.hpp              ratio.hpp                    
 blank_fwd.hpp                  io/                            rational.hpp                 
 call_traits.hpp                io_fwd.hpp                     ref.hpp                      
 cast.hpp                       iostreams/                     regex/                       
 cerrno.hpp                     is_placeholder.hpp             regex.h                      
 checked_delete.hpp             iterator/                      regex.hpp                    
 chrono/                        iterator.hpp                   regex_fwd.hpp                
 chrono.hpp                     iterator_adaptors.hpp          scope_exit.hpp               
 circular_buffer/               lambda/                        scoped_array.hpp             
 circular_buffer.hpp            last_value.hpp                 scoped_ptr.hpp               
 circular_buffer_fwd.hpp        lexical_cast/                  serialization/               
 compatibility/                 lexical_cast.hpp               shared_array.hpp             
 compressed_pair.hpp            limits.hpp                     shared_container_iterator.hpp
 compute/                       local_function/                shared_ptr.hpp               
 compute.hpp                    local_function.hpp             signal.hpp                   
 concept/                       locale/                        signals/                     
 concept_archetype.hpp          locale.hpp                     signals.hpp                  
 concept_check/                 lockfree/                      signals2/                    
 concept_check.hpp              log/                           signals2.hpp                 
 config/                        logic/                         smart_ptr/                   
 config.hpp                     make_default.hpp               smart_ptr.hpp                
 container/                     make_shared.hpp                sort/                        
 context/                       make_unique.hpp                spirit/                      
 convert/                       math/                          spirit.hpp                   
 convert.hpp                    math_fwd.hpp                   statechart/                  
 core/                          mem_fn.hpp                     static_assert.hpp            
 coroutine/                     memory_order.hpp               swap.hpp                     
 coroutine2/                    metaparse/                     system/                      
 crc.hpp                        metaparse.hpp                  test/                        
 cregex.hpp                     move/                          thread/                      
 cstdfloat.hpp                  mpi/                           thread.hpp                   
 cstdint.hpp                    mpi.hpp                        throw_exception.hpp          
 cstdlib.hpp                    mpl/                           timer/                       
 current_function.hpp           msm/                           timer.hpp                    
 cxx11_char_types.hpp           multi_array/                   token_functions.hpp          
 date_time/                     multi_array.hpp                token_iterator.hpp           
 date_time.hpp                  multi_index/                   tokenizer.hpp                
 detail/                        multi_index_container.hpp      tr1/                         
 dll/                           multi_index_container_fwd.hpp  tti/                         
 dll.hpp                        multiprecision/                tuple/                       
 dynamic_bitset/                next_prior.hpp                 type.hpp                     
 dynamic_bitset.hpp             non_type.hpp                   type_erasure/                
 dynamic_bitset_fwd.hpp         noncopyable.hpp                type_index/                  
 enable_shared_from_this.hpp    nondet_random.hpp              type_index.hpp               
 endian/                        none.hpp                       type_traits/                 
 exception/                     none_t.hpp                     type_traits.hpp              
 exception_ptr.hpp              numeric/                       typeof/                      
 fiber/                         operators.hpp                  units/                       
 filesystem/                    operators_v1.hpp               unordered/                   
 filesystem.hpp                 optional/                      unordered_map.hpp            
 flyweight/                     optional.hpp                   unordered_set.hpp            
 flyweight.hpp                  parameter/                     utility/                     
 foreach.hpp                    parameter.hpp*                 utility.hpp                  
 foreach_fwd.hpp                pending/                       uuid/                        
 format/                        phoenix/                       variant/                     
 format.hpp                     phoenix.hpp                    variant.hpp                  
 function/                      pointee.hpp                    version.hpp                  
 function.hpp                   pointer_cast.hpp               visit_each.hpp               
 function_equal.hpp             pointer_to_other.hpp           vmd/                         
 function_output_iterator.hpp   polygon/                       wave/                        
 function_types/                polymorphic_cast.hpp           wave.hpp                     
 functional/                    polymorphic_pointer_cast.hpp   weak_ptr.hpp                 
 functional.hpp                 pool/                          xpressive/                   
 (maca-dash) ➜  build BOOST_INCLUDEDIRl=l ~/anaconda3/envs/maca-dash/include/boost  CXX=g++-4.2 cmake ..
 zsh: permission denied: /Users/olgabot/anaconda3/envs/maca-dash/include/boost
 (maca-dash) ➜  build BOOST_INCLUDEDIRl=~/anaconda3/envs/maca-dash/include/boost  CXX=g++-4.2 cmake .. 
 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1879 (message):
  Unable to find the requested Boost libraries.

  Boost version: 1.64.0

  Boost include path: /usr/local/include

  Could not find the following Boost libraries:

          boost_python

  Some (but not all) of the required Boost libraries were found.  You may
  need to install these additional Boost libraries.  Alternatively, set
  BOOST_LIBRARYDIR to the directory containing Boost libraries or BOOST_ROOT
  to the location of Boost.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Configuring incomplete, errors occurred!
 See also "/Users/olgabot/code/Dionysus/build/CMakeFiles/CMakeOutput.log".
 (maca-dash) ➜  build BOOST_INCLUDEDIRl=~/anaconda3/envs/maca-dash/include  CXX=g++-4.2 cmake .. 
 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1879 (message):
  Unable to find the requested Boost libraries.

  Boost version: 1.64.0

  Boost include path: /usr/local/include

  Could not find the following Boost libraries:

          boost_python

  Some (but not all) of the required Boost libraries were found.  You may
  need to install these additional Boost libraries.  Alternatively, set
  BOOST_LIBRARYDIR to the directory containing Boost libraries or BOOST_ROOT
  to the location of Boost.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Configuring incomplete, errors occurred!
 See also "/Users/olgabot/code/Dionysus/build/CMakeFiles/CMakeOutput.log".
 (maca-dash) ➜  build conda install boost-python
 Fetching package metadata ...............

 PackageNotFoundError: Package missing in current osx-64 channels: 
  - boost-python

 Close matches found; did you mean one of these?

    boost-python: bx-python, biopython

 (maca-dash) ➜  build conda install boost
 Fetching package metadata ...............
 Solving package specifications: .

 Package plan for installation in environment /Users/olgabot/anaconda3/envs/maca-dash:

 The following NEW packages will be INSTALLED:

    boost: 1.57.0-4

 Proceed ([y]/n)? y

 boost-1.57.0-4 100% |###################################################################| Time: 0:00:01   6.31 MB/s
 brew uninstall boost
 (maca-dash) ➜  build brew uninstall boost
 Uninstalling /usr/local/Cellar/boost/1.64.0_1... (12,628 files, 395.7MB)
 (maca-dash) ➜  build BOOST_INCLUDEDIRl=~/anaconda3/envs/maca-dash/include  CXX=g++-4.2 cmake ..
 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1231 (file):
  file STRINGS file "/usr/local/include/boost/version.hpp" cannot be read.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1879 (message):
  Unable to find the requested Boost libraries.

  Boost version: 0.0.0

  Boost include path: /usr/local/include

  Could not find the following Boost libraries:

          boost_program_options
          boost_python
          boost_serialization
          boost_signals

  No Boost libraries were found.  You may need to set BOOST_LIBRARYDIR to the
  directory containing Boost libraries or BOOST_ROOT to the location of
  Boost.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Configuring incomplete, errors occurred!
 See also "/Users/olgabot/code/Dionysus/build/CMakeFiles/CMakeOutput.log".
 (maca-dash) ➜  build CXX=g++-4.2 cmake ..              
 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1231 (file):
  file STRINGS file "/usr/local/include/boost/version.hpp" cannot be read.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1879 (message):
  Unable to find the requested Boost libraries.

  Boost version: 0.0.0

  Boost include path: /usr/local/include

  Could not find the following Boost libraries:

          boost_program_options
          boost_python
          boost_serialization
          boost_signals

  No Boost libraries were found.  You may need to set BOOST_LIBRARYDIR to the
  directory containing Boost libraries or BOOST_ROOT to the location of
  Boost.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Configuring incomplete, errors occurred!
 See also "/Users/olgabot/code/Dionysus/build/CMakeFiles/CMakeOutput.log".
 (maca-dash) ➜  build BOOST_INCLUDEDIRl=~/anaconda3/envs/maca-dash/include  CXX=g++-4.2 cmake ..
 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1231 (file):
  file STRINGS file "/usr/local/include/boost/version.hpp" cannot be read.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1879 (message):
  Unable to find the requested Boost libraries.

  Boost version: 0.0.0

  Boost include path: /usr/local/include

  Could not find the following Boost libraries:

          boost_program_options
          boost_python
          boost_serialization
          boost_signals

  No Boost libraries were found.  You may need to set BOOST_LIBRARYDIR to the
  directory containing Boost libraries or BOOST_ROOT to the location of
  Boost.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Configuring incomplete, errors occurred!
 See also "/Users/olgabot/code/Dionysus/build/CMakeFiles/CMakeOutput.log".
 (maca-dash) ➜  build BOOST_INCLUDEDIR=~/anaconda3/envs/maca-dash/include  CXX=g++-4.2 cmake .. 
 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1231 (file):
  file STRINGS file "/usr/local/include/boost/version.hpp" cannot be read.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1879 (message):
  Unable to find the requested Boost libraries.

  Boost version: 0.0.0

  Boost include path: /usr/local/include

  Could not find the following Boost libraries:

          boost_program_options
          boost_python
          boost_serialization
          boost_signals

  No Boost libraries were found.  You may need to set BOOST_LIBRARYDIR to the
  directory containing Boost libraries or BOOST_ROOT to the location of
  Boost.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Configuring incomplete, errors occurred!
 See also "/Users/olgabot/code/Dionysus/build/CMakeFiles/CMakeOutput.log".
 (maca-dash) ➜  build BOOST_INCLUDEDIR=$HOME/anaconda3/envs/maca-dash/include  CXX=g++-4.2 cmake ..
 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1231 (file):
  file STRINGS file "/usr/local/include/boost/version.hpp" cannot be read.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1879 (message):
  Unable to find the requested Boost libraries.

  Boost version: 0.0.0

  Boost include path: /usr/local/include

  Could not find the following Boost libraries:

          boost_program_options
          boost_python
          boost_serialization
          boost_signals

  No Boost libraries were found.  You may need to set BOOST_LIBRARYDIR to the
  directory containing Boost libraries or BOOST_ROOT to the location of
  Boost.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Configuring incomplete, errors occurred!
 See also "/Users/olgabot/code/Dionysus/build/CMakeFiles/CMakeOutput.log".
 (maca-dash) ➜  build BOOST_ROOT=$HOME/anaconda3/envs/maca-dash/include/boost  CXX=g++-4.2 cmake ..      
 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1231 (file):
  file STRINGS file "/usr/local/include/boost/version.hpp" cannot be read.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Warning at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:771 (message):
  Imported targets not available for Boost version 0
 Call Stack (most recent call first):
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES)
  /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1503 (_Boost_MISSING_DEPENDENCIES)
  CMakeLists.txt:13 (find_package)


 CMake Error at /usr/local/Cellar/cmake/3.9.1/share/cmake/Modules/FindBoost.cmake:1879 (message):
  Unable to find the requested Boost libraries.

  Boost version: 0.0.0

  Boost include path: /usr/local/include

  Could not find the following Boost libraries:

          boost_program_options
          boost_python
          boost_serialization
          boost_signals

  No Boost libraries were found.  You may need to set BOOST_LIBRARYDIR to the
  directory containing Boost libraries or BOOST_ROOT to the location of
  Boost.
 Call Stack (most recent call first):
  CMakeLists.txt:13 (find_package)


 -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Configuring incomplete, errors occurred!
 See also "/Users/olgabot/code/Dionysus/build/CMakeFiles/CMakeOutput.log".
 (maca-dash) ➜  build brew install boost boost-python
 Updating Homebrew...
 ==> Auto-updated Homebrew!
 Updated 1 tap (homebrew/core).
 ==> Updated Formulae
 dvm                                                       kubernetes-helm

 ==> Downloading https://homebrew.bintray.com/bottles/boost-1.64.0_1.sierra.bottle.tar.gz
 Already downloaded: /Users/olgabot/Library/Caches/Homebrew/boost-1.64.0_1.sierra.bottle.tar.gz
 ==> Pouring boost-1.64.0_1.sierra.bottle.tar.gz
 🍺  /usr/local/Cellar/boost/1.64.0_1: 12,628 files, 395.7MB
 ==> Downloading https://homebrew.bintray.com/bottles/boost-python-1.64.0.sierra.bottle.tar.gz
 ######################################################################## 100.0%
 ==> Pouring boost-python-1.64.0.sierra.bottle.tar.gz
 🍺  /usr/local/Cellar/boost-python/1.64.0: 458 files, 16.7MB
 (maca-dash) ➜  build which boost
 boost not found
 (maca-dash) ➜  build env      
 TMPDIR=/var/folders/70/9pmmxs613fg12b1kl7gkgfjm0000gn/T/
 SECURITYSESSIONID=18721
 Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.jtAqpL96b4/Render
 TERM_PROGRAM_VERSION=388.1
 LANG=en_US.UTF-8
 TERM_PROGRAM=Apple_Terminal
 XPC_SERVICE_NAME=0
 XPC_FLAGS=0x0
 TERM_SESSION_ID=542B4AAC-0728-4BCA-B40E-830B2F875443
 SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.CVcVxFwlRG/Listeners
 TERM=xterm-256color
 __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0
 SHELL=/bin/zsh
 HOME=/Users/olgabot
 LOGNAME=olgabot
 USER=olgabot
 PATH=/Users/olgabot/anaconda3/envs/maca-dash/bin:/Users/olgabot/anaconda3/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin
 SHLVL=1
 PWD=/Users/olgabot/code/Dionysus/build
 OLDPWD=/Users/olgabot/code/Dionysus
 ZSH=/Users/olgabot/.oh-my-zsh
 PAGER=less
 LESS=-R
 LC_CTYPE=en_US.UTF-8
 LSCOLORS=Gxfxcxdxbxegedabagacad
 EDITOR=emacs
 SSH_KEY_PATH=~/.ssh/rsa_id
 PS1=(maca-dash) ${ret_status} %{$fg[cyan]%}%c%{$reset_color%} $(git_prompt_info)
 CONDA_PATH_BACKUP=/Users/olgabot/anaconda3/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin
 CONDA_PS1_BACKUP=${ret_status} %{$fg[cyan]%}%c%{$reset_color%} $(git_prompt_info)
 CONDA_DEFAULT_ENV=maca-dash
 CONDA_PREFIX=/Users/olgabot/anaconda3/envs/maca-dash
 _=/usr/bin/env
 (maca-dash) ➜  build BOOST_ROOT=/usr/local/Cellar/boost/1.64.0_1 CXX=g++-4.2 cmake ..
 -- Boost version: 1.64.0
 -- Found the following Boost libraries:
 --   program_options
 --   python
 --   serialization
 --   signals
 -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Configuring done
 CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   _dionysus

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Generating done
 -- Build files have been written to: /Users/olgabot/code/Dionysus/build
 (maca-dash) ➜  build brew install doxygen
 Updating Homebrew...
 ==> Auto-updated Homebrew!
 Updated 1 tap (homebrew/core).
 ==> Updated Formulae
 cromwell                                                  saxon

 ==> Downloading https://homebrew.bintray.com/bottles/doxygen-1.8.13_1.sierra.bottle.1.tar.gz
 ######################################################################## 100.0%
 ==> Pouring doxygen-1.8.13_1.sierra.bottle.1.tar.gz
 🍺  /usr/local/Cellar/doxygen/1.8.13_1: 9 files, 13.1MB
 (maca-dash) ➜  build BOOST_ROOT=/usr/local/Cellar/boost/1.64.0_1 CXX=g++-4.2 cmake ..
 -- Boost version: 1.64.0
 -- Found the following Boost libraries:
 --   program_options
 --   python
 --   serialization
 --   signals
 -- Found Doxygen: /usr/local/bin/doxygen (found version "1.8.13") found components:  doxygen missing components:  dot
 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Configuring done
 CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   _dionysus

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Generating done
 -- Build files have been written to: /Users/olgabot/code/Dionysus/build
 (maca-dash) ➜  build ll
 total 176
 -rw-r--r--   1 olgabot  staff    19K Aug 16 13:55 CMakeCache.txt
 -rw-r--r--   1 olgabot  staff    13K Aug 16 13:55 CMakeDoxyfile.in
 -rw-r--r--   1 olgabot  staff    19K Aug 16 13:55 CMakeDoxygenDefaults.cmake
 drwxr-xr-x  15 olgabot  staff   510B Aug 16 13:55 CMakeFiles
 -rw-r--r--   1 olgabot  staff    26K Aug 16 13:55 Makefile
 drwxr-xr-x   6 olgabot  staff   204B Aug 16 13:55 bindings
 -rw-r--r--   1 olgabot  staff   1.6K Aug 16 13:55 cmake_install.cmake
 drwxr-xr-x  16 olgabot  staff   544B Aug 16 13:55 examples
 drwxr-xr-x   7 olgabot  staff   238B Aug 16 13:55 tests
 drwxr-xr-x   6 olgabot  staff   204B Aug 16 13:55 tools
 (maca-dash) ➜  build pwd
 /Users/olgabot/code/Dionysus/build
 (maca-dash) ➜  build cd ..
 (maca-dash) ➜  Dionysus cd build 
 (maca-dash) ➜  build make
 Scanning dependencies of target bottleneck-distance
 [  1%] Building CXX object examples/CMakeFiles/bottleneck-distance.dir/bottleneck-distance.o
 [  2%] Linking CXX executable bottleneck-distance
 [  2%] Built target bottleneck-distance
 Scanning dependencies of target alphashapes2d
 [  3%] Building CXX object examples/alphashapes/CMakeFiles/alphashapes2d.dir/alphashapes2d.o
 [  4%] Linking CXX executable alphashapes2d
 [  4%] Built target alphashapes2d
 Scanning dependencies of target alphashapes3d-cohomology
 [  5%] Building CXX object examples/alphashapes/CMakeFiles/alphashapes3d-cohomology.dir/alphashapes3d-cohomology.o
 [  6%] Linking CXX executable alphashapes3d-cohomology
 [  6%] Built target alphashapes3d-cohomology
 Scanning dependencies of target alphashapes3d
 [  7%] Building CXX object examples/alphashapes/CMakeFiles/alphashapes3d.dir/alphashapes3d.o
 [  8%] Linking CXX executable alphashapes3d
 [  8%] Built target alphashapes3d
 Scanning dependencies of target compare-diagrams
 [  9%] Building CXX object examples/alphashapes/CMakeFiles/compare-diagrams.dir/compare-diagrams.o
 [ 10%] Linking CXX executable compare-diagrams
 Undefined symbols for architecture x86_64:
  "boost::archive::basic_binary_iarchive<boost::archive::binary_iarchive>::load_override(boost::archive::class_name_type&, int)", referenced from:
      boost::archive::detail::common_iarchive<boost::archive::binary_iarchive>::vload(boost::archive::class_name_type&) in compare-diagrams.o
 ld: symbol(s) not found for architecture x86_64
 clang: error: linker command failed with exit code 1 (use -v to see invocation)
 make[2]: *** [examples/alphashapes/compare-diagrams] Error 1
 make[1]: *** [examples/alphashapes/CMakeFiles/compare-diagrams.dir/all] Error 2
 make: *** [all] Error 2
 (maca-dash) ➜  build BOOST_INCLUDEDIR=$HOME/anaconda3/envs/maca-dash/include BOOST_LIBRARYDIR=$HOME/anaconda3/envs/maca-dash/lib CXX=g++-4.2 cmake ..
 -- Boost version: 1.64.0
 -- Found the following Boost libraries:
 --   program_options
 --   python
 --   serialization
 --   signals
 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at examples/homology-zigzags/CMakeLists.txt:9 (add_executable):
  Policy CMP0002 is not set: Logical target names must be globally unique.
  Run "cmake --help-policy CMP0002" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Build type: Release
 -- USING CXXFLAGS = '-arch x86_64 -mmacosx-version-min=10.9 -stdlib=libc++ -m64 -O3 -DNDEBUG'
 -- USING EXEFLAGS = '-arch x86_64 -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ '
 -- Targetting Unix Makefiles
 -- Using /Library/Developer/CommandLineTools/usr/bin/c++ compiler.
 -- DARWIN_VERSION=16
 -- Mac Leopard detected
 -- Requested component: MPFR
 -- Requested component: GMP
 CMake Warning (dev) at bindings/python/CMakeLists.txt:50 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "_dionysus".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Configuring done
 CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   _dionysus

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Generating done
 -- Build files have been written to: /Users/olgabot/code/Dionysus/build
 (maca-dash) ➜  build make
 [  2%] Built target bottleneck-distance
 [  4%] Built target alphashapes2d
 [  6%] Built target alphashapes3d-cohomology
 [  8%] Built target alphashapes3d
 [  9%] Linking CXX executable compare-diagrams
 Undefined symbols for architecture x86_64:
  "boost::archive::basic_binary_iarchive<boost::archive::binary_iarchive>::load_override(boost::archive::class_name_type&, int)", referenced from:
      boost::archive::detail::common_iarchive<boost::archive::binary_iarchive>::vload(boost::archive::class_name_type&) in compare-diagrams.o
 ld: symbol(s) not found for architecture x86_64
 clang: error: linker command failed with exit code 1 (use -v to see invocation)
 make[2]: *** [examples/alphashapes/compare-diagrams] Error 1
 make[1]: *** [examples/alphashapes/CMakeFiles/compare-diagrams.dir/all] Error 2
 make: *** [all] Error 2
 (maca-dash) ➜  build make clean
 (maca-dash) ➜  build make
 [  1%] Building CXX object examples/CMakeFiles/bottleneck-distance.dir/bottleneck-distance.o
 [  2%] Linking CXX executable bottleneck-distance
 [  2%] Built target bottleneck-distance
 [  3%] Building CXX object examples/alphashapes/CMakeFiles/alphashapes2d.dir/alphashapes2d.o
 [  4%] Linking CXX executable alphashapes2d
 [  4%] Built target alphashapes2d
 [  5%] Building CXX object examples/alphashapes/CMakeFiles/alphashapes3d-cohomology.dir/alphashapes3d-cohomology.o
 [  6%] Linking CXX executable alphashapes3d-cohomology
 [  6%] Built target alphashapes3d-cohomology
 [  7%] Building CXX object examples/alphashapes/CMakeFiles/alphashapes3d.dir/alphashapes3d.o
 [  8%] Linking CXX executable alphashapes3d
 [  8%] Built target alphashapes3d
 [  9%] Building CXX object examples/alphashapes/CMakeFiles/compare-diagrams.dir/compare-diagrams.o
 [ 10%] Linking CXX executable compare-diagrams
 Undefined symbols for architecture x86_64:
  "boost::archive::basic_binary_iarchive<boost::archive::binary_iarchive>::load_override(boost::archive::class_name_type&, int)", referenced from:
      boost::archive::detail::common_iarchive<boost::archive::binary_iarchive>::vload(boost::archive::class_name_type&) in compare-diagrams.o
 ld: symbol(s) not found for architecture x86_64
 clang: error: linker command failed with exit code 1 (use -v to see invocation)
 make[2]: *** [examples/alphashapes/compare-diagrams] Error 1
 make[1]: *** [examples/alphashapes/CMakeFiles/compare-diagrams.dir/all] Error 2
 make: *** [all] Error 2
 (maca-dash) ➜  build