Created
July 28, 2016 15:56
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Errors with fastq-dump
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((py3k)) [obotvinnik@tscc-login2 fastq_dump]$ fastq-dump --gzip --split-files /oasis/tscc/scratch/obotvinnik/external_singlecell/tasic2015/1645630/SRR2140205.sra --outdir /oasis/tscc/scratch/obotvinnik/external_singlecell/tasic2015/1645630/ | |
2016-07-28T15:53:29 fastq-dump.2.5.4 err: name not found while resolving tree within virtual file system module - failed /oasis/tscc/scratch/obotvinnik/external_singlecell/tasic2015/1645630/SRR2140205.sra | |
============================================================= | |
An error occurred during processing. | |
A report was generated into the file '/home/obotvinnik/ncbi_error_report.xml'. | |
If the problem persists, you may consider sending the file | |
to '[email protected]' for assistance. | |
============================================================= | |
((py3k)) [obotvinnik@tscc-login2 fastq_dump]$ cd /oasis/tscc/scratch/obotvinnik/external_singlecell/tasic2015/1645630/ | |
((py3k)) [obotvinnik@tscc-login2 1645630]$ ls | |
SRR2140205_1.fastq.gz SRR2140205.fastq SRR2140205.sra | |
((py3k)) [obotvinnik@tscc-login2 1645630]$ ll | |
total 617M | |
-rw-r--r-- 1 obotvinnik yeo-group 232 Jul 28 08:53 SRR2140205_1.fastq.gz | |
-rw-r--r-- 1 obotvinnik yeo-group 453M Jun 24 20:41 SRR2140205.fastq | |
-rw-r--r-- 1 obotvinnik yeo-group 428M Jun 18 12:20 SRR2140205.sra | |
((py3k)) [obotvinnik@tscc-login2 1645630]$ fastq-dump --gzip --split-files SRR2140205.sra | |
2016-07-28T15:54:04 fastq-dump.2.5.4 err: name not found while resolving tree within virtual file system module - failed SRR2140205.sra | |
============================================================= | |
An error occurred during processing. | |
A report was generated into the file '/home/obotvinnik/ncbi_error_report.xml'. | |
If the problem persists, you may consider sending the file | |
to '[email protected]' for assistance. | |
============================================================= | |
((py3k)) [obotvinnik@tscc-login2 1645630]$ fastq-dump --gzip --split-files -A SRR2140205.sra | |
2016-07-28T15:54:13 fastq-dump.2.5.4 err: name not found while resolving tree within virtual file system module - failed SRR2140205.sra | |
============================================================= | |
An error occurred during processing. | |
A report was generated into the file '/home/obotvinnik/ncbi_error_report.xml'. | |
If the problem persists, you may consider sending the file | |
to '[email protected]' for assistance. | |
============================================================= | |
((py3k)) [obotvinnik@tscc-login2 1645630]$ fastq-dump --gzip --split-files -A ./SRR2140205.sra | |
2016-07-28T15:55:27 fastq-dump.2.5.4 err: name not found while resolving tree within virtual file system module - failed ./SRR2140205.sra | |
============================================================= | |
An error occurred during processing. | |
A report was generated into the file '/home/obotvinnik/ncbi_error_report.xml'. | |
If the problem persists, you may consider sending the file | |
to '[email protected]' for assistance. | |
============================================================= | |
((py3k)) [obotvinnik@tscc-login2 1645630]$ fastq-dump --gzip --split-files ./SRR2140205.sra | |
2016-07-28T15:55:31 fastq-dump.2.5.4 err: name not found while resolving tree within virtual file system module - failed ./SRR2140205.sra | |
============================================================= | |
An error occurred during processing. | |
A report was generated into the file '/home/obotvinnik/ncbi_error_report.xml'. | |
If the problem persists, you may consider sending the file | |
to '[email protected]' for assistance. | |
============================================================= |
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