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June 16, 2014 23:11
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After updating conda, many errors..
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| [obotvinnik@tscc-login2 ~]$ conda -h | |
| Traceback (most recent call last): | |
| File "/projects/ps-yeolab/software/anaconda/bin/conda", line 3, in <module> | |
| from conda.cli import main | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/__init__.py", line 8, in <module> | |
| from conda.cli.main import main | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 47, in <module> | |
| from conda.cli import main_create | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 11, in <module> | |
| from conda.cli import common, install | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 17, in <module> | |
| import conda.plan as plan | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/plan.py", line 21, in <module> | |
| from conda.fetch import fetch_pkg | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/fetch.py", line 23, in <module> | |
| from conda.connection import CondaSession, unparse_url | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/connection.py", line 22, in <module> | |
| import requests | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/requests/__init__.py", line 58, in <module> | |
| from . import utils | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/requests/utils.py", line 25, in <module> | |
| from .compat import parse_http_list as _parse_list_header | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/requests/compat.py", line 7, in <module> | |
| from .packages import chardet | |
| ImportError: cannot import name chardet |
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| [obotvinnik@tscc-login2 ~]$ conda update conda | |
| Traceback (most recent call last): | |
| File "/projects/ps-yeolab/software/anaconda/bin/conda", line 3, in <module> | |
| from conda.cli import main | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/__init__.py", line 8, in <module> | |
| from conda.cli.main import main | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 47, in <module> | |
| from conda.cli import main_create | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 11, in <module> | |
| from conda.cli import common, install | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 17, in <module> | |
| import conda.plan as plan | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/plan.py", line 21, in <module> | |
| from conda.fetch import fetch_pkg | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/fetch.py", line 23, in <module> | |
| from conda.connection import CondaSession, unparse_url | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/connection.py", line 22, in <module> | |
| import requests | |
| ImportError: No module named requests | |
| [obotvinnik@tscc-login2 ~]$ which -a conda | |
| /projects/ps-yeolab/software/anaconda/bin/conda | |
| [obotvinnik@tscc-login2 ~]$ conda update requests | |
| Traceback (most recent call last): | |
| File "/projects/ps-yeolab/software/anaconda/bin/conda", line 3, in <module> | |
| from conda.cli import main | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/__init__.py", line 8, in <module> | |
| from conda.cli.main import main | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 47, in <module> | |
| from conda.cli import main_create | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 11, in <module> | |
| from conda.cli import common, install | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 17, in <module> | |
| import conda.plan as plan | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/plan.py", line 21, in <module> | |
| from conda.fetch import fetch_pkg | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/fetch.py", line 23, in <module> | |
| from conda.connection import CondaSession, unparse_url | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/connection.py", line 22, in <module> | |
| import requests | |
| ImportError: No module named requests | |
| [obotvinnik@tscc-login2 ~]$ conda install requests | |
| Traceback (most recent call last): | |
| File "/projects/ps-yeolab/software/anaconda/bin/conda", line 3, in <module> | |
| from conda.cli import main | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/__init__.py", line 8, in <module> | |
| from conda.cli.main import main | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 47, in <module> | |
| from conda.cli import main_create | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 11, in <module> | |
| from conda.cli import common, install | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 17, in <module> | |
| import conda.plan as plan | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/plan.py", line 21, in <module> | |
| from conda.fetch import fetch_pkg | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/fetch.py", line 23, in <module> | |
| from conda.connection import CondaSession, unparse_url | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/conda/connection.py", line 22, in <module> | |
| import requests | |
| ImportError: No module named requests | |
| [obotvinnik@tscc-login2 ~]$ pip install requests | |
| Requirement already satisfied (use --upgrade to upgrade): requests in /projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages | |
| Cleaning up... | |
| [obotvinnik@tscc-login2 ~]$ pip install -U requests | |
| Requirement already up-to-date: requests in /projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages | |
| Cleaning up... | |
| [obotvinnik@tscc-login2 ~]$ pip install -I requests | |
| Downloading/unpacking requests | |
| Downloading requests-2.3.0-py2.py3-none-any.whl (452kB): 452kB downloaded | |
| Installing collected packages: requests | |
| Cleaning up... | |
| Exception: | |
| Traceback (most recent call last): | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/pip/basecommand.py", line 122, in main | |
| status = self.run(options, args) | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/pip/commands/install.py", line 283, in run | |
| requirement_set.install(install_options, global_options, root=options.root_path) | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/pip/req.py", line 1435, in install | |
| requirement.install(install_options, global_options, *args, **kwargs) | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/pip/req.py", line 671, in install | |
| self.move_wheel_files(self.source_dir, root=root) | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/pip/req.py", line 901, in move_wheel_files | |
| pycompile=self.pycompile, | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/pip/wheel.py", line 215, in move_wheel_files | |
| clobber(source, lib_dir, True) | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/pip/wheel.py", line 209, in clobber | |
| shutil.copy2(srcfile, destfile) | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/shutil.py", line 131, in copy2 | |
| copystat(src, dst) | |
| File "/projects/ps-yeolab/software/anaconda/lib/python2.7/shutil.py", line 98, in copystat | |
| os.utime(dst, (st.st_atime, st.st_mtime)) | |
| OSError: [Errno 1] Operation not permitted: '/projects/ps-yeolab/software/anaconda/lib/python2.7/site-packages/requests/packages/urllib3/util/timeout.py' | |
| Storing debug log for failure in /home/obotvinnik/.pip/pip.log |
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