Created
January 16, 2014 18:49
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| tac | |
| ta | |
| scrm-bio-228-232-2:~ olga$ tac | |
| -bash: tac: command not found | |
| scrm-bio-228-232-2:~ olga$ ta | |
| scrm-bio-228-232-2:rosalind-c olga$ cd rosalind_problems/Chapter\ 4-Assembly/figures/ | |
| scrm-bio-228-232-2:figures olga$ git add . ; git commit -m 'finished overlap graph' ; git push origin master | |
| [master 5822e8a] finished overlap graph | |
| 21 files changed, 196 insertions(+), 198 deletions(-) | |
| create mode 100644 rosalind_problems/LaTeX Files/Chapters/Assembly.log | |
| create mode 100644 rosalind_problems/LaTeX Files/images/bwt/PNG/BWT_Watson_Crick.png | |
| create mode 100644 rosalind_problems/LaTeX Files/images/bwt/PNG/Burrows-Wheeler.png | |
| create mode 100644 rosalind_problems/LaTeX Files/images/bwt/PNG/Burrows-Wheeler_matrix.png | |
| rewrite rosalind_problems/LaTeX Files/images/bwt/PNG/LCP_array.png (95%) | |
| create mode 100644 rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-0.png | |
| create mode 100644 rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-1.png | |
| create mode 100644 rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-2.png | |
| create mode 100644 rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-3.png | |
| create mode 100644 rosalind_problems/LaTeX Files/images/rearrangements/PNG/shared_k-mers.png | |
| create mode 100644 rosalind_problems/LaTeX Files/images/rosalind_no_interior.pdf | |
| To [email protected]:bioinf/rosalind-c.git | |
| ! [rejected] master -> master (fetch first) | |
| error: failed to push some refs to '[email protected]:bioinf/rosalind-c.git' | |
| hint: Updates were rejected because the remote contains work that you do | |
| hint: not have locally. This is usually caused by another repository pushing | |
| hint: to the same ref. You may want to first integrate the remote changes | |
| hint: (e.g., 'git pull ...') before pushing again. | |
| hint: See the 'Note about fast-forwards' in 'git push --help' for details. | |
| scrm-bio-228-232-2:figures olga$ git pull origin master | |
| remote: Counting objects: 166, done. | |
| remote: Compressing objects: 100% (153/153), done. | |
| remote: Total 166 (delta 51), reused 116 (delta 13) | |
| Receiving objects: 100% (166/166), 22.46 MiB | 1.68 MiB/s, done. | |
| Resolving deltas: 100% (51/51), done. | |
| From github.com:bioinf/rosalind-c | |
| * branch master -> FETCH_HEAD | |
| 2eaa61f..c7d3989 master -> origin/master | |
| warning: Cannot merge binary files: rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-3.png (HEAD vs. c7d3989e4be32a9e25de69da589a17513fbe47b2) | |
| warning: Cannot merge binary files: rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-2.png (HEAD vs. c7d3989e4be32a9e25de69da589a17513fbe47b2) | |
| warning: Cannot merge binary files: rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-1.png (HEAD vs. c7d3989e4be32a9e25de69da589a17513fbe47b2) | |
| Auto-merging rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-3.png | |
| CONFLICT (add/add): Merge conflict in rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-3.png | |
| Auto-merging rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-2.png | |
| CONFLICT (add/add): Merge conflict in rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-2.png | |
| Auto-merging rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-1.png | |
| CONFLICT (add/add): Merge conflict in rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-1.png | |
| Auto-merging rosalind_problems/LaTeX Files/Chapters/Replication.tex | |
| Auto-merging rosalind_problems/LaTeX Files/Chapters/Rearrangements.tex | |
| Auto-merging rosalind_problems/LaTeX Files/Chapters/Motifs.tex | |
| Auto-merging rosalind_problems/LaTeX Files/Chapters/Bowtie.tex | |
| CONFLICT (content): Merge conflict in rosalind_problems/LaTeX Files/Chapters/Bowtie.tex | |
| Auto-merging rosalind_problems/LaTeX Files/Chapters/Assembly.tex | |
| CONFLICT (content): Merge conflict in rosalind_problems/LaTeX Files/Chapters/Assembly.tex | |
| Auto-merging rosalind_problems/LaTeX Files/Chapters/Antibiotics.tex | |
| Auto-merging rosalind_problems/LaTeX Files/Chapters/Alignment.tex | |
| CONFLICT (content): Merge conflict in rosalind_problems/LaTeX Files/Chapters/Alignment.tex | |
| Auto-merging rosalind_problems/LaTeX Files/Bioinformatics-Algorithms_two-sided_letter.tex | |
| CONFLICT (content): Merge conflict in rosalind_problems/LaTeX Files/Bioinformatics-Algorithms_two-sided_letter.tex | |
| Auto-merging rosalind_problems/LaTeX Files/Bioinformatics-Algorithms_two-sided_letter.cc | |
| CONFLICT (content): Merge conflict in rosalind_problems/LaTeX Files/Bioinformatics-Algorithms_two-sided_letter.cc | |
| Removing rosalind_problems/Chapter 1-Replication/figures/figures.pptx | |
| Automatic merge failed; fix conflicts and then commit the result. | |
| scrm-bio-228-232-2:figures olga$ git checkout rosalind_problems/LaTeX Files/images/bwt | |
| error: pathspec 'rosalind_problems/LaTeX' did not match any file(s) known to git. | |
| error: pathspec 'Files/images/bwt' did not match any file(s) known to git. | |
| scrm-bio-228-232-2:figures olga$ git checkout rosalind_problems/LaTeX Files/images/bwt* | |
| error: pathspec 'rosalind_problems/LaTeX' did not match any file(s) known to git. | |
| error: pathspec 'Files/images/bwt*' did not match any file(s) known to git. | |
| scrm-bio-228-232-2:figures olga$ cd .. | |
| scrm-bio-228-232-2:Chapter 4-Assembly olga$ cd .. | |
| scrm-bio-228-232-2:rosalind_problems olga$ cd .. | |
| scrm-bio-228-232-2:rosalind-c olga$ git checkout rosalind_problems/LaTeX Files/images/bwt* | |
| error: pathspec 'rosalind_problems/LaTeX' did not match any file(s) known to git. | |
| error: pathspec 'Files/images/bwt*' did not match any file(s) known to git. | |
| scrm-bio-228-232-2:rosalind-c olga$ git reset --help | |
| scrm-bio-228-232-2:rosalind-c olga$ git reset --HEAD rosalind_problems/LaTeX Files/images/bwt | |
| error: unknown option `HEAD' | |
| usage: git reset [--mixed | --soft | --hard | --merge | --keep] [-q] [<commit>] | |
| or: git reset [-q] <tree-ish> [--] <paths>... | |
| or: git reset --patch [<tree-ish>] [--] [<paths>...] | |
| -q, --quiet be quiet, only report errors | |
| --mixed reset HEAD and index | |
| --soft reset only HEAD | |
| --hard reset HEAD, index and working tree | |
| --merge reset HEAD, index and working tree | |
| --keep reset HEAD but keep local changes | |
| -p, --patch select hunks interactively | |
| scrm-bio-228-232-2:rosalind-c olga$ git reset rosalind_problems/LaTeX Files/images/bwt | |
| fatal: ambiguous argument 'rosalind_problems/LaTeX': unknown revision or path not in the working tree. | |
| Use '--' to separate paths from revisions, like this: | |
| 'git <command> [<revision>...] -- [<file>...]' | |
| scrm-bio-228-232-2:rosalind-c olga$ git reset -p rosalind_problems/LaTeX Files/images/bwt | |
| fatal: ambiguous argument 'rosalind_problems/LaTeX': unknown revision or path not in the working tree. | |
| Use '--' to separate paths from revisions, like this: | |
| 'git <command> [<revision>...] -- [<file>...]' | |
| scrm-bio-228-232-2:rosalind-c olga$ git checkout rosalind_problems/LaTeX Files/images/bwt | |
| error: pathspec 'rosalind_problems/LaTeX' did not match any file(s) known to git. | |
| error: pathspec 'Files/images/bwt' did not match any file(s) known to git. | |
| scrm-bio-228-232-2:rosalind-c olga$ git checkout rosalind_problems/LaTeX\ Files/images/bwt | |
| error: path 'rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-1.png' is unmerged | |
| error: path 'rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-2.png' is unmerged | |
| error: path 'rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-3.png' is unmerged | |
| scrm-bio-228-232-2:rosalind-c olga$ git status | |
| On branch master | |
| Your branch and 'origin/master' have diverged, | |
| and have 2 and 8 different commits each, respectively. | |
| (use "git pull" to merge the remote branch into yours) | |
| You have unmerged paths. | |
| (fix conflicts and run "git commit") | |
| Changes to be committed: | |
| new file: rosalind_problems/Chapter 1-Replication/figures/Master Figures.pptx | |
| deleted: rosalind_problems/Chapter 1-Replication/figures/figures.pptx | |
| modified: rosalind_problems/Chapter 7-Bowtie/figures/Master Figures.pptx | |
| modified: rosalind_problems/LaTeX Files/Chapters/Antibiotics.tex | |
| modified: rosalind_problems/LaTeX Files/Chapters/Motifs.tex | |
| modified: rosalind_problems/LaTeX Files/Chapters/Rearrangements.tex | |
| modified: rosalind_problems/LaTeX Files/Chapters/Replication.tex | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/backtracking_bowtie.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bantenna.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt-inversion-1.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt-inversion-2.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt-inversion-3.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt-inversion-4-a.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt-inversion-4-b.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt-inversion-4.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_array_suffix_array.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_pattern_matching-1.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_pattern_matching-2.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_pattern_matching-3.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_pattern_matching-4.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_pattern_matching-5.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_pattern_matching-6.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/checkpoint_arrays.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/count_matrices.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/failure_edge.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first-last-1.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first-last-2.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first-last-3.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first-last-4.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first-last-5.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first-last-6.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first_occurrence.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/panamabananas_colored.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/partial_suffix_array.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/pigeonhole-1.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/pigeonhole-2.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/pigeonhole-3.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/preorder_traversal.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/suffix_tree.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/suffix_trie.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/suffix_trie_starting_positions.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/suffix_trie_threading.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/top_bottom_pointers.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/trie.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/trie_threading.png | |
| renamed: rosalind_problems/LaTeX Files/images/bwt/PNG/trie_threading_2.png -> rosalind_problems/LaTeX Files/images/bwt/PNG/trie_threading_1.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/trie_threading_2.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/backtracking_bowtie.pdf | |
| new file: rosalind_problems/LaTeX Files/images/bwt/bantenna.pdf | |
| new file: rosalind_problems/LaTeX Files/images/bwt/failure_edge.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/partial_suffix_array.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/preorder_traversal.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/suffix_tree.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/suffix_trie.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/suffix_trie_starting_positions.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/suffix_trie_threading.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/top_bottom_pointers.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/trie.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/trie_threading_1.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/trie_threading_2.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/asymmetric_replication.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/asymmetric_replication_almost_complete.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/asymmetric_replication_complete.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/half_strands.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/increasing_decreasing_skew.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/naive_replication.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/naive_replication_complete.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/okazaki.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/replication_fork.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/reverse_complement.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/skew_diagram_basic.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/skew_diagram_inversion.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/asymmetric_replication.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/asymmetric_replication_almost_complete.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/asymmetric_replication_complete.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/half_strands.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/increasing_decreasing_skew.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/naive_replication.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/naive_replication_complete.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/okazaki.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/replication_fork.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/reverse_complement.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/skew_diagram_basic.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/skew_diagram_inversion.pdf | |
| Unmerged paths: | |
| (use "git add <file>..." to mark resolution) | |
| both modified: rosalind_problems/LaTeX Files/Bioinformatics-Algorithms_two-sided_letter.cc | |
| both modified: rosalind_problems/LaTeX Files/Bioinformatics-Algorithms_two-sided_letter.tex | |
| both modified: rosalind_problems/LaTeX Files/Chapters/Alignment.tex | |
| both modified: rosalind_problems/LaTeX Files/Chapters/Assembly.tex | |
| both modified: rosalind_problems/LaTeX Files/Chapters/Bowtie.tex | |
| both added: rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-1.png | |
| both added: rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-2.png | |
| both added: rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-3.png | |
| Changes not staged for commit: | |
| (use "git add <file>..." to update what will be committed) | |
| (use "git checkout -- <file>..." to discard changes in working directory) | |
| modified: rosalind_problems/Chapter 4-Assembly/figures/Master Figures.pptx | |
| modified: rosalind_problems/LaTeX Files/BA_two_sided.cc | |
| modified: rosalind_problems/LaTeX Files/Bioinformatics Algorithms.cc | |
| modified: rosalind_problems/LaTeX Files/images/assembly/PNG/path_graph.png | |
| modified: rosalind_problems/LaTeX Files/images/assembly/overlap_graph_lex.pdf | |
| modified: rosalind_problems/LaTeX Files/images/assembly/path_graph.pdf | |
| Untracked files: | |
| (use "git add <file>..." to include in what will be committed) | |
| Pavel_figures.pptx | |
| scrm-bio-228-232-2:rosalind-c olga$ git checkout abcde rosalind_problems/LaTeX\ Files/images/replication | |
| error: pathspec 'abcde' did not match any file(s) known to git. | |
| scrm-bio-228-232-2:rosalind-c olga$ git checkout rosalind_problems/LaTeX\ Files/images/replication | |
| scrm-bio-228-232-2:rosalind-c olga$ git checkout rosalind_problems/LaTeX\ Files/images/bwt/ | |
| error: path 'rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-1.png' is unmerged | |
| error: path 'rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-2.png' is unmerged | |
| error: path 'rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-3.png' is unmerged | |
| scrm-bio-228-232-2:rosalind-c olga$ git stauts | |
| WARNING: You called a Git command named 'stauts', which does not exist. | |
| Continuing under the assumption that you meant 'status' | |
| in 0.1 seconds automatically... | |
| On branch master | |
| Your branch and 'origin/master' have diverged, | |
| and have 2 and 8 different commits each, respectively. | |
| (use "git pull" to merge the remote branch into yours) | |
| You have unmerged paths. | |
| (fix conflicts and run "git commit") | |
| Changes to be committed: | |
| new file: rosalind_problems/Chapter 1-Replication/figures/Master Figures.pptx | |
| deleted: rosalind_problems/Chapter 1-Replication/figures/figures.pptx | |
| modified: rosalind_problems/Chapter 7-Bowtie/figures/Master Figures.pptx | |
| modified: rosalind_problems/LaTeX Files/Chapters/Antibiotics.tex | |
| modified: rosalind_problems/LaTeX Files/Chapters/Motifs.tex | |
| modified: rosalind_problems/LaTeX Files/Chapters/Rearrangements.tex | |
| modified: rosalind_problems/LaTeX Files/Chapters/Replication.tex | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/backtracking_bowtie.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bantenna.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt-inversion-1.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt-inversion-2.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt-inversion-3.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt-inversion-4-a.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt-inversion-4-b.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt-inversion-4.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_array_suffix_array.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_pattern_matching-1.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_pattern_matching-2.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_pattern_matching-3.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_pattern_matching-4.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_pattern_matching-5.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/bwt_pattern_matching-6.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/checkpoint_arrays.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/count_matrices.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/failure_edge.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first-last-1.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first-last-2.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first-last-3.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first-last-4.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first-last-5.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first-last-6.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/first_occurrence.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/panamabananas_colored.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/partial_suffix_array.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/pigeonhole-1.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/pigeonhole-2.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/pigeonhole-3.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/preorder_traversal.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/suffix_tree.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/suffix_trie.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/suffix_trie_starting_positions.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/suffix_trie_threading.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/PNG/top_bottom_pointers.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/trie.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/trie_threading.png | |
| renamed: rosalind_problems/LaTeX Files/images/bwt/PNG/trie_threading_2.png -> rosalind_problems/LaTeX Files/images/bwt/PNG/trie_threading_1.png | |
| modified: rosalind_problems/LaTeX Files/images/bwt/PNG/trie_threading_2.png | |
| new file: rosalind_problems/LaTeX Files/images/bwt/backtracking_bowtie.pdf | |
| new file: rosalind_problems/LaTeX Files/images/bwt/bantenna.pdf | |
| new file: rosalind_problems/LaTeX Files/images/bwt/failure_edge.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/partial_suffix_array.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/preorder_traversal.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/suffix_tree.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/suffix_trie.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/suffix_trie_starting_positions.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/suffix_trie_threading.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/top_bottom_pointers.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/trie.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/trie_threading_1.pdf | |
| modified: rosalind_problems/LaTeX Files/images/bwt/trie_threading_2.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/asymmetric_replication.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/asymmetric_replication_almost_complete.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/asymmetric_replication_complete.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/half_strands.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/increasing_decreasing_skew.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/naive_replication.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/naive_replication_complete.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/okazaki.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/replication_fork.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/reverse_complement.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/skew_diagram_basic.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/PNG/skew_diagram_inversion.png | |
| modified: rosalind_problems/LaTeX Files/images/replication/asymmetric_replication.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/asymmetric_replication_almost_complete.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/asymmetric_replication_complete.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/half_strands.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/increasing_decreasing_skew.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/naive_replication.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/naive_replication_complete.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/okazaki.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/replication_fork.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/reverse_complement.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/skew_diagram_basic.pdf | |
| modified: rosalind_problems/LaTeX Files/images/replication/skew_diagram_inversion.pdf | |
| Unmerged paths: | |
| (use "git add <file>..." to mark resolution) | |
| both modified: rosalind_problems/LaTeX Files/Bioinformatics-Algorithms_two-sided_letter.cc | |
| both modified: rosalind_problems/LaTeX Files/Bioinformatics-Algorithms_two-sided_letter.tex | |
| both modified: rosalind_problems/LaTeX Files/Chapters/Alignment.tex | |
| both modified: rosalind_problems/LaTeX Files/Chapters/Assembly.tex | |
| both modified: rosalind_problems/LaTeX Files/Chapters/Bowtie.tex | |
| both added: rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-1.png | |
| both added: rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-2.png | |
| both added: rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-3.png | |
| Changes not staged for commit: | |
| (use "git add <file>..." to update what will be committed) | |
| (use "git checkout -- <file>..." to discard changes in working directory) | |
| modified: rosalind_problems/Chapter 4-Assembly/figures/Master Figures.pptx | |
| modified: rosalind_problems/LaTeX Files/BA_two_sided.cc | |
| modified: rosalind_problems/LaTeX Files/Bioinformatics Algorithms.cc | |
| modified: rosalind_problems/LaTeX Files/images/assembly/PNG/path_graph.png | |
| modified: rosalind_problems/LaTeX Files/images/assembly/overlap_graph_lex.pdf | |
| modified: rosalind_problems/LaTeX Files/images/assembly/path_graph.pdf | |
| Untracked files: | |
| (use "git add <file>..." to include in what will be committed) | |
| Pavel_figures.pptx | |
| scrm-bio-228-232-2:rosalind-c olga$ git checkout rosalind_problems/LaTeX\ Files/images/bwt/ | |
| error: path 'rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-1.png' is unmerged | |
| error: path 'rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-2.png' is unmerged | |
| error: path 'rosalind_problems/LaTeX Files/images/bwt/PNG/first_try-3.png' is unmerged | |
| scrm-bio-228-232-2:rosalind-c olga$ cd ~/workspace-git/YeoLab/gscripts/ | |
| scrm-bio-228-232-2:gscripts olga$ git checkout miso_one_touch | |
| Branch miso_one_touch set up to track remote branch miso_one_touch from origin. | |
| Switched to a new branch 'miso_one_touch' | |
| scrm-bio-228-232-2:gscripts olga$ git checkout master | |
| Switched to branch 'master' | |
| Your branch is ahead of 'origin/master' by 10 commits. | |
| (use "git push" to publish your local commits) | |
| scrm-bio-228-232-2:gscripts olga$ cd ~/packages/ | |
| scrm-bio-228-232-2:packages olga$ wget http://mirror.ctan.org/systems/texlive/tlnet/install-tl-unx.tar.gz | |
| --2014-01-15 09:31:54-- http://mirror.ctan.org/systems/texlive/tlnet/install-tl-unx.tar.gz | |
| Resolving mirror.ctan.org... 176.28.54.184 | |
| Connecting to mirror.ctan.org|176.28.54.184|:80... connected. | |
| HTTP request sent, awaiting response... 302 Found | |
| Location: http://ctan.mirrorcatalogs.com/systems/texlive/tlnet/install-tl-unx.tar.gz [following] | |
| --2014-01-15 09:31:54-- http://ctan.mirrorcatalogs.com/systems/texlive/tlnet/install-tl-unx.tar.gz | |
| Resolving ctan.mirrorcatalogs.com... 204.45.83.20 | |
| Connecting to ctan.mirrorcatalogs.com|204.45.83.20|:80... connected. | |
| HTTP request sent, awaiting response... 200 OK | |
| Length: 2944765 (2.8M) [application/octet-stream] | |
| Saving to: ‘install-tl-unx.tar.gz’ | |
| 100%[========================================================================================================>] 2,944,765 2.65MB/s in 1.1s | |
| 2014-01-15 09:31:56 (2.65 MB/s) - ‘install-tl-unx.tar.gz’ saved [2944765/2944765] | |
| scrm-bio-228-232-2:packages olga$ tar xzvf install-tl-unx.tar.gz | |
| x install-tl-20140115/ | |
| x install-tl-20140115/readme-txt.dir/ | |
| x install-tl-20140115/readme-txt.dir/README.RU-cp1251 | |
| x install-tl-20140115/readme-txt.dir/README.EN | |
| x install-tl-20140115/readme-txt.dir/README.ZH-CN | |
| x install-tl-20140115/readme-txt.dir/README.JA | |
| x install-tl-20140115/readme-txt.dir/README.FR | |
| x install-tl-20140115/readme-txt.dir/README.SK-ascii | |
| x install-tl-20140115/readme-txt.dir/README.RU-koi8 | |
| x install-tl-20140115/readme-txt.dir/README.CS | |
| x install-tl-20140115/readme-txt.dir/README.IT | |
| x install-tl-20140115/readme-txt.dir/README.PL | |
| x install-tl-20140115/readme-txt.dir/README.DE | |
| x install-tl-20140115/readme-txt.dir/README.SK-il2 | |
| x install-tl-20140115/readme-txt.dir/README.SR | |
| x install-tl-20140115/readme-txt.dir/README.SK-cp1250 | |
| x install-tl-20140115/readme-txt.dir/README.RU | |
| x install-tl-20140115/release-texlive.txt | |
| x install-tl-20140115/LICENSE.CTAN | |
| x install-tl-20140115/install-tl | |
| x install-tl-20140115/README.usergroups | |
| x install-tl-20140115/README | |
| x install-tl-20140115/texmf-dist/ | |
| x install-tl-20140115/texmf-dist/scripts/ | |
| x install-tl-20140115/texmf-dist/scripts/texlive/ | |
| x install-tl-20140115/texmf-dist/scripts/texlive/tlmgr.pl | |
| x install-tl-20140115/texmf-dist/scripts/texlive/tlmgrgui.pl | |
| x install-tl-20140115/texmf-dist/scripts/texlive/uninstall-win32.pl | |
| x install-tl-20140115/texmf-dist/web2c/ | |
| x install-tl-20140115/texmf-dist/web2c/updmap-hdr.cfg | |
| x install-tl-20140115/texmf-dist/web2c/fmtutil-hdr.cnf | |
| x install-tl-20140115/LICENSE.TL | |
| x install-tl-20140115/tlpkg/ | |
| x install-tl-20140115/tlpkg/installer/ | |
| x install-tl-20140115/tlpkg/installer/installer-options.txt | |
| x install-tl-20140115/tlpkg/installer/install-tl.html | |
| x install-tl-20140115/tlpkg/installer/COPYING.MinGW-runtime.txt | |
| x install-tl-20140115/tlpkg/installer/ctan-mirrors.pl | |
| x install-tl-20140115/tlpkg/installer/tl-cmd.bat | |
| x install-tl-20140115/tlpkg/installer/install-menu-perltk.pl | |
| x install-tl-20140115/tlpkg/installer/wget/ | |
| x install-tl-20140115/tlpkg/installer/wget/wget.x86_64-darwin | |
| x install-tl-20140115/tlpkg/installer/wget/wget.universal-darwin | |
| x install-tl-20140115/tlpkg/installer/wget/wget.i386-freebsd | |
| x install-tl-20140115/tlpkg/installer/wget/wget.i386-kfreebsd | |
| x install-tl-20140115/tlpkg/installer/wget/wget.sparc-solaris | |
| x install-tl-20140115/tlpkg/installer/wget/wget.amd64-freebsd | |
| x install-tl-20140115/tlpkg/installer/wget/wget.amd64-kfreebsd | |
| x install-tl-20140115/tlpkg/installer/wget/wget.i386-netbsd | |
| x install-tl-20140115/tlpkg/installer/wget/wget.amd64-netbsd | |
| x install-tl-20140115/tlpkg/installer/install-menu-wizard.pl | |
| x install-tl-20140115/tlpkg/installer/config.guess | |
| x install-tl-20140115/tlpkg/installer/xz/ | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.i386-cygwin.exe | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.armhf-linux | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.i386-kfreebsd | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.i386-netbsd | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.armel-linux | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.mipsel-linux | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.i386-linux | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.powerpc-linux | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.amd64-netbsd | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.x86_64-linux | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.alpha-linux | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.mips-irix | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.amd64-freebsd | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.universal-darwin | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.sparc-solaris | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.amd64-kfreebsd | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.i386-solaris | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.x86_64-solaris | |
| x install-tl-20140115/tlpkg/installer/xz/xz.i386-cygwin.exe | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.i386-freebsd | |
| x install-tl-20140115/tlpkg/installer/xz/xzdec.x86_64-darwin | |
| x install-tl-20140115/tlpkg/installer/tl-tray-menu.ini | |
| x install-tl-20140115/tlpkg/installer/texlive.png | |
| x install-tl-20140115/tlpkg/installer/install-menu-text.pl | |
| x install-tl-20140115/tlpkg/translations/ | |
| x install-tl-20140115/tlpkg/translations/sl.po | |
| x install-tl-20140115/tlpkg/translations/nl.po | |
| x install-tl-20140115/tlpkg/translations/uk.po | |
| x install-tl-20140115/tlpkg/translations/messages.pot | |
| x install-tl-20140115/tlpkg/translations/fr.po | |
| x install-tl-20140115/tlpkg/translations/vi.po | |
| x install-tl-20140115/tlpkg/translations/ru.po | |
| x install-tl-20140115/tlpkg/translations/pl.po | |
| x install-tl-20140115/tlpkg/translations/es.po | |
| x install-tl-20140115/tlpkg/translations/zh_TW.po | |
| x install-tl-20140115/tlpkg/translations/cs.po | |
| x install-tl-20140115/tlpkg/translations/it.po | |
| x install-tl-20140115/tlpkg/translations/pt_BR.po | |
| x install-tl-20140115/tlpkg/translations/translators | |
| x install-tl-20140115/tlpkg/translations/de.po | |
| x install-tl-20140115/tlpkg/translations/sk.po | |
| x install-tl-20140115/tlpkg/translations/ja.po | |
| x install-tl-20140115/tlpkg/translations/zh_CN.po | |
| x install-tl-20140115/tlpkg/translations/sr.po | |
| x install-tl-20140115/tlpkg/TeXLive/ | |
| x install-tl-20140115/tlpkg/TeXLive/TLUtils.pm | |
| x install-tl-20140115/tlpkg/TeXLive/trans.pl | |
| x install-tl-20140115/tlpkg/TeXLive/TLPSRC.pm | |
| x install-tl-20140115/tlpkg/TeXLive/TLConfig.pm | |
| x install-tl-20140115/tlpkg/TeXLive/TLPaper.pm | |
| x install-tl-20140115/tlpkg/TeXLive/waitVariableX.pm | |
| x install-tl-20140115/tlpkg/TeXLive/TLWinGoo.pm | |
| x install-tl-20140115/tlpkg/TeXLive/TLPOBJ.pm | |
| x install-tl-20140115/tlpkg/TeXLive/TLDownload.pm | |
| x install-tl-20140115/tlpkg/TeXLive/TeXCatalogue.pm | |
| x install-tl-20140115/tlpkg/TeXLive/TLTREE.pm | |
| x install-tl-20140115/tlpkg/TeXLive/Splashscreen.pm | |
| x install-tl-20140115/tlpkg/TeXLive/TLConfFile.pm | |
| x install-tl-20140115/tlpkg/TeXLive/TLPDB.pm | |
| x install-tl-20140115/index.html | |
| x install-tl-20140115/readme-html.dir/ | |
| x install-tl-20140115/readme-html.dir/readme.zh-cn.html | |
| x install-tl-20140115/readme-html.dir/readme.ja.html | |
| x install-tl-20140115/readme-html.dir/readme.it.html | |
| x install-tl-20140115/readme-html.dir/readme.fr.html | |
| x install-tl-20140115/readme-html.dir/readme.cs.html | |
| x install-tl-20140115/readme-html.dir/readme.en.html | |
| x install-tl-20140115/readme-html.dir/readme.pl.html | |
| x install-tl-20140115/readme-html.dir/readme.sr.html | |
| x install-tl-20140115/readme-html.dir/readme.ru.html | |
| x install-tl-20140115/readme-html.dir/readme.de.html | |
| scrm-bio-228-232-2:packages olga$ cd install-tl- | |
| -bash: cd: install-tl-: No such file or directory | |
| scrm-bio-228-232-2:packages olga$ cd install-tl- | |
| install-tl-20140115/ install-tl-unx.tar.gz | |
| scrm-bio-228-232-2:packages olga$ cd install-tl-20140115/ | |
| scrm-bio-228-232-2:install-tl-20140115 olga$ ls | |
| LICENSE.CTAN README index.html readme-html.dir release-texlive.txt tlpkg | |
| LICENSE.TL README.usergroups install-tl readme-txt.dir texmf-dist | |
| scrm-bio-228-232-2:install-tl-20140115 olga$ less README | |
| scrm-bio-228-232-2:install-tl-20140115 olga$ lll | |
| -bash: lll: command not found | |
| scrm-bio-228-232-2:install-tl-20140115 olga$ ll | |
| total 216 | |
| -rw-r--r-- 1 olga staff 2.0K Sep 28 2006 LICENSE.CTAN | |
| -rw-r--r-- 1 olga staff 5.0K Jun 5 2011 LICENSE.TL | |
| -rw-r--r-- 1 olga staff 183B Aug 9 2008 README | |
| -rw-r--r-- 1 olga staff 250B Aug 9 2008 README.usergroups | |
| -rw-r--r-- 1 olga staff 1.1K May 31 2010 index.html | |
| -rwxr-xr-x 1 olga staff 78K Sep 15 13:16 install-tl | |
| drwxr-xr-x 12 olga staff 408B Jan 14 18:24 readme-html.dir | |
| drwxr-xr-x 17 olga staff 578B Jan 14 18:24 readme-txt.dir | |
| -rw-r--r-- 1 olga staff 360B May 29 2013 release-texlive.txt | |
| drwxr-xr-x 4 olga staff 136B Jan 14 18:24 texmf-dist | |
| drwxr-xr-x 5 olga staff 170B Jan 14 18:24 tlpkg | |
| scrm-bio-228-232-2:install-tl-20140115 olga$ ./install-tl | |
| Loading http://ctan.mackichan.com/systems/texlive/tlnet/tlpkg/texlive.tlpdb | |
| Installing TeX Live 2013 from: http://ctan.mackichan.com/systems/texlive/tlnet | |
| Platform: x86_64-darwin => 'x86_64 with MacOSX/Darwin' | |
| Distribution: net (downloading) | |
| Using URL: http://ctan.mackichan.com/systems/texlive/tlnet | |
| Directory for temporary files: /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/ | |
| An old installation of TeX Live has been found in /usr/local/texlive/2012 | |
| If you want the selection of collections and various options being taken | |
| over press `y', otherwise anything else. | |
| Import settings from previous TeX Live installation: (y/n): y | |
| Trying to load old TeX Live Database, | |
| Importing settings from old installation in /usr/local/texlive/2012 | |
| ======================> TeX Live installation procedure <===================== | |
| ======> Letters/digits in <angle brackets> indicate <======= | |
| ======> menu items for commands or options <======= | |
| Detected platform: x86_64 with MacOSX/Darwin | |
| <B> binary platforms: 2 out of 21 | |
| <S> set installation scheme (scheme-custom) | |
| <C> customizing installation collections | |
| 43 collections out of 45, disk space required: 3686 MB | |
| <D> directories: | |
| TEXDIR (the main TeX directory): | |
| /usr/local/texlive/2013 | |
| TEXMFLOCAL (directory for site-wide local files): | |
| /usr/local/texlive/texmf-local | |
| TEXMFSYSVAR (directory for variable and automatically generated data): | |
| /usr/local/texlive/2013/texmf-var | |
| TEXMFSYSCONFIG (directory for local config): | |
| /usr/local/texlive/2013/texmf-config | |
| TEXMFVAR (personal directory for variable and automatically generated data): | |
| ~/.texlive2013/texmf-var | |
| TEXMFCONFIG (personal directory for local config): | |
| ~/.texlive2013/texmf-config | |
| TEXMFHOME (directory for user-specific files): | |
| ~/texmf | |
| <O> options: | |
| [X] use letter size instead of A4 by default | |
| [X] allow execution of restricted list of programs via \write18 | |
| [X] create all format files | |
| [X] install macro/font doc tree | |
| [X] install macro/font source tree | |
| <V> set up for portable installation | |
| Actions: | |
| <I> start installation to hard disk | |
| <H> help | |
| <Q> quit | |
| Enter command: I | |
| Installing to: /usr/local/texlive/2013 | |
| Installing [0001/2883, time/total: ??:??/??:??]: 12many [376k] | |
| Installing [0002/2883, time/total: 00:01/01:17:56]: 2up [66k] | |
| Installing [0003/2883, time/total: 00:02/02:12:48]: Asana-Math [458k] | |
| Installing [0004/2883, time/total: 00:03/01:37:40]: ESIEEcv [137k] | |
| Installing [0005/2883, time/total: 00:04/01:53:04]: FAQ-en [4926k] | |
| Installing [0006/2883, time/total: 00:08/39:14]: GS1 [1100k] | |
| Installing [0007/2883, time/total: 00:10/41:24]: HA-prosper [266k] | |
| Installing [0008/2883, time/total: 00:11/43:54]: IEEEconf [188k] | |
| Installing [0009/2883, time/total: 00:13/50:35]: IEEEtran [1341k] | |
| Installing [0010/2883, time/total: 00:15/49:32]: MemoirChapStyles [739k] | |
| Installing [0011/2883, time/total: 00:16/48:46]: SIstyle [338k] | |
| Installing [0012/2883, time/total: 00:18/53:00]: SIunits [284k] | |
| Installing [0013/2883, time/total: 00:19/54:23]: Tabbing [217k] | |
| Installing [0014/2883, time/total: 00:21/58:52]: Type1fonts [516k] | |
| Installing [0015/2883, time/total: 00:22/58:46]: a0poster [119k] | |
| Installing [0016/2883, time/total: 00:23/01:00:47]: a2ping [48k] | |
| Installing [0017/2883, time/total: 00:23/01:00:31]: a2ping.universal-darwin [1k] | |
| Installing [0018/2883, time/total: 00:24/01:03:09]: a2ping.x86_64-darwin [1k] | |
| Installing [0019/2883, time/total: 00:24/01:03:09]: a4wide [133k] | |
| Installing [0020/2883, time/total: 00:25/01:05:00]: a5comb [91k] | |
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| Installing [1548/2883, time/total: 33:55/01:01:49]: luatex [973k] | |
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| Installing [2768/2883, time/total: 01:04:54/01:07:47]: vocaltract [25k] | |
| Installing [2769/2883, time/total: 01:04:55/01:07:48]: volumes [156k] | |
| Installing [2770/2883, time/total: 01:04:56/01:07:48]: voss-de [687k] | |
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| Installing [2776/2883, time/total: 01:05:01/01:07:51]: wadalab [17450k] | |
| Installing [2777/2883, time/total: 01:05:08/01:07:16]: wallpaper [1249k] | |
| Installing [2778/2883, time/total: 01:05:09/01:07:14]: warning [252k] | |
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| Installing [2785/2883, time/total: 01:05:17/01:07:19]: web.x86_64-darwin [70k] | |
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| Installing [2800/2883, time/total: 01:05:35/01:07:29]: xcolor [725k] | |
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| Installing [2809/2883, time/total: 01:05:49/01:07:30]: xecyr [302k] | |
| Installing [2810/2883, time/total: 01:05:50/01:07:31]: xeindex [79k] | |
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| Installing [2812/2883, time/total: 01:05:53/01:07:31]: xesearch [618k] | |
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| Installing [2821/2883, time/total: 01:06:07/01:07:06]: xetexconfig [14k] | |
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| Installing [2823/2883, time/total: 01:06:08/01:07:07]: xetexko [279k] | |
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| Installing [2843/2883, time/total: 01:06:36/01:07:12]: xnewcommand [261k] | |
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| Installing [2848/2883, time/total: 01:06:44/01:07:13]: xpinyin [392k] | |
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| Installing [2872/2883, time/total: 01:07:19/01:07:23]: zapfchan [79k] | |
| Installing [2873/2883, time/total: 01:07:19/01:07:23]: zapfding [46k] | |
| Installing [2874/2883, time/total: 01:07:20/01:07:24]: zed-csp [238k] | |
| Installing [2875/2883, time/total: 01:07:22/01:07:25]: zhmetrics [66k] | |
| Installing [2876/2883, time/total: 01:07:24/01:07:27]: zhnumber [263k] | |
| Installing [2877/2883, time/total: 01:07:25/01:07:27]: zhspacing [161k] | |
| Installing [2878/2883, time/total: 01:07:26/01:07:28]: ziffer [3k] | |
| Installing [2879/2883, time/total: 01:07:26/01:07:28]: zwgetfdate [242k] | |
| Installing [2880/2883, time/total: 01:07:27/01:07:28]: zwpagelayout [587k] | |
| Installing [2881/2883, time/total: 01:07:29/01:07:29]: zxjafbfont [3k] | |
| Installing [2882/2883, time/total: 01:07:29/01:07:29]: zxjafont [119k] | |
| Installing [2883/2883, time/total: 01:07:30/01:07:30]: zxjatype [142k] | |
| Time used for installing the packages: 67:31 | |
| running mktexlsr /usr/local/texlive/2013/texmf-dist ... | |
| mktexlsr: Updating /usr/local/texlive/2013/texmf-dist/ls-R... | |
| mktexlsr: Done. | |
| writing fmtutil.cnf to /usr/local/texlive/2013/texmf-var/web2c/fmtutil.cnf | |
| writing updmap.cfg to /usr/local/texlive/2013/texmf-dist/web2c/updmap.cfg | |
| writing language.dat to /usr/local/texlive/2013/texmf-var/tex/generic/config/language.dat | |
| writing language.def to /usr/local/texlive/2013/texmf-var/tex/generic/config/language.def | |
| writing language.dat.lua to /usr/local/texlive/2013/texmf-var/tex/generic/config/language.dat.lua | |
| running mktexlsr /usr/local/texlive/2013/texmf-var /usr/local/texlive/2013/texmf-config /usr/local/texlive/2013/texmf-dist ... | |
| mktexlsr: Updating /usr/local/texlive/2013/texmf-config/ls-R... | |
| mktexlsr: Updating /usr/local/texlive/2013/texmf-dist/ls-R... | |
| mktexlsr: Updating /usr/local/texlive/2013/texmf-var/ls-R... | |
| mktexlsr: Done. | |
| running updmap-sys...done | |
| setting default paper size to letter | |
| re-running mktexlsr /usr/local/texlive/2013/texmf-var /usr/local/texlive/2013/texmf-config... | |
| mktexlsr: Updating /usr/local/texlive/2013/texmf-config/ls-R... | |
| mktexlsr: Updating /usr/local/texlive/2013/texmf-var/ls-R... | |
| mktexlsr: Done. | |
| setting up ConTeXt MkIV cache with mtxrun --generate ... | |
| resolvers | resolving | variable 'SELFAUTOLOC' set to '/usr/local/texlive/2013/bin/x86_64-darwin' | |
| resolvers | resolving | variable 'SELFAUTODIR' set to '/usr/local/texlive/2013/bin' | |
| resolvers | resolving | variable 'SELFAUTOPARENT' set to '/usr/local/texlive/2013' | |
| resolvers | resolving | variable 'TEXMFCNF' set to '' | |
| resolvers | resolving | variable 'TEXMF' set to '' | |
| resolvers | resolving | variable 'TEXOS' set to 'bin' | |
| resolvers | resolving | | |
| resolvers | resolving | using configuration specification 'home:texmf/web2c;{selfautoloc:,selfautoloc:/share/texmf-local/web2c,selfautoloc:/share/texmf-dist/web2c,selfautoloc:/share/texmf/web2c,selfautoloc:/texmf-local/web2c,selfautoloc:/texmf-dist/web2c,selfautoloc:/texmf/web2c,selfautodir:,selfautodir:/share/texmf-local/web2c,selfautodir:/share/texmf-dist/web2c,selfautodir:/share/texmf/web2c,selfautodir:/texmf-local/web2c,selfautodir:/texmf-dist/web2c,selfautodir:/texmf/web2c,selfautoparent:/../texmf-local/web2c,selfautoparent:,selfautoparent:/share/texmf-local/web2c,selfautoparent:/share/texmf-dist/web2c,selfautoparent:/share/texmf/web2c,selfautoparent:/texmf-local/web2c,selfautoparent:/texmf-dist/web2c,selfautoparent:/texmf/web2c}' | |
| resolvers | resolving | | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/Users/olga/texmf/web2c' from specification 'home:texmf/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on weird path '/usr/local/texlive/2013/bin/x86_64-darwin/' from specification 'selfautoloc:' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/bin/x86_64-darwin/share/texmf-local/web2c' from specification 'selfautoloc:/share/texmf-local/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/bin/x86_64-darwin/share/texmf-dist/web2c' from specification 'selfautoloc:/share/texmf-dist/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/bin/x86_64-darwin/share/texmf/web2c' from specification 'selfautoloc:/share/texmf/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/bin/x86_64-darwin/texmf-local/web2c' from specification 'selfautoloc:/texmf-local/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/bin/x86_64-darwin/texmf-dist/web2c' from specification 'selfautoloc:/texmf-dist/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/bin/x86_64-darwin/texmf/web2c' from specification 'selfautoloc:/texmf/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on weird path '/usr/local/texlive/2013/bin/' from specification 'selfautodir:' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/bin/share/texmf-local/web2c' from specification 'selfautodir:/share/texmf-local/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/bin/share/texmf-dist/web2c' from specification 'selfautodir:/share/texmf-dist/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/bin/share/texmf/web2c' from specification 'selfautodir:/share/texmf/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/bin/texmf-local/web2c' from specification 'selfautodir:/texmf-local/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/bin/texmf-dist/web2c' from specification 'selfautodir:/texmf-dist/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/bin/texmf/web2c' from specification 'selfautodir:/texmf/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/../texmf-local/web2c' from specification 'selfautoparent:/../texmf-local/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on weird path '/usr/local/texlive/2013/' from specification 'selfautoparent:' | |
| resolvers | resolving | found configuration file '/usr/local/texlive/2013/texmfcnf.lua' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/share/texmf-local/web2c' from specification 'selfautoparent:/share/texmf-local/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/share/texmf-dist/web2c' from specification 'selfautoparent:/share/texmf-dist/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/share/texmf/web2c' from specification 'selfautoparent:/share/texmf/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/texmf-local/web2c' from specification 'selfautoparent:/texmf-local/web2c' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/texmf-dist/web2c' from specification 'selfautoparent:/texmf-dist/web2c' | |
| resolvers | resolving | found configuration file '/usr/local/texlive/2013/texmf-dist/web2c/texmfcnf.lua' | |
| resolvers | resolving | looking for 'texmfcnf.lua' on given path '/usr/local/texlive/2013/texmf/web2c' from specification 'selfautoparent:/texmf/web2c' | |
| resolvers | resolving | | |
| resolvers | resolving | loading configuration file 'selfautoparent:/texmfcnf.lua' | |
| resolvers | resolving | | |
| resolvers | resolving | loading configuration file 'selfautoparent:/texmf-dist/web2c/texmfcnf.lua' | |
| resolvers | resolving | | |
| resolvers | resolving | locating list of 'home:.texlive2013/texmf-config' (runtime) (tree:///home:.texlive2013/texmf-config) | |
| resolvers | methods | resolving, method 'locators', how 'uri', handler 'tree', argument 'tree:///home:.texlive2013/texmf-config' | |
| resolvers | trees | locator 'home:.texlive2013/texmf-config' not found | |
| resolvers | resolving | locating list of 'home:texmf' (runtime) (tree:///home:texmf) | |
| resolvers | methods | resolving, method 'locators', how 'uri', handler 'tree', argument 'tree:///home:texmf' | |
| resolvers | trees | locator 'home:texmf' not found | |
| resolvers | resolving | locating list of 'selfautoparent:texmf-config' (cached) | |
| resolvers | methods | resolving, method 'locators', how 'uri', handler 'file', argument 'selfautoparent:texmf-config' | |
| resolvers | files | file locator 'selfautoparent:texmf-config' found as '/usr/local/texlive/2013/texmf-config' | |
| resolvers | resolving | hash 'selfautoparent:texmf-config' appended | |
| resolvers | resolving | locating list of 'selfautoparent:texmf-var' (cached) | |
| resolvers | methods | resolving, method 'locators', how 'uri', handler 'file', argument 'selfautoparent:texmf-var' | |
| resolvers | files | file locator 'selfautoparent:texmf-var' found as '/usr/local/texlive/2013/texmf-var' | |
| resolvers | resolving | hash 'selfautoparent:texmf-var' appended | |
| resolvers | resolving | locating list of 'selfautoparent:texmf-project' (cached) | |
| resolvers | methods | resolving, method 'locators', how 'uri', handler 'file', argument 'selfautoparent:texmf-project' | |
| resolvers | files | file locator 'selfautoparent:texmf-project' not found | |
| resolvers | resolving | locating list of 'selfautoparent:texmf-fonts' (cached) | |
| resolvers | methods | resolving, method 'locators', how 'uri', handler 'file', argument 'selfautoparent:texmf-fonts' | |
| resolvers | files | file locator 'selfautoparent:texmf-fonts' not found | |
| resolvers | resolving | locating list of '/usr/local/texlive/texmf-local' (cached) | |
| resolvers | methods | resolving, method 'locators', how 'uri', handler 'file', argument '/usr/local/texlive/texmf-local' | |
| resolvers | files | file locator '/usr/local/texlive/texmf-local' found as '/usr/local/texlive/texmf-local' | |
| resolvers | resolving | hash '/usr/local/texlive/texmf-local' appended | |
| resolvers | resolving | locating list of 'selfautoparent:texmf-dist' (cached) | |
| resolvers | methods | resolving, method 'locators', how 'uri', handler 'file', argument 'selfautoparent:texmf-dist' | |
| resolvers | files | file locator 'selfautoparent:texmf-dist' found as '/usr/local/texlive/2013/texmf-dist' | |
| resolvers | resolving | hash 'selfautoparent:texmf-dist' appended | |
| resolvers | resolving | | |
| resolvers | methods | resolving, method 'generators', how 'uri', handler 'file', argument 'selfautoparent:texmf-config' | |
| resolvers | expansions | scanning path 'selfautoparent:texmf-config', branch 'selfautoparent:texmf-config' | |
| resolvers | expansions | 6 files found on 9 directories with 2 uppercase remappings | |
| resolvers | methods | resolving, method 'generators', how 'uri', handler 'file', argument 'selfautoparent:texmf-var' | |
| resolvers | expansions | scanning path 'selfautoparent:texmf-var', branch 'selfautoparent:texmf-var' | |
| resolvers | expansions | 17 files found on 19 directories with 1 uppercase remappings | |
| resolvers | methods | resolving, method 'generators', how 'uri', handler 'file', argument '/usr/local/texlive/texmf-local' | |
| resolvers | expansions | scanning path '/usr/local/texlive/texmf-local', branch '/usr/local/texlive/texmf-local' | |
| resolvers | expansions | 1 files found on 24 directories with 1 uppercase remappings | |
| resolvers | methods | resolving, method 'generators', how 'uri', handler 'file', argument 'selfautoparent:texmf-dist' | |
| resolvers | expansions | scanning path 'selfautoparent:texmf-dist', branch 'selfautoparent:texmf-dist' | |
| resolvers | expansions | 118453 files found on 9465 directories with 16249 uppercase remappings | |
| resolvers | resolving | | |
| resolvers | resolving | saving tree 'selfautoparent:texmf-config' | |
| resolvers | caches | hashing tree 'selfautoparent:texmf-config', hash '9d8576a18c59fc65c42b8c6d0dc5211a' | |
| resolvers | caches | hashing tree 'selfautoparent:/texmfcnf.lua;selfautoparent:/texmf-dist/web2c/texmfcnf.lua', hash 'a86c089b384a3076dc514ba966a1fac9' | |
| resolvers | caching | preparing 'files' for 'selfautoparent:texmf-config' | |
| resolvers | caching | category 'files', cachename 'selfautoparent:texmf-config' saved in '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/9d8576a18c59fc65c42b8c6d0dc5211a.lua' | |
| system | lua | compiling '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/9d8576a18c59fc65c42b8c6d0dc5211a.lua' into '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/9d8576a18c59fc65c42b8c6d0dc5211a.luc' | |
| system | lua | dumping '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/9d8576a18c59fc65c42b8c6d0dc5211a.lua' into '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/9d8576a18c59fc65c42b8c6d0dc5211a.luc' stripped | |
| resolvers | caching | 'files' compiled to '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/9d8576a18c59fc65c42b8c6d0dc5211a.luc' | |
| resolvers | resolving | saving tree 'selfautoparent:texmf-var' | |
| resolvers | caches | hashing tree 'selfautoparent:texmf-var', hash '80ba17e36177c570c2b7c4882672efc5' | |
| resolvers | caching | preparing 'files' for 'selfautoparent:texmf-var' | |
| resolvers | caching | category 'files', cachename 'selfautoparent:texmf-var' saved in '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/80ba17e36177c570c2b7c4882672efc5.lua' | |
| system | lua | compiling '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/80ba17e36177c570c2b7c4882672efc5.lua' into '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/80ba17e36177c570c2b7c4882672efc5.luc' | |
| system | lua | dumping '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/80ba17e36177c570c2b7c4882672efc5.lua' into '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/80ba17e36177c570c2b7c4882672efc5.luc' stripped | |
| resolvers | caching | 'files' compiled to '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/80ba17e36177c570c2b7c4882672efc5.luc' | |
| resolvers | resolving | saving tree '/usr/local/texlive/texmf-local' | |
| resolvers | caches | hashing tree '/usr/local/texlive/texmf-local', hash '1f08e3a96247a4bd25d903ca1cb00c0e' | |
| resolvers | caching | preparing 'files' for '/usr/local/texlive/texmf-local' | |
| resolvers | caching | category 'files', cachename '/usr/local/texlive/texmf-local' saved in '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/1f08e3a96247a4bd25d903ca1cb00c0e.lua' | |
| system | lua | compiling '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/1f08e3a96247a4bd25d903ca1cb00c0e.lua' into '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/1f08e3a96247a4bd25d903ca1cb00c0e.luc' | |
| system | lua | dumping '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/1f08e3a96247a4bd25d903ca1cb00c0e.lua' into '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/1f08e3a96247a4bd25d903ca1cb00c0e.luc' stripped | |
| resolvers | caching | 'files' compiled to '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/1f08e3a96247a4bd25d903ca1cb00c0e.luc' | |
| resolvers | resolving | saving tree 'selfautoparent:texmf-dist' | |
| resolvers | caches | hashing tree 'selfautoparent:texmf-dist', hash '929f6dbc83f6d3b65dab91f1efa4aacb' | |
| resolvers | caching | preparing 'files' for 'selfautoparent:texmf-dist' | |
| resolvers | caching | category 'files', cachename 'selfautoparent:texmf-dist' saved in '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/929f6dbc83f6d3b65dab91f1efa4aacb.lua' | |
| system | lua | compiling '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/929f6dbc83f6d3b65dab91f1efa4aacb.lua' into '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/929f6dbc83f6d3b65dab91f1efa4aacb.luc' | |
| system | lua | dumping '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/929f6dbc83f6d3b65dab91f1efa4aacb.lua' into '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/929f6dbc83f6d3b65dab91f1efa4aacb.luc' stripped | |
| resolvers | caching | 'files' compiled to '/usr/local/texlive/2013/texmf-var/luatex-cache/context/a86c089b384a3076dc514ba966a1fac9/trees/929f6dbc83f6d3b65dab91f1efa4aacb.luc' | |
| mtxrun | | |
| mtxrun | runtime: 6.241 seconds | |
| done | |
| pre-generating all format files (fmtutil-sys --all), be patient...done | |
| running package-specific postactions | |
| finished with package-specific postactions | |
| See | |
| /usr/local/texlive/2013/index.html | |
| for links to documentation. The TeX Live web site | |
| contains updates and corrections: http://tug.org/texlive. | |
| TeX Live is a joint project of the TeX user groups around the world; | |
| please consider supporting it by joining the group best for you. The | |
| list of user groups is on the web at http://tug.org/usergroups.html. | |
| Add /usr/local/texlive/2013/texmf-dist/doc/info to INFOPATH. | |
| Add /usr/local/texlive/2013/texmf-dist/doc/man to MANPATH | |
| (if not dynamically found). | |
| Most importantly, add /usr/local/texlive/2013/bin/x86_64-darwin | |
| to your PATH for current and future sessions. | |
| ---------------------------------------------------------------------- | |
| The following environment variables contain the string "tex" | |
| (case-independent). If you're doing anything but adding personal | |
| directories to the system paths, they may well cause trouble somewhere | |
| while running TeX. If you encounter problems, try unsetting them. | |
| Please ignore spurious matches unrelated to TeX. | |
| __CF_USER_TEXT_ENCODING=0x1F5:0:0 | |
| ---------------------------------------------------------------------- | |
| Welcome to TeX Live! | |
| Logfile: /usr/local/texlive/2013/install-tl.log | |
| scrm-bio-228-232-2:install-tl-20140115 olga$ cd ~/workspace-git/seaborn/ | |
| scrm-bio-228-232-2:seaborn olga$ git checkout upstream/master | |
| Note: checking out 'upstream/master'. | |
| You are in 'detached HEAD' state. You can look around, make experimental | |
| changes and commit them, and you can discard any commits you make in this | |
| state without impacting any branches by performing another checkout. | |
| If you want to create a new branch to retain commits you create, you may | |
| do so (now or later) by using -b with the checkout command again. Example: | |
| git checkout -b new_branch_name | |
| HEAD is now at a6b7a36... Merge pull request #62 from phobson/custom-gridweight | |
| scrm-bio-228-232-2:seaborn olga$ git checkout -b pcaplot | |
| Switched to a new branch 'pcaplot' | |
| scrm-bio-228-232-2:seaborn olga$ pip install pymc | |
| Downloading/unpacking pymc | |
| pip can't proceed with requirement 'pymc' due to a pre-existing build directory. | |
| location: /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc | |
| This is likely due to a previous installation that failed. | |
| pip is being responsible and not assuming it can delete this. | |
| Please delete it and try again. | |
| Cleaning up... | |
| scrm-bio-228-232-2:seaborn olga$ rm /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc | |
| rm: /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc: No such file or directory | |
| scrm-bio-228-232-2:seaborn olga$ sudo rm /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc | |
| Password: | |
| rm: /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc: No such file or directory | |
| scrm-bio-228-232-2:seaborn olga$ pip install pymc | |
| Downloading/unpacking pymc | |
| Downloading pymc-2.3.tar.gz (13.1MB): 13.1MB downloaded | |
| Running setup.py egg_info for package pymc | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| IOError: [Errno 2] No such file or directory: 'skip:ppnd7'. Skipping file "skip:ppnd7". | |
| updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(na)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(nb)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension (nmu)' to 'dimension(nmu)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension (na)' to 'dimension(na)'. Ignoring. | |
| rmbadname1: Replacing "index" with "index_bn". | |
| updatevars: "character curterms(20)*24" is mapped to "character curterms(20,24)" | |
| updatevars: "character septerms(20)*24" is mapped to "character septerms(20,24)" | |
| updatevars: "character tokens(maxtok)*(*)" is mapped to "character tokens(maxtok,(*))" | |
| rmbadname1: Replacing "index" with "index_bn". | |
| rmbadname1: Replacing "len" with "len_bn". | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between x, nx | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between w, x, nx | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between n, nx, bin0, delta, x, d | |
| "object of type 'builtin_function_or_method' has no len()" in evaluating 'len(ord)' (available names: []) | |
| Reading fortran codes... | |
| Reading file 'pymc/flib.f' (format:fix,strict) | |
| Reading file 'pymc/histogram.f' (format:fix,strict) | |
| Reading file 'pymc/flib_blas.f' (format:fix,strict) | |
| Reading file 'pymc/blas_wrap.f' (format:fix,strict) | |
| Reading file 'pymc/math.f' (format:fix,strict) | |
| Reading file 'pymc/gibbsit.f' (format:fix,strict) | |
| Line #1125 in pymc/gibbsit.f:" DOUBLE PRECISION INTENT(CACHE,HIDE), DIMENSION(2*ITERACNT) :: WORK" | |
| updatevars: attempt to change the type of "work" ("integer") to "double precision". Ignoring. | |
| Post-processing... | |
| Block: flib | |
| Block: symmetrize | |
| Block: logsum | |
| Block: logsum_cpx | |
| Block: combinationln | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/flib.f:expand_triangular | |
| vars2fortran: No typespec for argument "nf". | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/flib.f:expand_triangular | |
| vars2fortran: No typespec for argument "n". | |
| Block: expand_triangular | |
| Block: mod_to_circle | |
| Block: standardize | |
| Block: gammln | |
| Block: mvgammln | |
| Block: factrl | |
| Block: factln | |
| Block: normcdf | |
| Block: sn_like | |
| Block: rskewnorm | |
| Block: uniform_like | |
| Block: uniform_grad_x | |
| Block: uniform_grad_l | |
| Block: uniform_grad_u | |
| Block: duniform_like | |
| Block: exponweib | |
| Block: exponweib_gx | |
| Block: exponweib_gl | |
| Block: exponweib_gk | |
| Block: exponweib_ga | |
| Block: exponweib_gs | |
| Block: exponweib_ppf | |
| Block: constrain | |
| Block: poisson | |
| Block: poisson_gmu | |
| Block: trpoisson | |
| Block: trpoisson_gmu | |
| Block: t | |
| Block: t_grad_x | |
| Block: t_grad_nu | |
| Block: chi2_grad_nu | |
| Block: nct | |
| Block: multinomial | |
| Block: weibull | |
| Block: weibull_gx | |
| Block: weibull_ga | |
| Block: weibull_gb | |
| Block: logistic | |
| Block: normal | |
| Block: normal_grad_tau | |
| Block: normal_grad_x | |
| Block: normal_grad_mu | |
| Block: hnormal | |
| Block: hnormal_gradx | |
| Block: hnormal_gradtau | |
| Block: lognormal | |
| Block: lognormal_gradx | |
| Block: lognormal_gradmu | |
| Block: lognormal_gradtau | |
| Block: arlognormal | |
| Block: gev | |
| Block: gev_ppf | |
| Block: gamma | |
| Block: gamma_grad_x | |
| Block: gamma_grad_alpha | |
| Block: gamma_grad_beta | |
| Block: igamma | |
| Block: igamma_grad_x | |
| Block: igamma_grad_alpha | |
| Block: igamma_grad_beta | |
| Block: hyperg | |
| Block: geometric | |
| Block: geometric_gp | |
| Block: dirichlet | |
| Block: cauchy | |
| Block: cauchy_grad_x | |
| Block: cauchy_grad_a | |
| Block: cauchy_grad_b | |
| Block: negbin | |
| Block: negbin2 | |
| Block: negbin2_gmu | |
| Block: negbin2_ga | |
| Block: binomial | |
| Block: binomial_gp | |
| Block: bernoulli | |
| Block: bern_grad_p | |
| Block: beta_like | |
| Block: beta_grad_x | |
| Block: beta_grad_a | |
| Block: beta_grad_b | |
| Block: betabin_like | |
| Block: betabin_ga | |
| Block: betabin_gb | |
| Block: mvhyperg | |
| Block: dirmultinom | |
| Block: wishart | |
| Block: trace | |
| Block: gamfun | |
| Block: gammds | |
| Block: psi | |
| Block: gser | |
| Block: gcf | |
| Block: gammq | |
| Block: trans | |
| Block: matmult | |
| Block: dtrm | |
| Block: elgs | |
| Block: bico | |
| Block: chol | |
| Block: hermpoly | |
| Block: set_uniform | |
| Block: categorical | |
| Block: rcat | |
| Block: logit | |
| Block: invlogit | |
| Block: stukel_logit | |
| Block: stukel_invlogit | |
| Block: vonmises | |
| Block: pareto | |
| Block: truncated_pareto | |
| Block: fixed_binsize | |
| Block: weighted_fixed_binsize | |
| Block: fixed_binsize_nd | |
| {'attrspec': ['dimension(n)']} | |
| In: :flib:pymc/histogram.f:qsorti | |
| vars2fortran: No typespec for argument "ord". | |
| Block: qsorti | |
| Block: checksymm | |
| Block: chol_mvnorm | |
| Block: cov_mvnorm | |
| Block: prec_mvnorm | |
| Block: blas_wishart | |
| Block: blas_wishart_cov | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/blas_wrap.f:dcopy_wrap | |
| vars2fortran: No typespec for argument "nx". | |
| Block: dcopy_wrap | |
| Block: dtrmm_wrap | |
| Block: dtrsm_wrap | |
| Block: dpotrf_wrap | |
| Block: dchdc_wrap | |
| Block: dpotrs_wrap | |
| Block: ppnd16 | |
| Block: calerf | |
| Block: derf | |
| Block: derfc | |
| Block: derfcx | |
| Block: gibbsit | |
| Block: matinput | |
| Block: vecinput | |
| Block: oneparse | |
| Block: gibbmain | |
| Block: empquant | |
| Block: dichot | |
| Block: thin | |
| Block: mctest | |
| Block: indtest | |
| Block: mcest | |
| Block: ppnd7 | |
| Block: ssort | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "flib"... | |
| Constructing wrapper function "symmetrize"... | |
| symmetrize(c,[cmin,cmax]) | |
| Constructing wrapper function "logsum"... | |
| s = logsum(x) | |
| Constructing wrapper function "logsum_cpx"... | |
| s = logsum_cpx(x) | |
| Creating wrapper for Fortran function "combinationln"("combinationln")... | |
| Constructing wrapper function "combinationln"... | |
| combinationln = combinationln(n,k) | |
| Constructing wrapper function "expand_triangular"... | |
| t = expand_triangular(d,f) | |
| Constructing wrapper function "mod_to_circle"... | |
| mx = mod_to_circle(x,u,l) | |
| Constructing wrapper function "standardize"... | |
| z = standardize(x,loc,scale) | |
| Creating wrapper for Fortran function "gammln"("gammln")... | |
| Constructing wrapper function "gammln"... | |
| gammln = gammln(xx) | |
| Creating wrapper for Fortran function "mvgammln"("mvgammln")... | |
| Constructing wrapper function "mvgammln"... | |
| mvgammln = mvgammln(x,k) | |
| Creating wrapper for Fortran function "factrl"("factrl")... | |
| Constructing wrapper function "factrl"... | |
| factrl = factrl(n) | |
| Creating wrapper for Fortran function "factln"("factln")... | |
| Constructing wrapper function "factln"... | |
| factln = factln(n) | |
| Constructing wrapper function "normcdf"... | |
| normcdf(x) | |
| Constructing wrapper function "sn_like"... | |
| like = sn_like(x,mu,tau,alph) | |
| Constructing wrapper function "rskewnorm"... | |
| x = rskewnorm(nx,mu,tau,alph,rn) | |
| Constructing wrapper function "uniform_like"... | |
| like = uniform_like(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_x"... | |
| gradxlike = uniform_grad_x(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_l"... | |
| gradllike = uniform_grad_l(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_u"... | |
| gradulike = uniform_grad_u(x,lower,upper) | |
| Constructing wrapper function "duniform_like"... | |
| like = duniform_like(x,lower,upper) | |
| Constructing wrapper function "exponweib"... | |
| like = exponweib(x,a,c,loc,scale) | |
| Constructing wrapper function "exponweib_gx"... | |
| gradlike = exponweib_gx(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_gl"... | |
| gradlike = exponweib_gl(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_gk"... | |
| gradlike = exponweib_gk(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_ga"... | |
| gradlike = exponweib_ga(x,alpha,k,loc,scale,[nk]) | |
| Constructing wrapper function "exponweib_gs"... | |
| gradlike = exponweib_gs(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_ppf"... | |
| ppf = exponweib_ppf(q,a,c) | |
| Constructing wrapper function "constrain"... | |
| pass = constrain(x,a,b,allow_equal) | |
| Constructing wrapper function "poisson"... | |
| like = poisson(x,mu) | |
| Constructing wrapper function "poisson_gmu"... | |
| gradlike = poisson_gmu(x,mu) | |
| Constructing wrapper function "trpoisson"... | |
| like = trpoisson(x,mu,k) | |
| Constructing wrapper function "trpoisson_gmu"... | |
| gradlike = trpoisson_gmu(x,mu,k) | |
| Constructing wrapper function "t"... | |
| like = t(x,nu) | |
| Constructing wrapper function "t_grad_x"... | |
| gradlikex = t_grad_x(x,nu) | |
| Constructing wrapper function "t_grad_nu"... | |
| gradlikenu = t_grad_nu(x,nu) | |
| Constructing wrapper function "chi2_grad_nu"... | |
| gradlikenu = chi2_grad_nu(x,nu) | |
| Constructing wrapper function "nct"... | |
| like = nct(x,mu,lam,nu) | |
| Constructing wrapper function "multinomial"... | |
| like = multinomial(x,n,p) | |
| Constructing wrapper function "weibull"... | |
| like = weibull(x,alpha,beta) | |
| Constructing wrapper function "weibull_gx"... | |
| gradlike = weibull_gx(x,alpha,beta) | |
| Constructing wrapper function "weibull_ga"... | |
| gradlike = weibull_ga(x,alpha,beta) | |
| Constructing wrapper function "weibull_gb"... | |
| gradlike = weibull_gb(x,alpha,beta) | |
| Constructing wrapper function "logistic"... | |
| like = logistic(x,mu,tau) | |
| Constructing wrapper function "normal"... | |
| like = normal(x,mu,tau) | |
| Constructing wrapper function "normal_grad_tau"... | |
| grad_tau_like = normal_grad_tau(x,mu,tau) | |
| Constructing wrapper function "normal_grad_x"... | |
| grad_x_like = normal_grad_x(x,mu,tau) | |
| Constructing wrapper function "normal_grad_mu"... | |
| gradmulike = normal_grad_mu(x,mu,tau) | |
| Constructing wrapper function "hnormal"... | |
| like = hnormal(x,tau) | |
| Constructing wrapper function "hnormal_gradx"... | |
| gradlike = hnormal_gradx(x,tau) | |
| Constructing wrapper function "hnormal_gradtau"... | |
| gradlike = hnormal_gradtau(x,tau) | |
| Constructing wrapper function "lognormal"... | |
| like = lognormal(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradx"... | |
| gradlike = lognormal_gradx(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradmu"... | |
| gradlike = lognormal_gradmu(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradtau"... | |
| gradlike = lognormal_gradtau(x,mu,tau) | |
| Constructing wrapper function "arlognormal"... | |
| like = arlognormal(x,mu,sigma,rho,beta) | |
| Constructing wrapper function "gev"... | |
| like = gev(x,xi,mu,sigma) | |
| Constructing wrapper function "gev_ppf"... | |
| ppf = gev_ppf(q,xi) | |
| Constructing wrapper function "gamma"... | |
| like = gamma(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_x"... | |
| gradxlike = gamma_grad_x(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_alpha"... | |
| gradalphalike = gamma_grad_alpha(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_beta"... | |
| gradbetalike = gamma_grad_beta(x,alpha,beta) | |
| Constructing wrapper function "igamma"... | |
| like = igamma(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_x"... | |
| gradxlike = igamma_grad_x(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_alpha"... | |
| gradalphalike = igamma_grad_alpha(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_beta"... | |
| gradbetalike = igamma_grad_beta(x,alpha,beta) | |
| Constructing wrapper function "hyperg"... | |
| like = hyperg(x,draws,success,total) | |
| Constructing wrapper function "geometric"... | |
| like = geometric(x,p) | |
| Constructing wrapper function "geometric_gp"... | |
| gradlike = geometric_gp(x,p) | |
| Constructing wrapper function "dirichlet"... | |
| like = dirichlet(x,theta) | |
| Constructing wrapper function "cauchy"... | |
| like = cauchy(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_x"... | |
| gradlike = cauchy_grad_x(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_a"... | |
| gradlike = cauchy_grad_a(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_b"... | |
| gradlike = cauchy_grad_b(x,alpha,beta) | |
| Constructing wrapper function "negbin"... | |
| like = negbin(x,r,p) | |
| Constructing wrapper function "negbin2"... | |
| like = negbin2(x,mu,a) | |
| Constructing wrapper function "negbin2_gmu"... | |
| gradlike = negbin2_gmu(x,mu,alpha) | |
| Constructing wrapper function "negbin2_ga"... | |
| gradlike = negbin2_ga(x,mu,alpha) | |
| Constructing wrapper function "binomial"... | |
| like = binomial(x,n,p) | |
| Constructing wrapper function "binomial_gp"... | |
| gradlike = binomial_gp(x,n,p) | |
| Constructing wrapper function "bernoulli"... | |
| like = bernoulli(x,p) | |
| Constructing wrapper function "bern_grad_p"... | |
| grad_like = bern_grad_p(x,p) | |
| Constructing wrapper function "beta_like"... | |
| like = beta_like(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_x"... | |
| gradlikex = beta_grad_x(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_a"... | |
| gradlikea = beta_grad_a(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_b"... | |
| gradlikeb = beta_grad_b(x,alpha,beta) | |
| Constructing wrapper function "betabin_like"... | |
| like = betabin_like(x,alpha,beta,n) | |
| Constructing wrapper function "betabin_ga"... | |
| gradlike = betabin_ga(x,alpha,beta,n) | |
| Constructing wrapper function "betabin_gb"... | |
| gradlike = betabin_gb(x,alpha,beta,n) | |
| Constructing wrapper function "mvhyperg"... | |
| like = mvhyperg(x,color) | |
| Constructing wrapper function "dirmultinom"... | |
| like = dirmultinom(x,theta) | |
| Constructing wrapper function "wishart"... | |
| like = wishart(x,n,sigma) | |
| Constructing wrapper function "trace"... | |
| trace(mat,tr,[k]) | |
| Constructing wrapper function "gamfun"... | |
| gx = gamfun(xx) | |
| Creating wrapper for Fortran function "gammds"("gammds")... | |
| Constructing wrapper function "gammds"... | |
| gammds = gammds(y,p,ifault) | |
| Creating wrapper for Fortran function "psi"("psi")... | |
| Constructing wrapper function "psi"... | |
| psi = psi(x) | |
| Constructing wrapper function "gser"... | |
| gser(gamser,a,x,gln) | |
| Constructing wrapper function "gcf"... | |
| gcf(gammcf,a,x,gln) | |
| Creating wrapper for Fortran function "gammq"("gammq")... | |
| Constructing wrapper function "gammq"... | |
| gammq = gammq(a,x) | |
| Constructing wrapper function "trans"... | |
| tmat = trans(mat) | |
| Constructing wrapper function "matmult"... | |
| prod = matmult(mat1,mat2) | |
| Constructing wrapper function "dtrm"... | |
| d = dtrm(a) | |
| Constructing wrapper function "elgs"... | |
| elgs(a,indx,[n]) | |
| Creating wrapper for Fortran function "bico"("bico")... | |
| Constructing wrapper function "bico"... | |
| bico = bico(n,k) | |
| Constructing wrapper function "chol"... | |
| c = chol(a,[n]) | |
| Constructing wrapper function "hermpoly"... | |
| cx = hermpoly(n,x) | |
| Constructing wrapper function "set_uniform"... | |
| set_uniform(seed1,seed2) | |
| Constructing wrapper function "categorical"... | |
| like = categorical(x,p) | |
| Constructing wrapper function "rcat"... | |
| s = rcat(p,rands) | |
| Constructing wrapper function "logit"... | |
| ltheta = logit(theta) | |
| Constructing wrapper function "invlogit"... | |
| theta = invlogit(ltheta) | |
| Constructing wrapper function "stukel_logit"... | |
| ltheta = stukel_logit(theta,a1,a2,[overwrite_theta]) | |
| Constructing wrapper function "stukel_invlogit"... | |
| theta = stukel_invlogit(ltheta,a1,a2,[overwrite_ltheta]) | |
| Constructing wrapper function "vonmises"... | |
| like = vonmises(x,mu,kappa) | |
| Constructing wrapper function "pareto"... | |
| like = pareto(x,alpha,m) | |
| Constructing wrapper function "truncated_pareto"... | |
| like = truncated_pareto(x,alpha,m,b) | |
| Constructing wrapper function "fixed_binsize"... | |
| h = fixed_binsize(x,bin0,delta,n) | |
| Constructing wrapper function "weighted_fixed_binsize"... | |
| h = weighted_fixed_binsize(x,w,bin0,delta,n) | |
| Constructing wrapper function "fixed_binsize_nd"... | |
| count = fixed_binsize_nd(x,bin0,delta,n,nc) | |
| Constructing wrapper function "qsorti"... | |
| qsorti(ord,a,[n]) | |
| Constructing wrapper function "checksymm"... | |
| cs = checksymm(x) | |
| Constructing wrapper function "chol_mvnorm"... | |
| like = chol_mvnorm(x,mu,sig,[overwrite_x,overwrite_mu]) | |
| Constructing wrapper function "cov_mvnorm"... | |
| like = cov_mvnorm(x,mu,c,[overwrite_x,overwrite_mu,overwrite_c]) | |
| Constructing wrapper function "prec_mvnorm"... | |
| like = prec_mvnorm(x,mu,tau,[overwrite_x,overwrite_mu,overwrite_tau]) | |
| Constructing wrapper function "blas_wishart"... | |
| like = blas_wishart(x,n,t,[overwrite_x,overwrite_t]) | |
| Constructing wrapper function "blas_wishart_cov"... | |
| like = blas_wishart_cov(x,n,v,[overwrite_x,overwrite_v]) | |
| Constructing wrapper function "dcopy_wrap"... | |
| dcopy_wrap(x,y) | |
| Constructing wrapper function "dtrmm_wrap"... | |
| dtrmm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dtrsm_wrap"... | |
| dtrsm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dpotrf_wrap"... | |
| info = dpotrf_wrap(a) | |
| Constructing wrapper function "dchdc_wrap"... | |
| piv,info = dchdc_wrap(a) | |
| Constructing wrapper function "dpotrs_wrap"... | |
| info = dpotrs_wrap(chol_fac,b,[uplo]) | |
| Creating wrapper for Fortran function "ppnd16"("ppnd16")... | |
| Constructing wrapper function "ppnd16"... | |
| ppnd16 = ppnd16(p,ifault) | |
| Constructing wrapper function "calerf"... | |
| calerf(arg,result,jint) | |
| Creating wrapper for Fortran function "derf"("derf")... | |
| Constructing wrapper function "derf"... | |
| derf = derf(x) | |
| Creating wrapper for Fortran function "derfc"("derfc")... | |
| Constructing wrapper function "derfc"... | |
| derfc = derfc(x) | |
| Creating wrapper for Fortran function "derfcx"("derfcx")... | |
| Constructing wrapper function "derfcx"... | |
| derfcx = derfcx(x) | |
| Constructing wrapper function "matinput"... | |
| matinput(uid,matout,rowused,colused,r15,[rowmax,colmax]) | |
| Constructing wrapper function "vecinput"... | |
| vecinput(uid,vecout,vecused,r15,[vecmax]) | |
| Constructing wrapper function "oneparse"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '(*)' | |
| oneparse(instring,delimit,tokens,tokcnt,r15,[maxtok]) | |
| Constructing wrapper function "gibbmain"... | |
| nmin,kthin,nburn,nprec,kmind = gibbmain(original,q,r,s,epsilon) | |
| Creating wrapper for Fortran function "empquant"("empquant")... | |
| Constructing wrapper function "empquant"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '*' | |
| empquant = empquant(data,q,work,[iteracnt]) | |
| Constructing wrapper function "dichot"... | |
| dichot(data,cutpt,zt,[iteracnt]) | |
| Constructing wrapper function "thin"... | |
| thin(series,kthin,result,thincnt,[iteracnt]) | |
| Constructing wrapper function "mctest"... | |
| mctest(data,g2,bic,[datacnt]) | |
| Constructing wrapper function "indtest"... | |
| indtest(data,g2,bic,[datacnt]) | |
| Constructing wrapper function "mcest"... | |
| mcest(data,alpha,beta,[datacnt]) | |
| Creating wrapper for Fortran function "ppnd7"("ppnd7")... | |
| Constructing wrapper function "ppnd7"... | |
| ppnd7 = ppnd7(p,ifault) | |
| Constructing wrapper function "ssort"... | |
| ssort(x,y,kflag,[n]) | |
| Constructing COMMON block support for "unif_seeds"... | |
| s1,s2 | |
| Wrote C/API module "flib" to file "build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c" | |
| Fortran 77 wrappers are saved to "build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/linalg_utils.f' (format:fix,strict) | |
| Reading file 'pymc/blas_wrap.f' (format:fix,strict) | |
| Post-processing... | |
| Block: linalg_utils | |
| Block: remove_duplicates | |
| Block: check_repeats | |
| Block: diag_call | |
| Block: cov_fun | |
| {'attrspec': ['intent(hide)']} | |
| In: :linalg_utils:pymc/gp/linalg_utils.f:basis_diag_call | |
| vars2fortran: No typespec for argument "nbas". | |
| Block: basis_diag_call | |
| Block: gp_array_logp | |
| Block: asqs | |
| {'attrspec': ['intent(hide)']} | |
| In: :linalg_utils:pymc/blas_wrap.f:dcopy_wrap | |
| vars2fortran: No typespec for argument "nx". | |
| Block: dcopy_wrap | |
| Block: dtrmm_wrap | |
| Block: dtrsm_wrap | |
| Block: dpotrf_wrap | |
| Block: dchdc_wrap | |
| Block: dpotrs_wrap | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Constructing call-back function "cb_cov_fun_in_diag_call__user__routines" | |
| def cov_fun(xe): return q | |
| Building module "linalg_utils"... | |
| Constructing wrapper function "remove_duplicates"... | |
| nr,rf,rt,nu,xu,ui = remove_duplicates(x) | |
| Constructing wrapper function "check_repeats"... | |
| f,new_indices,n_new_indices = check_repeats(x,x_sofar,f_sofar) | |
| Constructing wrapper function "diag_call"... | |
| v = diag_call(x,cov_fun,[cov_fun_extra_args]) | |
| Constructing wrapper function "basis_diag_call"... | |
| v = basis_diag_call(basis_x) | |
| Constructing wrapper function "gp_array_logp"... | |
| like = gp_array_logp(x,mu,sig,[overwrite_x,overwrite_mu]) | |
| Constructing wrapper function "asqs"... | |
| asqs(c,s,[cmin,cmax]) | |
| Constructing wrapper function "dcopy_wrap"... | |
| dcopy_wrap(x,y) | |
| Constructing wrapper function "dtrmm_wrap"... | |
| dtrmm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dtrsm_wrap"... | |
| dtrsm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dpotrf_wrap"... | |
| info = dpotrf_wrap(a) | |
| Constructing wrapper function "dchdc_wrap"... | |
| piv,info = dchdc_wrap(a) | |
| Constructing wrapper function "dpotrs_wrap"... | |
| info = dpotrs_wrap(chol_fac,b,[uplo]) | |
| Wrote C/API module "linalg_utils" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/incomplete_chol.f' (format:fix,strict) | |
| Post-processing... | |
| Block: incomplete_chol | |
| Block: ichol_continue | |
| Block: rowfun | |
| Block: ichol | |
| Block: rowfun | |
| {'attrspec': ['intent(hide)']} | |
| In: :incomplete_chol:pymc/gp/incomplete_chol.f:ichol_basis | |
| vars2fortran: No typespec for argument "n_nug". | |
| Block: ichol_basis | |
| Block: ichol_full | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Constructing call-back function "cb_rowfun_in_ichol_continue__user__routines" | |
| def rowfun(itot,x,rowvec): return | |
| Constructing call-back function "cb_rowfun_in_ichol__user__routines" | |
| def rowfun(i,x,rowvec): return | |
| Building module "incomplete_chol"... | |
| Constructing wrapper function "ichol_continue"... | |
| m,piv = ichol_continue(sig,diag,piv,reltol,x,rowfun,mold,[overwrite_x,rowfun_extra_args]) | |
| Constructing wrapper function "ichol"... | |
| sig,m,piv = ichol(diag,reltol,x,rowfun,rl,[overwrite_x,rowfun_extra_args]) | |
| Constructing wrapper function "ichol_basis"... | |
| sig,p,m = ichol_basis(basis,nug,reltol) | |
| Constructing wrapper function "ichol_full"... | |
| sig,m,p = ichol_full(c,reltol) | |
| Wrote C/API module "incomplete_chol" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/cov_funs/isotropic_cov_funs.f' (format:fix,strict) | |
| Reading file 'blas/BLAS/dscal.f' (format:fix,strict) | |
| Post-processing... | |
| Block: isotropic_cov_funs | |
| Block: imul | |
| Block: symmetrize | |
| Block: matern | |
| Block: nsmatrn | |
| Block: stein_spatiotemporal | |
| Block: nsst | |
| Block: gaussian | |
| Block: exponential | |
| Block: brownian | |
| Block: frac_brownian | |
| Block: pow_exp | |
| Block: sphere | |
| Block: quadratic | |
| Block: dgamma | |
| Block: rkbesl | |
| Block: dscal | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "isotropic_cov_funs"... | |
| Constructing wrapper function "imul"... | |
| imul(c,a,[cmin,cmax,symm]) | |
| Constructing wrapper function "symmetrize"... | |
| symmetrize(c,[cmin,cmax]) | |
| Constructing wrapper function "matern"... | |
| matern(c,diff_degree,[cmin,cmax,symm]) | |
| Constructing wrapper function "nsmatrn"... | |
| nsmatrn(c,ddx,ddy,hx,hy,nmax,[cmin,cmax,symm]) | |
| Constructing wrapper function "stein_spatiotemporal"... | |
| stein_spatiotemporal(c,gt,origin_val,[cmin,cmax,symm]) | |
| Constructing wrapper function "nsst"... | |
| nsst(c,gt,origin_val,hx,hy,[cmin,cmax,symm]) | |
| Constructing wrapper function "gaussian"... | |
| gaussian(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "exponential"... | |
| exponential(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "brownian"... | |
| brownian(c,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "frac_brownian"... | |
| frac_brownian(c,x,y,h,[cmin,cmax,symm]) | |
| Constructing wrapper function "pow_exp"... | |
| pow_exp(c,pow,[cmin,cmax,symm]) | |
| Constructing wrapper function "sphere"... | |
| sphere(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "quadratic"... | |
| quadratic(c,phi,[cmin,cmax,symm]) | |
| Creating wrapper for Fortran function "dgamma"("dgamma")... | |
| Constructing wrapper function "dgamma"... | |
| dgamma = dgamma(x) | |
| Constructing wrapper function "rkbesl"... | |
| bk = rkbesl(x,alpha,nb,ize,ncalc) | |
| Constructing wrapper function "dscal"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '*' | |
| dscal(n,da,dx,incx) | |
| Wrote C/API module "isotropic_cov_funs" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c" | |
| Fortran 77 wrappers are saved to "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/cov_funs/distances.f' (format:fix,strict) | |
| Post-processing... | |
| Block: distances | |
| Block: euclidean | |
| Block: geographic | |
| Block: paniso_geo_rad | |
| Block: aniso_geo_rad | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "distances"... | |
| Constructing wrapper function "euclidean"... | |
| euclidean(d,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "geographic"... | |
| geographic(d,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "paniso_geo_rad"... | |
| paniso_geo_rad(d,x,y,ctrs,scals,[cmin,cmax,symm]) | |
| Constructing wrapper function "aniso_geo_rad"... | |
| aniso_geo_rad(d,x,y,inc,ecc,[cmin,cmax,symm]) | |
| Wrote C/API module "distances" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| warning: no files found matching 'README.txt' | |
| warning: no files found matching 'INSTALL.txt' | |
| warning: no files found matching 'docs/UserGuide.pdf' | |
| Installing collected packages: pymc | |
| Running setup.py install for pymc | |
| unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
| unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| customize UnixCCompiler | |
| customize UnixCCompiler using build_ext | |
| customize Gnu95FCompiler | |
| Found executable /usr/local/bin/gfortran | |
| customize Gnu95FCompiler | |
| customize Gnu95FCompiler using build_ext | |
| building 'pymc.flib' extension | |
| compiling C sources | |
| C compiler: clang -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/opt/zlib/include | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| extra options: '-msse3' | |
| clang: build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:18: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16817:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds] | |
| d = shape(x,2); | |
| ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:86:24: note: expanded from macro 'shape' | |
| #define shape(var,dim) var ## _Dims[dim] | |
| ^ | |
| <scratch space>:394:1: note: expanded from here | |
| x_Dims | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16718:3: note: array 'x_Dims' declared here | |
| npy_intp x_Dims[2] = {-1, -1}; | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:181:12: warning: unused function 'f2py_size' [-Wunused-function] | |
| static int f2py_size(PyArrayObject* var, ...) | |
| ^ | |
| 3 warnings generated. | |
| clang: build/src.macosx-10.9-x86_64-2.7/fortranobject.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.c:2: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] | |
| if ((fp->defs[i].func==NULL)) { | |
| ~~~~~~~~~~~~~~~~^~~~~~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: remove extraneous parentheses around the comparison to silence this warning | |
| if ((fp->defs[i].func==NULL)) { | |
| ~ ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: use '=' to turn this equality comparison into an assignment | |
| if ((fp->defs[i].func==NULL)) { | |
| ^~ | |
| = | |
| 2 warnings generated. | |
| clang: cephes/chbevl.c | |
| clang: cephes/i0.c | |
| clang: cephes/c2f.c | |
| compiling Fortran sources | |
| Fortran f77 compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran f90 compiler: /usr/local/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran fix compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| gfortran:f77: pymc/flib.f | |
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| pymc/flib.f:316.55: | |
| DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like | |
| 1 | |
| Warning: Unused variable 'd_now' declared at (1) | |
| pymc/flib.f:314.42: | |
| INTEGER i, nx, nalph, nmu, ntau, tnx | |
| 1 | |
| Warning: Unused variable 'tnx' declared at (1) | |
| pymc/flib.f:442.71: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'gradxlike' at (1) | |
| pymc/flib.f:461.40: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'high' declared at (1) | |
| pymc/flib.f:458.36: | |
| INTEGER n, nlower, nupper, i | |
| 1 | |
| Warning: Unused variable 'i' declared at (1) | |
| pymc/flib.f:461.29: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'like' declared at (1) | |
| pymc/flib.f:461.34: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'low' declared at (1) | |
| pymc/flib.f:442.39: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'lower' at (1) | |
| pymc/flib.f:442.45: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'upper' at (1) | |
| pymc/flib.f:442.33: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'x' at (1) | |
| pymc/flib.f:692.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:760.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:834.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:906.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:976.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:1186.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1185.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1185.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1300.55: | |
| DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf | |
| 1 | |
| Warning: Unused variable 'cdf' declared at (1) | |
| pymc/flib.f:1302.29: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1302.36: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'gammq' declared at (1) | |
| pymc/flib.f:1301.59: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumcdf' declared at (1) | |
| pymc/flib.f:1301.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1301.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1402.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2154.40: | |
| DOUBLE PRECISION gradlike(n), grad | |
| 1 | |
| Warning: Unused variable 'grad' declared at (1) | |
| pymc/flib.f:2665.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2728.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2793.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2903.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2959.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3021.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3396.58: | |
| DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike | |
| 1 | |
| Warning: Unused variable 'glike' declared at (1) | |
| pymc/flib.f:3646.37: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3646.29: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3706.37: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3706.29: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3836.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:4039.26: | |
| DOUBLE PRECISION psi | |
| 1 | |
| Warning: Unused variable 'psi' declared at (1) | |
| pymc/flib.f:4266.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:4332.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:5184.35: | |
| DOUBLE PRECISION like, factln, infinity, sump | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:5186.23: | |
| INTEGER i,j,n_tmp | |
| 1 | |
| Warning: Unused variable 'n_tmp' declared at (1) | |
| pymc/flib.f:5434.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5488.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5481.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5535.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5528.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f: In function 'elgs': | |
| pymc/flib.f:4882:0: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| K = I | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gl': | |
| pymc/flib.f:778:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gs': | |
| pymc/flib.f:994:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| gfortran:f77: pymc/histogram.f | |
| gfortran:f77: pymc/flib_blas.f | |
| pymc/flib_blas.f:202.25: | |
| DOUBLE PRECISION PI | |
| 1 | |
| Warning: Unused variable 'pi' declared at (1) | |
| gfortran:f77: pymc/blas_wrap.f | |
| gfortran:f77: pymc/math.f | |
| pymc/math.f:396.6: | |
| DOUBLE PRECISION FUNCTION DERF(X) | |
| 1 | |
| Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| pymc/math.f:417.6: | |
| DOUBLE PRECISION FUNCTION DERFC(X) | |
| 1 | |
| Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| gfortran:f77: pymc/gibbsit.f | |
| pymc/gibbsit.f:2160.5: | |
| 215 IF (R .GT. .5898437) GO TO 220 | |
| 1 | |
| Warning: Label 215 at (1) defined but not used | |
| pymc/gibbsit.f:2077.5: | |
| 115 IF (R .GT. .5898437) GO TO 120 | |
| 1 | |
| Warning: Label 115 at (1) defined but not used | |
| pymc/gibbsit.f:2064.5: | |
| 15 IF (KFLAG.GE.1) GO TO 30 | |
| 1 | |
| Warning: Label 15 at (1) defined but not used | |
| pymc/gibbsit.f:1204.48: | |
| cutpt = empquant(original,iteracnt,qhat,work) | |
| 1 | |
| Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) | |
| gfortran:f77: build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f | |
| /usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| error: Command "/usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate" failed with exit status 1 | |
| Complete output from command /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import setuptools;__file__='/private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-Ibs__t-record/install-record.txt --single-version-externally-managed: | |
| running install | |
| running build | |
| running config_cc | |
| unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
| running config_fc | |
| unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
| running build_src | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| running build_py | |
| creating build/lib.macosx-10.9-x86_64-2.7 | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/calc_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CircularStochastic.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CommonDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/datatypes.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/decorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/diagnostics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/InstantiationDecorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Matplot.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Node.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NormalApproximation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NumpyDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/progressbar.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/PyMCObjects.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/ScipyDistributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/six.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/StepMethods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/threadpool.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/base.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5ea.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/no_trace.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/pickle.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/ram.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/sqlite.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/txt.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/custom_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_gof.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_linear.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_null.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/gelman_bioassay.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma_data.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/weibull_fit.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/zip.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/covparams.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mesh_choice.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/PyMCmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/realizations.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/objectmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_adaptive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_AM.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_binary_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_convergence.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_database.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_GP_MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_gradients.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_instantiation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_interactive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_MCMCSampler.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_norm_approx.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_special_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/BasisCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Covariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/FullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gp_submodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gpplots.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/GPutils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/step_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/bases.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/brownian.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/cov_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/nsmatern.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| running build_ext | |
| customize UnixCCompiler | |
| customize UnixCCompiler using build_ext | |
| customize Gnu95FCompiler | |
| Found executable /usr/local/bin/gfortran | |
| customize Gnu95FCompiler | |
| customize Gnu95FCompiler using build_ext | |
| building 'pymc.flib' extension | |
| compiling C sources | |
| C compiler: clang -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/opt/zlib/include | |
| creating build/temp.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/cephes | |
| creating build/temp.macosx-10.9-x86_64-2.7/build | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| extra options: '-msse3' | |
| clang: build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:18: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16817:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds] | |
| d = shape(x,2); | |
| ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:86:24: note: expanded from macro 'shape' | |
| #define shape(var,dim) var ## _Dims[dim] | |
| ^ | |
| <scratch space>:394:1: note: expanded from here | |
| x_Dims | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16718:3: note: array 'x_Dims' declared here | |
| npy_intp x_Dims[2] = {-1, -1}; | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:181:12: warning: unused function 'f2py_size' [-Wunused-function] | |
| static int f2py_size(PyArrayObject* var, ...) | |
| ^ | |
| 3 warnings generated. | |
| clang: build/src.macosx-10.9-x86_64-2.7/fortranobject.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.c:2: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] | |
| if ((fp->defs[i].func==NULL)) { | |
| ~~~~~~~~~~~~~~~~^~~~~~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: remove extraneous parentheses around the comparison to silence this warning | |
| if ((fp->defs[i].func==NULL)) { | |
| ~ ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: use '=' to turn this equality comparison into an assignment | |
| if ((fp->defs[i].func==NULL)) { | |
| ^~ | |
| = | |
| 2 warnings generated. | |
| clang: cephes/chbevl.c | |
| clang: cephes/i0.c | |
| clang: cephes/c2f.c | |
| compiling Fortran sources | |
| Fortran f77 compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran f90 compiler: /usr/local/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran fix compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| creating build/temp.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| gfortran:f77: pymc/flib.f | |
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| pymc/flib.f:316.55: | |
| DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like | |
| 1 | |
| Warning: Unused variable 'd_now' declared at (1) | |
| pymc/flib.f:314.42: | |
| INTEGER i, nx, nalph, nmu, ntau, tnx | |
| 1 | |
| Warning: Unused variable 'tnx' declared at (1) | |
| pymc/flib.f:442.71: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'gradxlike' at (1) | |
| pymc/flib.f:461.40: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'high' declared at (1) | |
| pymc/flib.f:458.36: | |
| INTEGER n, nlower, nupper, i | |
| 1 | |
| Warning: Unused variable 'i' declared at (1) | |
| pymc/flib.f:461.29: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'like' declared at (1) | |
| pymc/flib.f:461.34: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'low' declared at (1) | |
| pymc/flib.f:442.39: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'lower' at (1) | |
| pymc/flib.f:442.45: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'upper' at (1) | |
| pymc/flib.f:442.33: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'x' at (1) | |
| pymc/flib.f:692.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:760.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:834.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:906.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:976.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:1186.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1185.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1185.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1300.55: | |
| DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf | |
| 1 | |
| Warning: Unused variable 'cdf' declared at (1) | |
| pymc/flib.f:1302.29: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1302.36: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'gammq' declared at (1) | |
| pymc/flib.f:1301.59: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumcdf' declared at (1) | |
| pymc/flib.f:1301.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1301.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1402.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2154.40: | |
| DOUBLE PRECISION gradlike(n), grad | |
| 1 | |
| Warning: Unused variable 'grad' declared at (1) | |
| pymc/flib.f:2665.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2728.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2793.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2903.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2959.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3021.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3396.58: | |
| DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike | |
| 1 | |
| Warning: Unused variable 'glike' declared at (1) | |
| pymc/flib.f:3646.37: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3646.29: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3706.37: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3706.29: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3836.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:4039.26: | |
| DOUBLE PRECISION psi | |
| 1 | |
| Warning: Unused variable 'psi' declared at (1) | |
| pymc/flib.f:4266.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:4332.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:5184.35: | |
| DOUBLE PRECISION like, factln, infinity, sump | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:5186.23: | |
| INTEGER i,j,n_tmp | |
| 1 | |
| Warning: Unused variable 'n_tmp' declared at (1) | |
| pymc/flib.f:5434.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5488.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5481.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5535.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5528.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f: In function 'elgs': | |
| pymc/flib.f:4882:0: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| K = I | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gl': | |
| pymc/flib.f:778:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gs': | |
| pymc/flib.f:994:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| gfortran:f77: pymc/histogram.f | |
| gfortran:f77: pymc/flib_blas.f | |
| pymc/flib_blas.f:202.25: | |
| DOUBLE PRECISION PI | |
| 1 | |
| Warning: Unused variable 'pi' declared at (1) | |
| gfortran:f77: pymc/blas_wrap.f | |
| gfortran:f77: pymc/math.f | |
| pymc/math.f:396.6: | |
| DOUBLE PRECISION FUNCTION DERF(X) | |
| 1 | |
| Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| pymc/math.f:417.6: | |
| DOUBLE PRECISION FUNCTION DERFC(X) | |
| 1 | |
| Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| gfortran:f77: pymc/gibbsit.f | |
| pymc/gibbsit.f:2160.5: | |
| 215 IF (R .GT. .5898437) GO TO 220 | |
| 1 | |
| Warning: Label 215 at (1) defined but not used | |
| pymc/gibbsit.f:2077.5: | |
| 115 IF (R .GT. .5898437) GO TO 120 | |
| 1 | |
| Warning: Label 115 at (1) defined but not used | |
| pymc/gibbsit.f:2064.5: | |
| 15 IF (KFLAG.GE.1) GO TO 30 | |
| 1 | |
| Warning: Label 15 at (1) defined but not used | |
| pymc/gibbsit.f:1204.48: | |
| cutpt = empquant(original,iteracnt,qhat,work) | |
| 1 | |
| Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) | |
| gfortran:f77: build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f | |
| /usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| error: Command "/usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate" failed with exit status 1 | |
| ---------------------------------------- | |
| Cleaning up... | |
| Command /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import setuptools;__file__='/private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-Ibs__t-record/install-record.txt --single-version-externally-managed failed with error code 1 in /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc | |
| Storing complete log in /Users/olga/.pip/pip.log | |
| scrm-bio-228-232-2:seaborn olga$ cd ~/workspace-git/ | |
| scrm-bio-228-232-2:workspace-git olga$ brew install suite-sparse | |
| Warning: suite-sparse-4.2.1 already installed | |
| scrm-bio-228-232-2:workspace-git olga$ ln -s /usr/local/Cellar/suite-sparse/4.2.1/include/ /usr/local/include/suitesparse | |
| scrm-bio-228-232-2:workspace-git olga$ pip install git+https://github.com/njsmith/scikits-sparse.git | |
| Downloading/unpacking git+https://github.com/njsmith/scikits-sparse.git | |
| Cloning https://github.com/njsmith/scikits-sparse.git to /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-R6Yi4u-build | |
| Running setup.py egg_info for package from git+https://github.com/njsmith/scikits-sparse.git | |
| warning: no files found matching 'COPYING' | |
| no previously-included directories found matching 'doc/_build' | |
| warning: no previously-included files matching '*~' found anywhere in distribution | |
| warning: no previously-included files matching '*.so' found anywhere in distribution | |
| warning: no previously-included files matching '*.pyc' found anywhere in distribution | |
| Requirement already satisfied (use --upgrade to upgrade): numpy in /usr/local/lib/python2.7/site-packages (from scikits.sparse==0.1-dev) | |
| Requirement already satisfied (use --upgrade to upgrade): scipy in /usr/local/lib/python2.7/site-packages (from scikits.sparse==0.1-dev) | |
| Installing collected packages: scikits.sparse | |
| Running setup.py install for scikits.sparse | |
| cythoning scikits/sparse/cholmod.pyx to scikits/sparse/cholmod.c | |
| warning: scikits/sparse/cholmod.pyx:32:8: 'stdlib' is deprecated, use 'libc.stdlib' | |
| warning: scikits/sparse/cholmod.pyx:33:8: 'python' is deprecated, use 'cpython' | |
| building 'scikits.sparse.cholmod' extension | |
| clang -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/opt/zlib/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c scikits/sparse/cholmod.c -o build/temp.macosx-10.9-x86_64-2.7/scikits/sparse/cholmod.o | |
| In file included from scikits/sparse/cholmod.c:315: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| scikits/sparse/cholmod.c:2932:39: warning: incompatible pointer types assigning to 'void (*)(int, const char *, int, const char *)' from 'void (*)(int, char *, int, char *)' [-Wincompatible-pointer-types] | |
| __pyx_v_self->_common.error_handler = ((void (*)(int, char *, int, char *))__pyx_f_7scikits_6sparse_7cholmod__error_handler); | |
| ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| In file included from scikits/sparse/cholmod.c:316: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:327: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: unused function '_import_umath' [-Wunused-function] | |
| _import_umath(void) | |
| ^ | |
| 3 warnings generated. | |
| clang -bundle -undefined dynamic_lookup -L/usr/local/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/zlib/lib -I/usr/local/opt/zlib/include build/temp.macosx-10.9-x86_64-2.7/scikits/sparse/cholmod.o -lcholmod -o build/lib.macosx-10.9-x86_64-2.7/scikits/sparse/cholmod.so | |
| Skipping installation of /usr/local/lib/python2.7/site-packages/scikits/__init__.py (namespace package) | |
| warning: no files found matching 'COPYING' | |
| no previously-included directories found matching 'doc/_build' | |
| warning: no previously-included files matching '*~' found anywhere in distribution | |
| warning: no previously-included files matching '*.so' found anywhere in distribution | |
| warning: no previously-included files matching '*.pyc' found anywhere in distribution | |
| Installing /usr/local/lib/python2.7/site-packages/scikits.sparse-0.1_dev-py2.7-nspkg.pth | |
| Successfully installed scikits.sparse | |
| Cleaning up... | |
| scrm-bio-228-232-2:workspace-git olga$ pip install pymc | |
| Downloading/unpacking pymc | |
| Downloading pymc-2.3.tar.gz (13.1MB): 13.1MB downloaded | |
| Running setup.py egg_info for package pymc | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| IOError: [Errno 2] No such file or directory: 'skip:ppnd7'. Skipping file "skip:ppnd7". | |
| updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(na)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(nb)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension (nmu)' to 'dimension(nmu)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension (na)' to 'dimension(na)'. Ignoring. | |
| rmbadname1: Replacing "index" with "index_bn". | |
| updatevars: "character curterms(20)*24" is mapped to "character curterms(20,24)" | |
| updatevars: "character septerms(20)*24" is mapped to "character septerms(20,24)" | |
| updatevars: "character tokens(maxtok)*(*)" is mapped to "character tokens(maxtok,(*))" | |
| rmbadname1: Replacing "index" with "index_bn". | |
| rmbadname1: Replacing "len" with "len_bn". | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between x, nx | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between w, x, nx | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between n, nx, bin0, delta, x, d | |
| "object of type 'builtin_function_or_method' has no len()" in evaluating 'len(ord)' (available names: []) | |
| Reading fortran codes... | |
| Reading file 'pymc/flib.f' (format:fix,strict) | |
| Reading file 'pymc/histogram.f' (format:fix,strict) | |
| Reading file 'pymc/flib_blas.f' (format:fix,strict) | |
| Reading file 'pymc/blas_wrap.f' (format:fix,strict) | |
| Reading file 'pymc/math.f' (format:fix,strict) | |
| Reading file 'pymc/gibbsit.f' (format:fix,strict) | |
| Line #1125 in pymc/gibbsit.f:" DOUBLE PRECISION INTENT(CACHE,HIDE), DIMENSION(2*ITERACNT) :: WORK" | |
| updatevars: attempt to change the type of "work" ("integer") to "double precision". Ignoring. | |
| Post-processing... | |
| Block: flib | |
| Block: symmetrize | |
| Block: logsum | |
| Block: logsum_cpx | |
| Block: combinationln | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/flib.f:expand_triangular | |
| vars2fortran: No typespec for argument "nf". | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/flib.f:expand_triangular | |
| vars2fortran: No typespec for argument "n". | |
| Block: expand_triangular | |
| Block: mod_to_circle | |
| Block: standardize | |
| Block: gammln | |
| Block: mvgammln | |
| Block: factrl | |
| Block: factln | |
| Block: normcdf | |
| Block: sn_like | |
| Block: rskewnorm | |
| Block: uniform_like | |
| Block: uniform_grad_x | |
| Block: uniform_grad_l | |
| Block: uniform_grad_u | |
| Block: duniform_like | |
| Block: exponweib | |
| Block: exponweib_gx | |
| Block: exponweib_gl | |
| Block: exponweib_gk | |
| Block: exponweib_ga | |
| Block: exponweib_gs | |
| Block: exponweib_ppf | |
| Block: constrain | |
| Block: poisson | |
| Block: poisson_gmu | |
| Block: trpoisson | |
| Block: trpoisson_gmu | |
| Block: t | |
| Block: t_grad_x | |
| Block: t_grad_nu | |
| Block: chi2_grad_nu | |
| Block: nct | |
| Block: multinomial | |
| Block: weibull | |
| Block: weibull_gx | |
| Block: weibull_ga | |
| Block: weibull_gb | |
| Block: logistic | |
| Block: normal | |
| Block: normal_grad_tau | |
| Block: normal_grad_x | |
| Block: normal_grad_mu | |
| Block: hnormal | |
| Block: hnormal_gradx | |
| Block: hnormal_gradtau | |
| Block: lognormal | |
| Block: lognormal_gradx | |
| Block: lognormal_gradmu | |
| Block: lognormal_gradtau | |
| Block: arlognormal | |
| Block: gev | |
| Block: gev_ppf | |
| Block: gamma | |
| Block: gamma_grad_x | |
| Block: gamma_grad_alpha | |
| Block: gamma_grad_beta | |
| Block: igamma | |
| Block: igamma_grad_x | |
| Block: igamma_grad_alpha | |
| Block: igamma_grad_beta | |
| Block: hyperg | |
| Block: geometric | |
| Block: geometric_gp | |
| Block: dirichlet | |
| Block: cauchy | |
| Block: cauchy_grad_x | |
| Block: cauchy_grad_a | |
| Block: cauchy_grad_b | |
| Block: negbin | |
| Block: negbin2 | |
| Block: negbin2_gmu | |
| Block: negbin2_ga | |
| Block: binomial | |
| Block: binomial_gp | |
| Block: bernoulli | |
| Block: bern_grad_p | |
| Block: beta_like | |
| Block: beta_grad_x | |
| Block: beta_grad_a | |
| Block: beta_grad_b | |
| Block: betabin_like | |
| Block: betabin_ga | |
| Block: betabin_gb | |
| Block: mvhyperg | |
| Block: dirmultinom | |
| Block: wishart | |
| Block: trace | |
| Block: gamfun | |
| Block: gammds | |
| Block: psi | |
| Block: gser | |
| Block: gcf | |
| Block: gammq | |
| Block: trans | |
| Block: matmult | |
| Block: dtrm | |
| Block: elgs | |
| Block: bico | |
| Block: chol | |
| Block: hermpoly | |
| Block: set_uniform | |
| Block: categorical | |
| Block: rcat | |
| Block: logit | |
| Block: invlogit | |
| Block: stukel_logit | |
| Block: stukel_invlogit | |
| Block: vonmises | |
| Block: pareto | |
| Block: truncated_pareto | |
| Block: fixed_binsize | |
| Block: weighted_fixed_binsize | |
| Block: fixed_binsize_nd | |
| {'attrspec': ['dimension(n)']} | |
| In: :flib:pymc/histogram.f:qsorti | |
| vars2fortran: No typespec for argument "ord". | |
| Block: qsorti | |
| Block: checksymm | |
| Block: chol_mvnorm | |
| Block: cov_mvnorm | |
| Block: prec_mvnorm | |
| Block: blas_wishart | |
| Block: blas_wishart_cov | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/blas_wrap.f:dcopy_wrap | |
| vars2fortran: No typespec for argument "nx". | |
| Block: dcopy_wrap | |
| Block: dtrmm_wrap | |
| Block: dtrsm_wrap | |
| Block: dpotrf_wrap | |
| Block: dchdc_wrap | |
| Block: dpotrs_wrap | |
| Block: ppnd16 | |
| Block: calerf | |
| Block: derf | |
| Block: derfc | |
| Block: derfcx | |
| Block: gibbsit | |
| Block: matinput | |
| Block: vecinput | |
| Block: oneparse | |
| Block: gibbmain | |
| Block: empquant | |
| Block: dichot | |
| Block: thin | |
| Block: mctest | |
| Block: indtest | |
| Block: mcest | |
| Block: ppnd7 | |
| Block: ssort | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "flib"... | |
| Constructing wrapper function "symmetrize"... | |
| symmetrize(c,[cmin,cmax]) | |
| Constructing wrapper function "logsum"... | |
| s = logsum(x) | |
| Constructing wrapper function "logsum_cpx"... | |
| s = logsum_cpx(x) | |
| Creating wrapper for Fortran function "combinationln"("combinationln")... | |
| Constructing wrapper function "combinationln"... | |
| combinationln = combinationln(n,k) | |
| Constructing wrapper function "expand_triangular"... | |
| t = expand_triangular(d,f) | |
| Constructing wrapper function "mod_to_circle"... | |
| mx = mod_to_circle(x,u,l) | |
| Constructing wrapper function "standardize"... | |
| z = standardize(x,loc,scale) | |
| Creating wrapper for Fortran function "gammln"("gammln")... | |
| Constructing wrapper function "gammln"... | |
| gammln = gammln(xx) | |
| Creating wrapper for Fortran function "mvgammln"("mvgammln")... | |
| Constructing wrapper function "mvgammln"... | |
| mvgammln = mvgammln(x,k) | |
| Creating wrapper for Fortran function "factrl"("factrl")... | |
| Constructing wrapper function "factrl"... | |
| factrl = factrl(n) | |
| Creating wrapper for Fortran function "factln"("factln")... | |
| Constructing wrapper function "factln"... | |
| factln = factln(n) | |
| Constructing wrapper function "normcdf"... | |
| normcdf(x) | |
| Constructing wrapper function "sn_like"... | |
| like = sn_like(x,mu,tau,alph) | |
| Constructing wrapper function "rskewnorm"... | |
| x = rskewnorm(nx,mu,tau,alph,rn) | |
| Constructing wrapper function "uniform_like"... | |
| like = uniform_like(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_x"... | |
| gradxlike = uniform_grad_x(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_l"... | |
| gradllike = uniform_grad_l(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_u"... | |
| gradulike = uniform_grad_u(x,lower,upper) | |
| Constructing wrapper function "duniform_like"... | |
| like = duniform_like(x,lower,upper) | |
| Constructing wrapper function "exponweib"... | |
| like = exponweib(x,a,c,loc,scale) | |
| Constructing wrapper function "exponweib_gx"... | |
| gradlike = exponweib_gx(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_gl"... | |
| gradlike = exponweib_gl(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_gk"... | |
| gradlike = exponweib_gk(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_ga"... | |
| gradlike = exponweib_ga(x,alpha,k,loc,scale,[nk]) | |
| Constructing wrapper function "exponweib_gs"... | |
| gradlike = exponweib_gs(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_ppf"... | |
| ppf = exponweib_ppf(q,a,c) | |
| Constructing wrapper function "constrain"... | |
| pass = constrain(x,a,b,allow_equal) | |
| Constructing wrapper function "poisson"... | |
| like = poisson(x,mu) | |
| Constructing wrapper function "poisson_gmu"... | |
| gradlike = poisson_gmu(x,mu) | |
| Constructing wrapper function "trpoisson"... | |
| like = trpoisson(x,mu,k) | |
| Constructing wrapper function "trpoisson_gmu"... | |
| gradlike = trpoisson_gmu(x,mu,k) | |
| Constructing wrapper function "t"... | |
| like = t(x,nu) | |
| Constructing wrapper function "t_grad_x"... | |
| gradlikex = t_grad_x(x,nu) | |
| Constructing wrapper function "t_grad_nu"... | |
| gradlikenu = t_grad_nu(x,nu) | |
| Constructing wrapper function "chi2_grad_nu"... | |
| gradlikenu = chi2_grad_nu(x,nu) | |
| Constructing wrapper function "nct"... | |
| like = nct(x,mu,lam,nu) | |
| Constructing wrapper function "multinomial"... | |
| like = multinomial(x,n,p) | |
| Constructing wrapper function "weibull"... | |
| like = weibull(x,alpha,beta) | |
| Constructing wrapper function "weibull_gx"... | |
| gradlike = weibull_gx(x,alpha,beta) | |
| Constructing wrapper function "weibull_ga"... | |
| gradlike = weibull_ga(x,alpha,beta) | |
| Constructing wrapper function "weibull_gb"... | |
| gradlike = weibull_gb(x,alpha,beta) | |
| Constructing wrapper function "logistic"... | |
| like = logistic(x,mu,tau) | |
| Constructing wrapper function "normal"... | |
| like = normal(x,mu,tau) | |
| Constructing wrapper function "normal_grad_tau"... | |
| grad_tau_like = normal_grad_tau(x,mu,tau) | |
| Constructing wrapper function "normal_grad_x"... | |
| grad_x_like = normal_grad_x(x,mu,tau) | |
| Constructing wrapper function "normal_grad_mu"... | |
| gradmulike = normal_grad_mu(x,mu,tau) | |
| Constructing wrapper function "hnormal"... | |
| like = hnormal(x,tau) | |
| Constructing wrapper function "hnormal_gradx"... | |
| gradlike = hnormal_gradx(x,tau) | |
| Constructing wrapper function "hnormal_gradtau"... | |
| gradlike = hnormal_gradtau(x,tau) | |
| Constructing wrapper function "lognormal"... | |
| like = lognormal(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradx"... | |
| gradlike = lognormal_gradx(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradmu"... | |
| gradlike = lognormal_gradmu(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradtau"... | |
| gradlike = lognormal_gradtau(x,mu,tau) | |
| Constructing wrapper function "arlognormal"... | |
| like = arlognormal(x,mu,sigma,rho,beta) | |
| Constructing wrapper function "gev"... | |
| like = gev(x,xi,mu,sigma) | |
| Constructing wrapper function "gev_ppf"... | |
| ppf = gev_ppf(q,xi) | |
| Constructing wrapper function "gamma"... | |
| like = gamma(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_x"... | |
| gradxlike = gamma_grad_x(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_alpha"... | |
| gradalphalike = gamma_grad_alpha(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_beta"... | |
| gradbetalike = gamma_grad_beta(x,alpha,beta) | |
| Constructing wrapper function "igamma"... | |
| like = igamma(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_x"... | |
| gradxlike = igamma_grad_x(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_alpha"... | |
| gradalphalike = igamma_grad_alpha(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_beta"... | |
| gradbetalike = igamma_grad_beta(x,alpha,beta) | |
| Constructing wrapper function "hyperg"... | |
| like = hyperg(x,draws,success,total) | |
| Constructing wrapper function "geometric"... | |
| like = geometric(x,p) | |
| Constructing wrapper function "geometric_gp"... | |
| gradlike = geometric_gp(x,p) | |
| Constructing wrapper function "dirichlet"... | |
| like = dirichlet(x,theta) | |
| Constructing wrapper function "cauchy"... | |
| like = cauchy(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_x"... | |
| gradlike = cauchy_grad_x(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_a"... | |
| gradlike = cauchy_grad_a(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_b"... | |
| gradlike = cauchy_grad_b(x,alpha,beta) | |
| Constructing wrapper function "negbin"... | |
| like = negbin(x,r,p) | |
| Constructing wrapper function "negbin2"... | |
| like = negbin2(x,mu,a) | |
| Constructing wrapper function "negbin2_gmu"... | |
| gradlike = negbin2_gmu(x,mu,alpha) | |
| Constructing wrapper function "negbin2_ga"... | |
| gradlike = negbin2_ga(x,mu,alpha) | |
| Constructing wrapper function "binomial"... | |
| like = binomial(x,n,p) | |
| Constructing wrapper function "binomial_gp"... | |
| gradlike = binomial_gp(x,n,p) | |
| Constructing wrapper function "bernoulli"... | |
| like = bernoulli(x,p) | |
| Constructing wrapper function "bern_grad_p"... | |
| grad_like = bern_grad_p(x,p) | |
| Constructing wrapper function "beta_like"... | |
| like = beta_like(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_x"... | |
| gradlikex = beta_grad_x(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_a"... | |
| gradlikea = beta_grad_a(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_b"... | |
| gradlikeb = beta_grad_b(x,alpha,beta) | |
| Constructing wrapper function "betabin_like"... | |
| like = betabin_like(x,alpha,beta,n) | |
| Constructing wrapper function "betabin_ga"... | |
| gradlike = betabin_ga(x,alpha,beta,n) | |
| Constructing wrapper function "betabin_gb"... | |
| gradlike = betabin_gb(x,alpha,beta,n) | |
| Constructing wrapper function "mvhyperg"... | |
| like = mvhyperg(x,color) | |
| Constructing wrapper function "dirmultinom"... | |
| like = dirmultinom(x,theta) | |
| Constructing wrapper function "wishart"... | |
| like = wishart(x,n,sigma) | |
| Constructing wrapper function "trace"... | |
| trace(mat,tr,[k]) | |
| Constructing wrapper function "gamfun"... | |
| gx = gamfun(xx) | |
| Creating wrapper for Fortran function "gammds"("gammds")... | |
| Constructing wrapper function "gammds"... | |
| gammds = gammds(y,p,ifault) | |
| Creating wrapper for Fortran function "psi"("psi")... | |
| Constructing wrapper function "psi"... | |
| psi = psi(x) | |
| Constructing wrapper function "gser"... | |
| gser(gamser,a,x,gln) | |
| Constructing wrapper function "gcf"... | |
| gcf(gammcf,a,x,gln) | |
| Creating wrapper for Fortran function "gammq"("gammq")... | |
| Constructing wrapper function "gammq"... | |
| gammq = gammq(a,x) | |
| Constructing wrapper function "trans"... | |
| tmat = trans(mat) | |
| Constructing wrapper function "matmult"... | |
| prod = matmult(mat1,mat2) | |
| Constructing wrapper function "dtrm"... | |
| d = dtrm(a) | |
| Constructing wrapper function "elgs"... | |
| elgs(a,indx,[n]) | |
| Creating wrapper for Fortran function "bico"("bico")... | |
| Constructing wrapper function "bico"... | |
| bico = bico(n,k) | |
| Constructing wrapper function "chol"... | |
| c = chol(a,[n]) | |
| Constructing wrapper function "hermpoly"... | |
| cx = hermpoly(n,x) | |
| Constructing wrapper function "set_uniform"... | |
| set_uniform(seed1,seed2) | |
| Constructing wrapper function "categorical"... | |
| like = categorical(x,p) | |
| Constructing wrapper function "rcat"... | |
| s = rcat(p,rands) | |
| Constructing wrapper function "logit"... | |
| ltheta = logit(theta) | |
| Constructing wrapper function "invlogit"... | |
| theta = invlogit(ltheta) | |
| Constructing wrapper function "stukel_logit"... | |
| ltheta = stukel_logit(theta,a1,a2,[overwrite_theta]) | |
| Constructing wrapper function "stukel_invlogit"... | |
| theta = stukel_invlogit(ltheta,a1,a2,[overwrite_ltheta]) | |
| Constructing wrapper function "vonmises"... | |
| like = vonmises(x,mu,kappa) | |
| Constructing wrapper function "pareto"... | |
| like = pareto(x,alpha,m) | |
| Constructing wrapper function "truncated_pareto"... | |
| like = truncated_pareto(x,alpha,m,b) | |
| Constructing wrapper function "fixed_binsize"... | |
| h = fixed_binsize(x,bin0,delta,n) | |
| Constructing wrapper function "weighted_fixed_binsize"... | |
| h = weighted_fixed_binsize(x,w,bin0,delta,n) | |
| Constructing wrapper function "fixed_binsize_nd"... | |
| count = fixed_binsize_nd(x,bin0,delta,n,nc) | |
| Constructing wrapper function "qsorti"... | |
| qsorti(ord,a,[n]) | |
| Constructing wrapper function "checksymm"... | |
| cs = checksymm(x) | |
| Constructing wrapper function "chol_mvnorm"... | |
| like = chol_mvnorm(x,mu,sig,[overwrite_x,overwrite_mu]) | |
| Constructing wrapper function "cov_mvnorm"... | |
| like = cov_mvnorm(x,mu,c,[overwrite_x,overwrite_mu,overwrite_c]) | |
| Constructing wrapper function "prec_mvnorm"... | |
| like = prec_mvnorm(x,mu,tau,[overwrite_x,overwrite_mu,overwrite_tau]) | |
| Constructing wrapper function "blas_wishart"... | |
| like = blas_wishart(x,n,t,[overwrite_x,overwrite_t]) | |
| Constructing wrapper function "blas_wishart_cov"... | |
| like = blas_wishart_cov(x,n,v,[overwrite_x,overwrite_v]) | |
| Constructing wrapper function "dcopy_wrap"... | |
| dcopy_wrap(x,y) | |
| Constructing wrapper function "dtrmm_wrap"... | |
| dtrmm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dtrsm_wrap"... | |
| dtrsm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dpotrf_wrap"... | |
| info = dpotrf_wrap(a) | |
| Constructing wrapper function "dchdc_wrap"... | |
| piv,info = dchdc_wrap(a) | |
| Constructing wrapper function "dpotrs_wrap"... | |
| info = dpotrs_wrap(chol_fac,b,[uplo]) | |
| Creating wrapper for Fortran function "ppnd16"("ppnd16")... | |
| Constructing wrapper function "ppnd16"... | |
| ppnd16 = ppnd16(p,ifault) | |
| Constructing wrapper function "calerf"... | |
| calerf(arg,result,jint) | |
| Creating wrapper for Fortran function "derf"("derf")... | |
| Constructing wrapper function "derf"... | |
| derf = derf(x) | |
| Creating wrapper for Fortran function "derfc"("derfc")... | |
| Constructing wrapper function "derfc"... | |
| derfc = derfc(x) | |
| Creating wrapper for Fortran function "derfcx"("derfcx")... | |
| Constructing wrapper function "derfcx"... | |
| derfcx = derfcx(x) | |
| Constructing wrapper function "matinput"... | |
| matinput(uid,matout,rowused,colused,r15,[rowmax,colmax]) | |
| Constructing wrapper function "vecinput"... | |
| vecinput(uid,vecout,vecused,r15,[vecmax]) | |
| Constructing wrapper function "oneparse"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '(*)' | |
| oneparse(instring,delimit,tokens,tokcnt,r15,[maxtok]) | |
| Constructing wrapper function "gibbmain"... | |
| nmin,kthin,nburn,nprec,kmind = gibbmain(original,q,r,s,epsilon) | |
| Creating wrapper for Fortran function "empquant"("empquant")... | |
| Constructing wrapper function "empquant"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '*' | |
| empquant = empquant(data,q,work,[iteracnt]) | |
| Constructing wrapper function "dichot"... | |
| dichot(data,cutpt,zt,[iteracnt]) | |
| Constructing wrapper function "thin"... | |
| thin(series,kthin,result,thincnt,[iteracnt]) | |
| Constructing wrapper function "mctest"... | |
| mctest(data,g2,bic,[datacnt]) | |
| Constructing wrapper function "indtest"... | |
| indtest(data,g2,bic,[datacnt]) | |
| Constructing wrapper function "mcest"... | |
| mcest(data,alpha,beta,[datacnt]) | |
| Creating wrapper for Fortran function "ppnd7"("ppnd7")... | |
| Constructing wrapper function "ppnd7"... | |
| ppnd7 = ppnd7(p,ifault) | |
| Constructing wrapper function "ssort"... | |
| ssort(x,y,kflag,[n]) | |
| Constructing COMMON block support for "unif_seeds"... | |
| s1,s2 | |
| Wrote C/API module "flib" to file "build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c" | |
| Fortran 77 wrappers are saved to "build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/linalg_utils.f' (format:fix,strict) | |
| Reading file 'pymc/blas_wrap.f' (format:fix,strict) | |
| Post-processing... | |
| Block: linalg_utils | |
| Block: remove_duplicates | |
| Block: check_repeats | |
| Block: diag_call | |
| Block: cov_fun | |
| {'attrspec': ['intent(hide)']} | |
| In: :linalg_utils:pymc/gp/linalg_utils.f:basis_diag_call | |
| vars2fortran: No typespec for argument "nbas". | |
| Block: basis_diag_call | |
| Block: gp_array_logp | |
| Block: asqs | |
| {'attrspec': ['intent(hide)']} | |
| In: :linalg_utils:pymc/blas_wrap.f:dcopy_wrap | |
| vars2fortran: No typespec for argument "nx". | |
| Block: dcopy_wrap | |
| Block: dtrmm_wrap | |
| Block: dtrsm_wrap | |
| Block: dpotrf_wrap | |
| Block: dchdc_wrap | |
| Block: dpotrs_wrap | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Constructing call-back function "cb_cov_fun_in_diag_call__user__routines" | |
| def cov_fun(xe): return q | |
| Building module "linalg_utils"... | |
| Constructing wrapper function "remove_duplicates"... | |
| nr,rf,rt,nu,xu,ui = remove_duplicates(x) | |
| Constructing wrapper function "check_repeats"... | |
| f,new_indices,n_new_indices = check_repeats(x,x_sofar,f_sofar) | |
| Constructing wrapper function "diag_call"... | |
| v = diag_call(x,cov_fun,[cov_fun_extra_args]) | |
| Constructing wrapper function "basis_diag_call"... | |
| v = basis_diag_call(basis_x) | |
| Constructing wrapper function "gp_array_logp"... | |
| like = gp_array_logp(x,mu,sig,[overwrite_x,overwrite_mu]) | |
| Constructing wrapper function "asqs"... | |
| asqs(c,s,[cmin,cmax]) | |
| Constructing wrapper function "dcopy_wrap"... | |
| dcopy_wrap(x,y) | |
| Constructing wrapper function "dtrmm_wrap"... | |
| dtrmm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dtrsm_wrap"... | |
| dtrsm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dpotrf_wrap"... | |
| info = dpotrf_wrap(a) | |
| Constructing wrapper function "dchdc_wrap"... | |
| piv,info = dchdc_wrap(a) | |
| Constructing wrapper function "dpotrs_wrap"... | |
| info = dpotrs_wrap(chol_fac,b,[uplo]) | |
| Wrote C/API module "linalg_utils" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/incomplete_chol.f' (format:fix,strict) | |
| Post-processing... | |
| Block: incomplete_chol | |
| Block: ichol_continue | |
| Block: rowfun | |
| Block: ichol | |
| Block: rowfun | |
| {'attrspec': ['intent(hide)']} | |
| In: :incomplete_chol:pymc/gp/incomplete_chol.f:ichol_basis | |
| vars2fortran: No typespec for argument "n_nug". | |
| Block: ichol_basis | |
| Block: ichol_full | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Constructing call-back function "cb_rowfun_in_ichol_continue__user__routines" | |
| def rowfun(itot,x,rowvec): return | |
| Constructing call-back function "cb_rowfun_in_ichol__user__routines" | |
| def rowfun(i,x,rowvec): return | |
| Building module "incomplete_chol"... | |
| Constructing wrapper function "ichol_continue"... | |
| m,piv = ichol_continue(sig,diag,piv,reltol,x,rowfun,mold,[overwrite_x,rowfun_extra_args]) | |
| Constructing wrapper function "ichol"... | |
| sig,m,piv = ichol(diag,reltol,x,rowfun,rl,[overwrite_x,rowfun_extra_args]) | |
| Constructing wrapper function "ichol_basis"... | |
| sig,p,m = ichol_basis(basis,nug,reltol) | |
| Constructing wrapper function "ichol_full"... | |
| sig,m,p = ichol_full(c,reltol) | |
| Wrote C/API module "incomplete_chol" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/cov_funs/isotropic_cov_funs.f' (format:fix,strict) | |
| Reading file 'blas/BLAS/dscal.f' (format:fix,strict) | |
| Post-processing... | |
| Block: isotropic_cov_funs | |
| Block: imul | |
| Block: symmetrize | |
| Block: matern | |
| Block: nsmatrn | |
| Block: stein_spatiotemporal | |
| Block: nsst | |
| Block: gaussian | |
| Block: exponential | |
| Block: brownian | |
| Block: frac_brownian | |
| Block: pow_exp | |
| Block: sphere | |
| Block: quadratic | |
| Block: dgamma | |
| Block: rkbesl | |
| Block: dscal | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "isotropic_cov_funs"... | |
| Constructing wrapper function "imul"... | |
| imul(c,a,[cmin,cmax,symm]) | |
| Constructing wrapper function "symmetrize"... | |
| symmetrize(c,[cmin,cmax]) | |
| Constructing wrapper function "matern"... | |
| matern(c,diff_degree,[cmin,cmax,symm]) | |
| Constructing wrapper function "nsmatrn"... | |
| nsmatrn(c,ddx,ddy,hx,hy,nmax,[cmin,cmax,symm]) | |
| Constructing wrapper function "stein_spatiotemporal"... | |
| stein_spatiotemporal(c,gt,origin_val,[cmin,cmax,symm]) | |
| Constructing wrapper function "nsst"... | |
| nsst(c,gt,origin_val,hx,hy,[cmin,cmax,symm]) | |
| Constructing wrapper function "gaussian"... | |
| gaussian(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "exponential"... | |
| exponential(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "brownian"... | |
| brownian(c,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "frac_brownian"... | |
| frac_brownian(c,x,y,h,[cmin,cmax,symm]) | |
| Constructing wrapper function "pow_exp"... | |
| pow_exp(c,pow,[cmin,cmax,symm]) | |
| Constructing wrapper function "sphere"... | |
| sphere(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "quadratic"... | |
| quadratic(c,phi,[cmin,cmax,symm]) | |
| Creating wrapper for Fortran function "dgamma"("dgamma")... | |
| Constructing wrapper function "dgamma"... | |
| dgamma = dgamma(x) | |
| Constructing wrapper function "rkbesl"... | |
| bk = rkbesl(x,alpha,nb,ize,ncalc) | |
| Constructing wrapper function "dscal"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '*' | |
| dscal(n,da,dx,incx) | |
| Wrote C/API module "isotropic_cov_funs" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c" | |
| Fortran 77 wrappers are saved to "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/cov_funs/distances.f' (format:fix,strict) | |
| Post-processing... | |
| Block: distances | |
| Block: euclidean | |
| Block: geographic | |
| Block: paniso_geo_rad | |
| Block: aniso_geo_rad | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "distances"... | |
| Constructing wrapper function "euclidean"... | |
| euclidean(d,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "geographic"... | |
| geographic(d,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "paniso_geo_rad"... | |
| paniso_geo_rad(d,x,y,ctrs,scals,[cmin,cmax,symm]) | |
| Constructing wrapper function "aniso_geo_rad"... | |
| aniso_geo_rad(d,x,y,inc,ecc,[cmin,cmax,symm]) | |
| Wrote C/API module "distances" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| warning: no files found matching 'README.txt' | |
| warning: no files found matching 'INSTALL.txt' | |
| warning: no files found matching 'docs/UserGuide.pdf' | |
| Installing collected packages: pymc | |
| Running setup.py install for pymc | |
| unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
| unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| customize UnixCCompiler | |
| customize UnixCCompiler using build_ext | |
| customize Gnu95FCompiler | |
| Found executable /usr/local/bin/gfortran | |
| customize Gnu95FCompiler | |
| customize Gnu95FCompiler using build_ext | |
| building 'pymc.flib' extension | |
| compiling C sources | |
| C compiler: clang -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/opt/zlib/include | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| extra options: '-msse3' | |
| clang: build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:18: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16817:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds] | |
| d = shape(x,2); | |
| ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:86:24: note: expanded from macro 'shape' | |
| #define shape(var,dim) var ## _Dims[dim] | |
| ^ | |
| <scratch space>:394:1: note: expanded from here | |
| x_Dims | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16718:3: note: array 'x_Dims' declared here | |
| npy_intp x_Dims[2] = {-1, -1}; | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:181:12: warning: unused function 'f2py_size' [-Wunused-function] | |
| static int f2py_size(PyArrayObject* var, ...) | |
| ^ | |
| 3 warnings generated. | |
| clang: build/src.macosx-10.9-x86_64-2.7/fortranobject.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.c:2: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] | |
| if ((fp->defs[i].func==NULL)) { | |
| ~~~~~~~~~~~~~~~~^~~~~~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: remove extraneous parentheses around the comparison to silence this warning | |
| if ((fp->defs[i].func==NULL)) { | |
| ~ ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: use '=' to turn this equality comparison into an assignment | |
| if ((fp->defs[i].func==NULL)) { | |
| ^~ | |
| = | |
| 2 warnings generated. | |
| clang: cephes/chbevl.c | |
| clang: cephes/i0.c | |
| clang: cephes/c2f.c | |
| compiling Fortran sources | |
| Fortran f77 compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran f90 compiler: /usr/local/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran fix compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| gfortran:f77: pymc/flib.f | |
| Warning: Nonconforming tab character in column 1 of line 509 | |
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| Warning: Nonconforming tab character in column 1 of line 4642 | |
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| pymc/flib.f:316.55: | |
| DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like | |
| 1 | |
| Warning: Unused variable 'd_now' declared at (1) | |
| pymc/flib.f:314.42: | |
| INTEGER i, nx, nalph, nmu, ntau, tnx | |
| 1 | |
| Warning: Unused variable 'tnx' declared at (1) | |
| pymc/flib.f:442.71: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'gradxlike' at (1) | |
| pymc/flib.f:461.40: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'high' declared at (1) | |
| pymc/flib.f:458.36: | |
| INTEGER n, nlower, nupper, i | |
| 1 | |
| Warning: Unused variable 'i' declared at (1) | |
| pymc/flib.f:461.29: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'like' declared at (1) | |
| pymc/flib.f:461.34: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'low' declared at (1) | |
| pymc/flib.f:442.39: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'lower' at (1) | |
| pymc/flib.f:442.45: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'upper' at (1) | |
| pymc/flib.f:442.33: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'x' at (1) | |
| pymc/flib.f:692.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:760.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:834.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:906.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:976.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:1186.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1185.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1185.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1300.55: | |
| DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf | |
| 1 | |
| Warning: Unused variable 'cdf' declared at (1) | |
| pymc/flib.f:1302.29: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1302.36: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'gammq' declared at (1) | |
| pymc/flib.f:1301.59: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumcdf' declared at (1) | |
| pymc/flib.f:1301.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1301.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1402.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2154.40: | |
| DOUBLE PRECISION gradlike(n), grad | |
| 1 | |
| Warning: Unused variable 'grad' declared at (1) | |
| pymc/flib.f:2665.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2728.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2793.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2903.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2959.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3021.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3396.58: | |
| DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike | |
| 1 | |
| Warning: Unused variable 'glike' declared at (1) | |
| pymc/flib.f:3646.37: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3646.29: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3706.37: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3706.29: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3836.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:4039.26: | |
| DOUBLE PRECISION psi | |
| 1 | |
| Warning: Unused variable 'psi' declared at (1) | |
| pymc/flib.f:4266.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:4332.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:5184.35: | |
| DOUBLE PRECISION like, factln, infinity, sump | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:5186.23: | |
| INTEGER i,j,n_tmp | |
| 1 | |
| Warning: Unused variable 'n_tmp' declared at (1) | |
| pymc/flib.f:5434.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5488.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5481.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5535.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5528.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f: In function 'elgs': | |
| pymc/flib.f:4882:0: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| K = I | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gl': | |
| pymc/flib.f:778:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gs': | |
| pymc/flib.f:994:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| gfortran:f77: pymc/histogram.f | |
| gfortran:f77: pymc/flib_blas.f | |
| pymc/flib_blas.f:202.25: | |
| DOUBLE PRECISION PI | |
| 1 | |
| Warning: Unused variable 'pi' declared at (1) | |
| gfortran:f77: pymc/blas_wrap.f | |
| gfortran:f77: pymc/math.f | |
| pymc/math.f:396.6: | |
| DOUBLE PRECISION FUNCTION DERF(X) | |
| 1 | |
| Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| pymc/math.f:417.6: | |
| DOUBLE PRECISION FUNCTION DERFC(X) | |
| 1 | |
| Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| gfortran:f77: pymc/gibbsit.f | |
| pymc/gibbsit.f:2160.5: | |
| 215 IF (R .GT. .5898437) GO TO 220 | |
| 1 | |
| Warning: Label 215 at (1) defined but not used | |
| pymc/gibbsit.f:2077.5: | |
| 115 IF (R .GT. .5898437) GO TO 120 | |
| 1 | |
| Warning: Label 115 at (1) defined but not used | |
| pymc/gibbsit.f:2064.5: | |
| 15 IF (KFLAG.GE.1) GO TO 30 | |
| 1 | |
| Warning: Label 15 at (1) defined but not used | |
| pymc/gibbsit.f:1204.48: | |
| cutpt = empquant(original,iteracnt,qhat,work) | |
| 1 | |
| Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) | |
| gfortran:f77: build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f | |
| /usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| error: Command "/usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate" failed with exit status 1 | |
| Complete output from command /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import setuptools;__file__='/private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-WOmYgV-record/install-record.txt --single-version-externally-managed: | |
| running install | |
| running build | |
| running config_cc | |
| unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
| running config_fc | |
| unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
| running build_src | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| running build_py | |
| creating build/lib.macosx-10.9-x86_64-2.7 | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/calc_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CircularStochastic.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CommonDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/datatypes.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/decorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/diagnostics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/InstantiationDecorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Matplot.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Node.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NormalApproximation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NumpyDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/progressbar.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/PyMCObjects.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/ScipyDistributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/six.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/StepMethods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/threadpool.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/base.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5ea.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/no_trace.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/pickle.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/ram.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/sqlite.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/txt.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/custom_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_gof.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_linear.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_null.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/gelman_bioassay.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma_data.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/weibull_fit.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/zip.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/covparams.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mesh_choice.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/PyMCmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/realizations.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/objectmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_adaptive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_AM.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_binary_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_convergence.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_database.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_GP_MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_gradients.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_instantiation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_interactive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_MCMCSampler.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_norm_approx.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_special_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/BasisCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Covariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/FullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gp_submodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gpplots.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/GPutils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/step_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/bases.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/brownian.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/cov_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/nsmatern.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| running build_ext | |
| customize UnixCCompiler | |
| customize UnixCCompiler using build_ext | |
| customize Gnu95FCompiler | |
| Found executable /usr/local/bin/gfortran | |
| customize Gnu95FCompiler | |
| customize Gnu95FCompiler using build_ext | |
| building 'pymc.flib' extension | |
| compiling C sources | |
| C compiler: clang -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/opt/zlib/include | |
| creating build/temp.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/cephes | |
| creating build/temp.macosx-10.9-x86_64-2.7/build | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| extra options: '-msse3' | |
| clang: build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:18: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16817:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds] | |
| d = shape(x,2); | |
| ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:86:24: note: expanded from macro 'shape' | |
| #define shape(var,dim) var ## _Dims[dim] | |
| ^ | |
| <scratch space>:394:1: note: expanded from here | |
| x_Dims | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16718:3: note: array 'x_Dims' declared here | |
| npy_intp x_Dims[2] = {-1, -1}; | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:181:12: warning: unused function 'f2py_size' [-Wunused-function] | |
| static int f2py_size(PyArrayObject* var, ...) | |
| ^ | |
| 3 warnings generated. | |
| clang: build/src.macosx-10.9-x86_64-2.7/fortranobject.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.c:2: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] | |
| if ((fp->defs[i].func==NULL)) { | |
| ~~~~~~~~~~~~~~~~^~~~~~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: remove extraneous parentheses around the comparison to silence this warning | |
| if ((fp->defs[i].func==NULL)) { | |
| ~ ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: use '=' to turn this equality comparison into an assignment | |
| if ((fp->defs[i].func==NULL)) { | |
| ^~ | |
| = | |
| 2 warnings generated. | |
| clang: cephes/chbevl.c | |
| clang: cephes/i0.c | |
| clang: cephes/c2f.c | |
| compiling Fortran sources | |
| Fortran f77 compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran f90 compiler: /usr/local/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran fix compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| creating build/temp.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| gfortran:f77: pymc/flib.f | |
| Warning: Nonconforming tab character in column 1 of line 509 | |
| Warning: Nonconforming tab character in column 1 of line 510 | |
| Warning: Nonconforming tab character in column 1 of line 511 | |
| Warning: Nonconforming tab character in column 1 of line 512 | |
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| Warning: Nonconforming tab character in column 6 of line 707 | |
| Warning: Nonconforming tab character in column 6 of line 711 | |
| Warning: Nonconforming tab character in column 6 of line 715 | |
| Warning: Nonconforming tab character in column 1 of line 723 | |
| Warning: Nonconforming tab character in column 6 of line 775 | |
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| Warning: Nonconforming tab character in column 1 of line 791 | |
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| Warning: Nonconforming tab character in column 1 of line 865 | |
| Warning: Nonconforming tab character in column 6 of line 921 | |
| Warning: Nonconforming tab character in column 6 of line 925 | |
| Warning: Nonconforming tab character in column 6 of line 929 | |
| Warning: Nonconforming tab character in column 1 of line 937 | |
| Warning: Nonconforming tab character in column 6 of line 991 | |
| Warning: Nonconforming tab character in column 6 of line 995 | |
| Warning: Nonconforming tab character in column 6 of line 999 | |
| Warning: Nonconforming tab character in column 1 of line 1007 | |
| Warning: Nonconforming tab character in column 1 of line 1195 | |
| Warning: Nonconforming tab character in column 1 of line 1196 | |
| Warning: Nonconforming tab character in column 1 of line 1197 | |
| Warning: Nonconforming tab character in column 1 of line 1200 | |
| Warning: Nonconforming tab character in column 1 of line 1201 | |
| Warning: Nonconforming tab character in column 1 of line 1408 | |
| Warning: Nonconforming tab character in column 1 of line 1409 | |
| Warning: Nonconforming tab character in column 1 of line 1412 | |
| Warning: Nonconforming tab character in column 5 of line 1420 | |
| Warning: Nonconforming tab character in column 5 of line 1421 | |
| Warning: Nonconforming tab character in column 5 of line 1422 | |
| Warning: Nonconforming tab character in column 5 of line 1423 | |
| Warning: Nonconforming tab character in column 5 of line 1424 | |
| Warning: Nonconforming tab character in column 5 of line 1425 | |
| Warning: Nonconforming tab character in column 1 of line 1452 | |
| Warning: Nonconforming tab character in column 1 of line 1454 | |
| Warning: Nonconforming tab character in column 1 of line 1457 | |
| Warning: Nonconforming tab character in column 5 of line 1465 | |
| Warning: Nonconforming tab character in column 5 of line 1466 | |
| Warning: Nonconforming tab character in column 5 of line 1467 | |
| Warning: Nonconforming tab character in column 5 of line 1469 | |
| Warning: Nonconforming tab character in column 5 of line 1470 | |
| Warning: Nonconforming tab character in column 5 of line 1471 | |
| Warning: Nonconforming tab character in column 5 of line 1472 | |
| Warning: Nonconforming tab character in column 5 of line 1473 | |
| Warning: Nonconforming tab character in column 1 of line 1478 | |
| Warning: Nonconforming tab character in column 1 of line 1499 | |
| Warning: Nonconforming tab character in column 1 of line 1501 | |
| Warning: Nonconforming tab character in column 1 of line 1504 | |
| Warning: Nonconforming tab character in column 5 of line 1512 | |
| Warning: Nonconforming tab character in column 5 of line 1513 | |
| Warning: Nonconforming tab character in column 5 of line 1514 | |
| Warning: Nonconforming tab character in column 5 of line 1515 | |
| Warning: Nonconforming tab character in column 5 of line 1516 | |
| Warning: Nonconforming tab character in column 5 of line 1517 | |
| Warning: Nonconforming tab character in column 1 of line 1740 | |
| Warning: Nonconforming tab character in column 1 of line 1743 | |
| Warning: Nonconforming tab character in column 1 of line 1746 | |
| Warning: Nonconforming tab character in column 1 of line 1755 | |
| Warning: Nonconforming tab character in column 1 of line 1783 | |
| Warning: Nonconforming tab character in column 1 of line 1786 | |
| Warning: Nonconforming tab character in column 1 of line 1789 | |
| Warning: Nonconforming tab character in column 1 of line 1798 | |
| Warning: Nonconforming tab character in column 1 of line 1800 | |
| Warning: Nonconforming tab character in column 1 of line 1832 | |
| Warning: Nonconforming tab character in column 1 of line 1835 | |
| Warning: Nonconforming tab character in column 1 of line 1838 | |
| Warning: Nonconforming tab character in column 1 of line 1847 | |
| Warning: Nonconforming tab character in column 1 of line 1849 | |
| Warning: Nonconforming tab character in column 1 of line 1977 | |
| Warning: Nonconforming tab character in column 1 of line 1978 | |
| Warning: Nonconforming tab character in column 1 of line 2030 | |
| Warning: Nonconforming tab character in column 1 of line 2031 | |
| Warning: Nonconforming tab character in column 1 of line 2079 | |
| Warning: Nonconforming tab character in column 1 of line 2080 | |
| Warning: Nonconforming tab character in column 1 of line 2168 | |
| Warning: Nonconforming tab character in column 1 of line 2174 | |
| Warning: Nonconforming tab character in column 1 of line 2218 | |
| Warning: Nonconforming tab character in column 1 of line 2224 | |
| Warning: Nonconforming tab character in column 1 of line 2339 | |
| Warning: Nonconforming tab character in column 1 of line 2395 | |
| Warning: Nonconforming tab character in column 1 of line 2692 | |
| Warning: Nonconforming tab character in column 1 of line 2693 | |
| Warning: Nonconforming tab character in column 1 of line 2694 | |
| Warning: Nonconforming tab character in column 1 of line 2696 | |
| Warning: Nonconforming tab character in column 1 of line 2697 | |
| Warning: Nonconforming tab character in column 1 of line 2756 | |
| Warning: Nonconforming tab character in column 1 of line 2820 | |
| Warning: Nonconforming tab character in column 1 of line 2881 | |
| Warning: Nonconforming tab character in column 1 of line 3191 | |
| Warning: Nonconforming tab character in column 1 of line 3192 | |
| Warning: Nonconforming tab character in column 1 of line 3656 | |
| Warning: Nonconforming tab character in column 1 of line 3657 | |
| Warning: Nonconforming tab character in column 1 of line 3658 | |
| Warning: Nonconforming tab character in column 1 of line 3660 | |
| Warning: Nonconforming tab character in column 1 of line 3661 | |
| Warning: Nonconforming tab character in column 1 of line 3662 | |
| Warning: Nonconforming tab character in column 1 of line 3664 | |
| Warning: Nonconforming tab character in column 1 of line 3665 | |
| Warning: Nonconforming tab character in column 1 of line 3666 | |
| Warning: Nonconforming tab character in column 1 of line 3716 | |
| Warning: Nonconforming tab character in column 1 of line 3717 | |
| Warning: Nonconforming tab character in column 1 of line 3718 | |
| Warning: Nonconforming tab character in column 1 of line 3720 | |
| Warning: Nonconforming tab character in column 1 of line 3721 | |
| Warning: Nonconforming tab character in column 1 of line 3722 | |
| Warning: Nonconforming tab character in column 1 of line 3724 | |
| Warning: Nonconforming tab character in column 1 of line 3725 | |
| Warning: Nonconforming tab character in column 1 of line 3726 | |
| Warning: Nonconforming tab character in column 1 of line 3732 | |
| Warning: Nonconforming tab character in column 1 of line 3846 | |
| Warning: Nonconforming tab character in column 1 of line 3847 | |
| Warning: Nonconforming tab character in column 1 of line 3849 | |
| Warning: Nonconforming tab character in column 1 of line 3851 | |
| Warning: Nonconforming tab character in column 1 of line 3875 | |
| Warning: Nonconforming tab character in column 1 of line 3876 | |
| Warning: Nonconforming tab character in column 1 of line 3877 | |
| Warning: Nonconforming tab character in column 1 of line 3878 | |
| Warning: Nonconforming tab character in column 1 of line 4276 | |
| Warning: Nonconforming tab character in column 1 of line 4277 | |
| Warning: Nonconforming tab character in column 1 of line 4278 | |
| Warning: Nonconforming tab character in column 1 of line 4280 | |
| Warning: Nonconforming tab character in column 1 of line 4281 | |
| Warning: Nonconforming tab character in column 1 of line 4282 | |
| Warning: Nonconforming tab character in column 1 of line 4284 | |
| Warning: Nonconforming tab character in column 1 of line 4285 | |
| Warning: Nonconforming tab character in column 1 of line 4286 | |
| Warning: Nonconforming tab character in column 1 of line 4288 | |
| Warning: Nonconforming tab character in column 1 of line 4289 | |
| Warning: Nonconforming tab character in column 1 of line 4290 | |
| Warning: Nonconforming tab character in column 1 of line 4342 | |
| Warning: Nonconforming tab character in column 1 of line 4343 | |
| Warning: Nonconforming tab character in column 1 of line 4344 | |
| Warning: Nonconforming tab character in column 1 of line 4346 | |
| Warning: Nonconforming tab character in column 1 of line 4347 | |
| Warning: Nonconforming tab character in column 1 of line 4348 | |
| Warning: Nonconforming tab character in column 1 of line 4350 | |
| Warning: Nonconforming tab character in column 1 of line 4351 | |
| Warning: Nonconforming tab character in column 1 of line 4352 | |
| Warning: Nonconforming tab character in column 1 of line 4354 | |
| Warning: Nonconforming tab character in column 1 of line 4355 | |
| Warning: Nonconforming tab character in column 1 of line 4356 | |
| Warning: Nonconforming tab character in column 1 of line 4620 | |
| Warning: Nonconforming tab character in column 1 of line 4622 | |
| Warning: Nonconforming tab character in column 1 of line 4623 | |
| Warning: Nonconforming tab character in column 1 of line 4624 | |
| Warning: Nonconforming tab character in column 1 of line 4626 | |
| Warning: Nonconforming tab character in column 1 of line 4628 | |
| Warning: Nonconforming tab character in column 1 of line 4630 | |
| Warning: Nonconforming tab character in column 1 of line 4632 | |
| Warning: Nonconforming tab character in column 1 of line 4633 | |
| Warning: Nonconforming tab character in column 1 of line 4634 | |
| Warning: Nonconforming tab character in column 1 of line 4635 | |
| Warning: Nonconforming tab character in column 1 of line 4637 | |
| Warning: Nonconforming tab character in column 1 of line 4638 | |
| Warning: Nonconforming tab character in column 1 of line 4639 | |
| Warning: Nonconforming tab character in column 1 of line 4640 | |
| Warning: Nonconforming tab character in column 1 of line 4642 | |
| Warning: Nonconforming tab character in column 1 of line 4643 | |
| Warning: Nonconforming tab character in column 1 of line 4644 | |
| Warning: Nonconforming tab character in column 1 of line 4645 | |
| Warning: Nonconforming tab character in column 1 of line 4646 | |
| pymc/flib.f:316.55: | |
| DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like | |
| 1 | |
| Warning: Unused variable 'd_now' declared at (1) | |
| pymc/flib.f:314.42: | |
| INTEGER i, nx, nalph, nmu, ntau, tnx | |
| 1 | |
| Warning: Unused variable 'tnx' declared at (1) | |
| pymc/flib.f:442.71: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'gradxlike' at (1) | |
| pymc/flib.f:461.40: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'high' declared at (1) | |
| pymc/flib.f:458.36: | |
| INTEGER n, nlower, nupper, i | |
| 1 | |
| Warning: Unused variable 'i' declared at (1) | |
| pymc/flib.f:461.29: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'like' declared at (1) | |
| pymc/flib.f:461.34: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'low' declared at (1) | |
| pymc/flib.f:442.39: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'lower' at (1) | |
| pymc/flib.f:442.45: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'upper' at (1) | |
| pymc/flib.f:442.33: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'x' at (1) | |
| pymc/flib.f:692.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:760.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:834.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:906.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:976.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:1186.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1185.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1185.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1300.55: | |
| DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf | |
| 1 | |
| Warning: Unused variable 'cdf' declared at (1) | |
| pymc/flib.f:1302.29: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1302.36: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'gammq' declared at (1) | |
| pymc/flib.f:1301.59: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumcdf' declared at (1) | |
| pymc/flib.f:1301.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1301.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1402.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2154.40: | |
| DOUBLE PRECISION gradlike(n), grad | |
| 1 | |
| Warning: Unused variable 'grad' declared at (1) | |
| pymc/flib.f:2665.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2728.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2793.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2903.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2959.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3021.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3396.58: | |
| DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike | |
| 1 | |
| Warning: Unused variable 'glike' declared at (1) | |
| pymc/flib.f:3646.37: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3646.29: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3706.37: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3706.29: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3836.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:4039.26: | |
| DOUBLE PRECISION psi | |
| 1 | |
| Warning: Unused variable 'psi' declared at (1) | |
| pymc/flib.f:4266.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:4332.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:5184.35: | |
| DOUBLE PRECISION like, factln, infinity, sump | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:5186.23: | |
| INTEGER i,j,n_tmp | |
| 1 | |
| Warning: Unused variable 'n_tmp' declared at (1) | |
| pymc/flib.f:5434.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5488.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5481.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5535.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5528.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f: In function 'elgs': | |
| pymc/flib.f:4882:0: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| K = I | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gl': | |
| pymc/flib.f:778:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gs': | |
| pymc/flib.f:994:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| gfortran:f77: pymc/histogram.f | |
| gfortran:f77: pymc/flib_blas.f | |
| pymc/flib_blas.f:202.25: | |
| DOUBLE PRECISION PI | |
| 1 | |
| Warning: Unused variable 'pi' declared at (1) | |
| gfortran:f77: pymc/blas_wrap.f | |
| gfortran:f77: pymc/math.f | |
| pymc/math.f:396.6: | |
| DOUBLE PRECISION FUNCTION DERF(X) | |
| 1 | |
| Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| pymc/math.f:417.6: | |
| DOUBLE PRECISION FUNCTION DERFC(X) | |
| 1 | |
| Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| gfortran:f77: pymc/gibbsit.f | |
| pymc/gibbsit.f:2160.5: | |
| 215 IF (R .GT. .5898437) GO TO 220 | |
| 1 | |
| Warning: Label 215 at (1) defined but not used | |
| pymc/gibbsit.f:2077.5: | |
| 115 IF (R .GT. .5898437) GO TO 120 | |
| 1 | |
| Warning: Label 115 at (1) defined but not used | |
| pymc/gibbsit.f:2064.5: | |
| 15 IF (KFLAG.GE.1) GO TO 30 | |
| 1 | |
| Warning: Label 15 at (1) defined but not used | |
| pymc/gibbsit.f:1204.48: | |
| cutpt = empquant(original,iteracnt,qhat,work) | |
| 1 | |
| Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) | |
| gfortran:f77: build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f | |
| /usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| error: Command "/usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate" failed with exit status 1 | |
| ---------------------------------------- | |
| Cleaning up... | |
| Command /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import setuptools;__file__='/private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-WOmYgV-record/install-record.txt --single-version-externally-managed failed with error code 1 in /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc | |
| Storing complete log in /Users/olga/.pip/pip.log | |
| scrm-bio-228-232-2:workspace-git olga$ which gxx | |
| scrm-bio-228-232-2:workspace-git olga$ which gcc | |
| /usr/bin/gcc | |
| scrm-bio-228-232-2:workspace-git olga$ which gfortran | |
| /usr/local/bin/gfortran | |
| scrm-bio-228-232-2:workspace-git olga$ gfortran --version | |
| GNU Fortran (GCC) 4.8.2 | |
| Copyright (C) 2013 Free Software Foundation, Inc. | |
| GNU Fortran comes with NO WARRANTY, to the extent permitted by law. | |
| You may redistribute copies of GNU Fortran | |
| under the terms of the GNU General Public License. | |
| For more information about these matters, see the file named COPYING | |
| scrm-bio-228-232-2:workspace-git olga$ pip install pymc | |
| Downloading/unpacking pymc | |
| Downloading pymc-2.3.tar.gz (13.1MB): 13.1MB downloaded | |
| Running setup.py egg_info for package pymc | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| IOError: [Errno 2] No such file or directory: 'skip:ppnd7'. Skipping file "skip:ppnd7". | |
| updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(na)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(nb)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension (nmu)' to 'dimension(nmu)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension (na)' to 'dimension(na)'. Ignoring. | |
| rmbadname1: Replacing "index" with "index_bn". | |
| updatevars: "character curterms(20)*24" is mapped to "character curterms(20,24)" | |
| updatevars: "character septerms(20)*24" is mapped to "character septerms(20,24)" | |
| updatevars: "character tokens(maxtok)*(*)" is mapped to "character tokens(maxtok,(*))" | |
| rmbadname1: Replacing "index" with "index_bn". | |
| rmbadname1: Replacing "len" with "len_bn". | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between x, nx | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between w, x, nx | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between n, nx, bin0, delta, x, d | |
| "object of type 'builtin_function_or_method' has no len()" in evaluating 'len(ord)' (available names: []) | |
| Reading fortran codes... | |
| Reading file 'pymc/flib.f' (format:fix,strict) | |
| Reading file 'pymc/histogram.f' (format:fix,strict) | |
| Reading file 'pymc/flib_blas.f' (format:fix,strict) | |
| Reading file 'pymc/blas_wrap.f' (format:fix,strict) | |
| Reading file 'pymc/math.f' (format:fix,strict) | |
| Reading file 'pymc/gibbsit.f' (format:fix,strict) | |
| Line #1125 in pymc/gibbsit.f:" DOUBLE PRECISION INTENT(CACHE,HIDE), DIMENSION(2*ITERACNT) :: WORK" | |
| updatevars: attempt to change the type of "work" ("integer") to "double precision". Ignoring. | |
| Post-processing... | |
| Block: flib | |
| Block: symmetrize | |
| Block: logsum | |
| Block: logsum_cpx | |
| Block: combinationln | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/flib.f:expand_triangular | |
| vars2fortran: No typespec for argument "nf". | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/flib.f:expand_triangular | |
| vars2fortran: No typespec for argument "n". | |
| Block: expand_triangular | |
| Block: mod_to_circle | |
| Block: standardize | |
| Block: gammln | |
| Block: mvgammln | |
| Block: factrl | |
| Block: factln | |
| Block: normcdf | |
| Block: sn_like | |
| Block: rskewnorm | |
| Block: uniform_like | |
| Block: uniform_grad_x | |
| Block: uniform_grad_l | |
| Block: uniform_grad_u | |
| Block: duniform_like | |
| Block: exponweib | |
| Block: exponweib_gx | |
| Block: exponweib_gl | |
| Block: exponweib_gk | |
| Block: exponweib_ga | |
| Block: exponweib_gs | |
| Block: exponweib_ppf | |
| Block: constrain | |
| Block: poisson | |
| Block: poisson_gmu | |
| Block: trpoisson | |
| Block: trpoisson_gmu | |
| Block: t | |
| Block: t_grad_x | |
| Block: t_grad_nu | |
| Block: chi2_grad_nu | |
| Block: nct | |
| Block: multinomial | |
| Block: weibull | |
| Block: weibull_gx | |
| Block: weibull_ga | |
| Block: weibull_gb | |
| Block: logistic | |
| Block: normal | |
| Block: normal_grad_tau | |
| Block: normal_grad_x | |
| Block: normal_grad_mu | |
| Block: hnormal | |
| Block: hnormal_gradx | |
| Block: hnormal_gradtau | |
| Block: lognormal | |
| Block: lognormal_gradx | |
| Block: lognormal_gradmu | |
| Block: lognormal_gradtau | |
| Block: arlognormal | |
| Block: gev | |
| Block: gev_ppf | |
| Block: gamma | |
| Block: gamma_grad_x | |
| Block: gamma_grad_alpha | |
| Block: gamma_grad_beta | |
| Block: igamma | |
| Block: igamma_grad_x | |
| Block: igamma_grad_alpha | |
| Block: igamma_grad_beta | |
| Block: hyperg | |
| Block: geometric | |
| Block: geometric_gp | |
| Block: dirichlet | |
| Block: cauchy | |
| Block: cauchy_grad_x | |
| Block: cauchy_grad_a | |
| Block: cauchy_grad_b | |
| Block: negbin | |
| Block: negbin2 | |
| Block: negbin2_gmu | |
| Block: negbin2_ga | |
| Block: binomial | |
| Block: binomial_gp | |
| Block: bernoulli | |
| Block: bern_grad_p | |
| Block: beta_like | |
| Block: beta_grad_x | |
| Block: beta_grad_a | |
| Block: beta_grad_b | |
| Block: betabin_like | |
| Block: betabin_ga | |
| Block: betabin_gb | |
| Block: mvhyperg | |
| Block: dirmultinom | |
| Block: wishart | |
| Block: trace | |
| Block: gamfun | |
| Block: gammds | |
| Block: psi | |
| Block: gser | |
| Block: gcf | |
| Block: gammq | |
| Block: trans | |
| Block: matmult | |
| Block: dtrm | |
| Block: elgs | |
| Block: bico | |
| Block: chol | |
| Block: hermpoly | |
| Block: set_uniform | |
| Block: categorical | |
| Block: rcat | |
| Block: logit | |
| Block: invlogit | |
| Block: stukel_logit | |
| Block: stukel_invlogit | |
| Block: vonmises | |
| Block: pareto | |
| Block: truncated_pareto | |
| Block: fixed_binsize | |
| Block: weighted_fixed_binsize | |
| Block: fixed_binsize_nd | |
| {'attrspec': ['dimension(n)']} | |
| In: :flib:pymc/histogram.f:qsorti | |
| vars2fortran: No typespec for argument "ord". | |
| Block: qsorti | |
| Block: checksymm | |
| Block: chol_mvnorm | |
| Block: cov_mvnorm | |
| Block: prec_mvnorm | |
| Block: blas_wishart | |
| Block: blas_wishart_cov | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/blas_wrap.f:dcopy_wrap | |
| vars2fortran: No typespec for argument "nx". | |
| Block: dcopy_wrap | |
| Block: dtrmm_wrap | |
| Block: dtrsm_wrap | |
| Block: dpotrf_wrap | |
| Block: dchdc_wrap | |
| Block: dpotrs_wrap | |
| Block: ppnd16 | |
| Block: calerf | |
| Block: derf | |
| Block: derfc | |
| Block: derfcx | |
| Block: gibbsit | |
| Block: matinput | |
| Block: vecinput | |
| Block: oneparse | |
| Block: gibbmain | |
| Block: empquant | |
| Block: dichot | |
| Block: thin | |
| Block: mctest | |
| Block: indtest | |
| Block: mcest | |
| Block: ppnd7 | |
| Block: ssort | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "flib"... | |
| Constructing wrapper function "symmetrize"... | |
| symmetrize(c,[cmin,cmax]) | |
| Constructing wrapper function "logsum"... | |
| s = logsum(x) | |
| Constructing wrapper function "logsum_cpx"... | |
| s = logsum_cpx(x) | |
| Creating wrapper for Fortran function "combinationln"("combinationln")... | |
| Constructing wrapper function "combinationln"... | |
| combinationln = combinationln(n,k) | |
| Constructing wrapper function "expand_triangular"... | |
| t = expand_triangular(d,f) | |
| Constructing wrapper function "mod_to_circle"... | |
| mx = mod_to_circle(x,u,l) | |
| Constructing wrapper function "standardize"... | |
| z = standardize(x,loc,scale) | |
| Creating wrapper for Fortran function "gammln"("gammln")... | |
| Constructing wrapper function "gammln"... | |
| gammln = gammln(xx) | |
| Creating wrapper for Fortran function "mvgammln"("mvgammln")... | |
| Constructing wrapper function "mvgammln"... | |
| mvgammln = mvgammln(x,k) | |
| Creating wrapper for Fortran function "factrl"("factrl")... | |
| Constructing wrapper function "factrl"... | |
| factrl = factrl(n) | |
| Creating wrapper for Fortran function "factln"("factln")... | |
| Constructing wrapper function "factln"... | |
| factln = factln(n) | |
| Constructing wrapper function "normcdf"... | |
| normcdf(x) | |
| Constructing wrapper function "sn_like"... | |
| like = sn_like(x,mu,tau,alph) | |
| Constructing wrapper function "rskewnorm"... | |
| x = rskewnorm(nx,mu,tau,alph,rn) | |
| Constructing wrapper function "uniform_like"... | |
| like = uniform_like(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_x"... | |
| gradxlike = uniform_grad_x(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_l"... | |
| gradllike = uniform_grad_l(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_u"... | |
| gradulike = uniform_grad_u(x,lower,upper) | |
| Constructing wrapper function "duniform_like"... | |
| like = duniform_like(x,lower,upper) | |
| Constructing wrapper function "exponweib"... | |
| like = exponweib(x,a,c,loc,scale) | |
| Constructing wrapper function "exponweib_gx"... | |
| gradlike = exponweib_gx(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_gl"... | |
| gradlike = exponweib_gl(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_gk"... | |
| gradlike = exponweib_gk(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_ga"... | |
| gradlike = exponweib_ga(x,alpha,k,loc,scale,[nk]) | |
| Constructing wrapper function "exponweib_gs"... | |
| gradlike = exponweib_gs(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_ppf"... | |
| ppf = exponweib_ppf(q,a,c) | |
| Constructing wrapper function "constrain"... | |
| pass = constrain(x,a,b,allow_equal) | |
| Constructing wrapper function "poisson"... | |
| like = poisson(x,mu) | |
| Constructing wrapper function "poisson_gmu"... | |
| gradlike = poisson_gmu(x,mu) | |
| Constructing wrapper function "trpoisson"... | |
| like = trpoisson(x,mu,k) | |
| Constructing wrapper function "trpoisson_gmu"... | |
| gradlike = trpoisson_gmu(x,mu,k) | |
| Constructing wrapper function "t"... | |
| like = t(x,nu) | |
| Constructing wrapper function "t_grad_x"... | |
| gradlikex = t_grad_x(x,nu) | |
| Constructing wrapper function "t_grad_nu"... | |
| gradlikenu = t_grad_nu(x,nu) | |
| Constructing wrapper function "chi2_grad_nu"... | |
| gradlikenu = chi2_grad_nu(x,nu) | |
| Constructing wrapper function "nct"... | |
| like = nct(x,mu,lam,nu) | |
| Constructing wrapper function "multinomial"... | |
| like = multinomial(x,n,p) | |
| Constructing wrapper function "weibull"... | |
| like = weibull(x,alpha,beta) | |
| Constructing wrapper function "weibull_gx"... | |
| gradlike = weibull_gx(x,alpha,beta) | |
| Constructing wrapper function "weibull_ga"... | |
| gradlike = weibull_ga(x,alpha,beta) | |
| Constructing wrapper function "weibull_gb"... | |
| gradlike = weibull_gb(x,alpha,beta) | |
| Constructing wrapper function "logistic"... | |
| like = logistic(x,mu,tau) | |
| Constructing wrapper function "normal"... | |
| like = normal(x,mu,tau) | |
| Constructing wrapper function "normal_grad_tau"... | |
| grad_tau_like = normal_grad_tau(x,mu,tau) | |
| Constructing wrapper function "normal_grad_x"... | |
| grad_x_like = normal_grad_x(x,mu,tau) | |
| Constructing wrapper function "normal_grad_mu"... | |
| gradmulike = normal_grad_mu(x,mu,tau) | |
| Constructing wrapper function "hnormal"... | |
| like = hnormal(x,tau) | |
| Constructing wrapper function "hnormal_gradx"... | |
| gradlike = hnormal_gradx(x,tau) | |
| Constructing wrapper function "hnormal_gradtau"... | |
| gradlike = hnormal_gradtau(x,tau) | |
| Constructing wrapper function "lognormal"... | |
| like = lognormal(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradx"... | |
| gradlike = lognormal_gradx(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradmu"... | |
| gradlike = lognormal_gradmu(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradtau"... | |
| gradlike = lognormal_gradtau(x,mu,tau) | |
| Constructing wrapper function "arlognormal"... | |
| like = arlognormal(x,mu,sigma,rho,beta) | |
| Constructing wrapper function "gev"... | |
| like = gev(x,xi,mu,sigma) | |
| Constructing wrapper function "gev_ppf"... | |
| ppf = gev_ppf(q,xi) | |
| Constructing wrapper function "gamma"... | |
| like = gamma(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_x"... | |
| gradxlike = gamma_grad_x(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_alpha"... | |
| gradalphalike = gamma_grad_alpha(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_beta"... | |
| gradbetalike = gamma_grad_beta(x,alpha,beta) | |
| Constructing wrapper function "igamma"... | |
| like = igamma(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_x"... | |
| gradxlike = igamma_grad_x(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_alpha"... | |
| gradalphalike = igamma_grad_alpha(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_beta"... | |
| gradbetalike = igamma_grad_beta(x,alpha,beta) | |
| Constructing wrapper function "hyperg"... | |
| like = hyperg(x,draws,success,total) | |
| Constructing wrapper function "geometric"... | |
| like = geometric(x,p) | |
| Constructing wrapper function "geometric_gp"... | |
| gradlike = geometric_gp(x,p) | |
| Constructing wrapper function "dirichlet"... | |
| like = dirichlet(x,theta) | |
| Constructing wrapper function "cauchy"... | |
| like = cauchy(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_x"... | |
| gradlike = cauchy_grad_x(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_a"... | |
| gradlike = cauchy_grad_a(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_b"... | |
| gradlike = cauchy_grad_b(x,alpha,beta) | |
| Constructing wrapper function "negbin"... | |
| like = negbin(x,r,p) | |
| Constructing wrapper function "negbin2"... | |
| like = negbin2(x,mu,a) | |
| Constructing wrapper function "negbin2_gmu"... | |
| gradlike = negbin2_gmu(x,mu,alpha) | |
| Constructing wrapper function "negbin2_ga"... | |
| gradlike = negbin2_ga(x,mu,alpha) | |
| Constructing wrapper function "binomial"... | |
| like = binomial(x,n,p) | |
| Constructing wrapper function "binomial_gp"... | |
| gradlike = binomial_gp(x,n,p) | |
| Constructing wrapper function "bernoulli"... | |
| like = bernoulli(x,p) | |
| Constructing wrapper function "bern_grad_p"... | |
| grad_like = bern_grad_p(x,p) | |
| Constructing wrapper function "beta_like"... | |
| like = beta_like(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_x"... | |
| gradlikex = beta_grad_x(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_a"... | |
| gradlikea = beta_grad_a(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_b"... | |
| gradlikeb = beta_grad_b(x,alpha,beta) | |
| Constructing wrapper function "betabin_like"... | |
| like = betabin_like(x,alpha,beta,n) | |
| Constructing wrapper function "betabin_ga"... | |
| gradlike = betabin_ga(x,alpha,beta,n) | |
| Constructing wrapper function "betabin_gb"... | |
| gradlike = betabin_gb(x,alpha,beta,n) | |
| Constructing wrapper function "mvhyperg"... | |
| like = mvhyperg(x,color) | |
| Constructing wrapper function "dirmultinom"... | |
| like = dirmultinom(x,theta) | |
| Constructing wrapper function "wishart"... | |
| like = wishart(x,n,sigma) | |
| Constructing wrapper function "trace"... | |
| trace(mat,tr,[k]) | |
| Constructing wrapper function "gamfun"... | |
| gx = gamfun(xx) | |
| Creating wrapper for Fortran function "gammds"("gammds")... | |
| Constructing wrapper function "gammds"... | |
| gammds = gammds(y,p,ifault) | |
| Creating wrapper for Fortran function "psi"("psi")... | |
| Constructing wrapper function "psi"... | |
| psi = psi(x) | |
| Constructing wrapper function "gser"... | |
| gser(gamser,a,x,gln) | |
| Constructing wrapper function "gcf"... | |
| gcf(gammcf,a,x,gln) | |
| Creating wrapper for Fortran function "gammq"("gammq")... | |
| Constructing wrapper function "gammq"... | |
| gammq = gammq(a,x) | |
| Constructing wrapper function "trans"... | |
| tmat = trans(mat) | |
| Constructing wrapper function "matmult"... | |
| prod = matmult(mat1,mat2) | |
| Constructing wrapper function "dtrm"... | |
| d = dtrm(a) | |
| Constructing wrapper function "elgs"... | |
| elgs(a,indx,[n]) | |
| Creating wrapper for Fortran function "bico"("bico")... | |
| Constructing wrapper function "bico"... | |
| bico = bico(n,k) | |
| Constructing wrapper function "chol"... | |
| c = chol(a,[n]) | |
| Constructing wrapper function "hermpoly"... | |
| cx = hermpoly(n,x) | |
| Constructing wrapper function "set_uniform"... | |
| set_uniform(seed1,seed2) | |
| Constructing wrapper function "categorical"... | |
| like = categorical(x,p) | |
| Constructing wrapper function "rcat"... | |
| s = rcat(p,rands) | |
| Constructing wrapper function "logit"... | |
| ltheta = logit(theta) | |
| Constructing wrapper function "invlogit"... | |
| theta = invlogit(ltheta) | |
| Constructing wrapper function "stukel_logit"... | |
| ltheta = stukel_logit(theta,a1,a2,[overwrite_theta]) | |
| Constructing wrapper function "stukel_invlogit"... | |
| theta = stukel_invlogit(ltheta,a1,a2,[overwrite_ltheta]) | |
| Constructing wrapper function "vonmises"... | |
| like = vonmises(x,mu,kappa) | |
| Constructing wrapper function "pareto"... | |
| like = pareto(x,alpha,m) | |
| Constructing wrapper function "truncated_pareto"... | |
| like = truncated_pareto(x,alpha,m,b) | |
| Constructing wrapper function "fixed_binsize"... | |
| h = fixed_binsize(x,bin0,delta,n) | |
| Constructing wrapper function "weighted_fixed_binsize"... | |
| h = weighted_fixed_binsize(x,w,bin0,delta,n) | |
| Constructing wrapper function "fixed_binsize_nd"... | |
| count = fixed_binsize_nd(x,bin0,delta,n,nc) | |
| Constructing wrapper function "qsorti"... | |
| qsorti(ord,a,[n]) | |
| Constructing wrapper function "checksymm"... | |
| cs = checksymm(x) | |
| Constructing wrapper function "chol_mvnorm"... | |
| like = chol_mvnorm(x,mu,sig,[overwrite_x,overwrite_mu]) | |
| Constructing wrapper function "cov_mvnorm"... | |
| like = cov_mvnorm(x,mu,c,[overwrite_x,overwrite_mu,overwrite_c]) | |
| Constructing wrapper function "prec_mvnorm"... | |
| like = prec_mvnorm(x,mu,tau,[overwrite_x,overwrite_mu,overwrite_tau]) | |
| Constructing wrapper function "blas_wishart"... | |
| like = blas_wishart(x,n,t,[overwrite_x,overwrite_t]) | |
| Constructing wrapper function "blas_wishart_cov"... | |
| like = blas_wishart_cov(x,n,v,[overwrite_x,overwrite_v]) | |
| Constructing wrapper function "dcopy_wrap"... | |
| dcopy_wrap(x,y) | |
| Constructing wrapper function "dtrmm_wrap"... | |
| dtrmm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dtrsm_wrap"... | |
| dtrsm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dpotrf_wrap"... | |
| info = dpotrf_wrap(a) | |
| Constructing wrapper function "dchdc_wrap"... | |
| piv,info = dchdc_wrap(a) | |
| Constructing wrapper function "dpotrs_wrap"... | |
| info = dpotrs_wrap(chol_fac,b,[uplo]) | |
| Creating wrapper for Fortran function "ppnd16"("ppnd16")... | |
| Constructing wrapper function "ppnd16"... | |
| ppnd16 = ppnd16(p,ifault) | |
| Constructing wrapper function "calerf"... | |
| calerf(arg,result,jint) | |
| Creating wrapper for Fortran function "derf"("derf")... | |
| Constructing wrapper function "derf"... | |
| derf = derf(x) | |
| Creating wrapper for Fortran function "derfc"("derfc")... | |
| Constructing wrapper function "derfc"... | |
| derfc = derfc(x) | |
| Creating wrapper for Fortran function "derfcx"("derfcx")... | |
| Constructing wrapper function "derfcx"... | |
| derfcx = derfcx(x) | |
| Constructing wrapper function "matinput"... | |
| matinput(uid,matout,rowused,colused,r15,[rowmax,colmax]) | |
| Constructing wrapper function "vecinput"... | |
| vecinput(uid,vecout,vecused,r15,[vecmax]) | |
| Constructing wrapper function "oneparse"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '(*)' | |
| oneparse(instring,delimit,tokens,tokcnt,r15,[maxtok]) | |
| Constructing wrapper function "gibbmain"... | |
| nmin,kthin,nburn,nprec,kmind = gibbmain(original,q,r,s,epsilon) | |
| Creating wrapper for Fortran function "empquant"("empquant")... | |
| Constructing wrapper function "empquant"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '*' | |
| empquant = empquant(data,q,work,[iteracnt]) | |
| Constructing wrapper function "dichot"... | |
| dichot(data,cutpt,zt,[iteracnt]) | |
| Constructing wrapper function "thin"... | |
| thin(series,kthin,result,thincnt,[iteracnt]) | |
| Constructing wrapper function "mctest"... | |
| mctest(data,g2,bic,[datacnt]) | |
| Constructing wrapper function "indtest"... | |
| indtest(data,g2,bic,[datacnt]) | |
| Constructing wrapper function "mcest"... | |
| mcest(data,alpha,beta,[datacnt]) | |
| Creating wrapper for Fortran function "ppnd7"("ppnd7")... | |
| Constructing wrapper function "ppnd7"... | |
| ppnd7 = ppnd7(p,ifault) | |
| Constructing wrapper function "ssort"... | |
| ssort(x,y,kflag,[n]) | |
| Constructing COMMON block support for "unif_seeds"... | |
| s1,s2 | |
| Wrote C/API module "flib" to file "build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c" | |
| Fortran 77 wrappers are saved to "build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/linalg_utils.f' (format:fix,strict) | |
| Reading file 'pymc/blas_wrap.f' (format:fix,strict) | |
| Post-processing... | |
| Block: linalg_utils | |
| Block: remove_duplicates | |
| Block: check_repeats | |
| Block: diag_call | |
| Block: cov_fun | |
| {'attrspec': ['intent(hide)']} | |
| In: :linalg_utils:pymc/gp/linalg_utils.f:basis_diag_call | |
| vars2fortran: No typespec for argument "nbas". | |
| Block: basis_diag_call | |
| Block: gp_array_logp | |
| Block: asqs | |
| {'attrspec': ['intent(hide)']} | |
| In: :linalg_utils:pymc/blas_wrap.f:dcopy_wrap | |
| vars2fortran: No typespec for argument "nx". | |
| Block: dcopy_wrap | |
| Block: dtrmm_wrap | |
| Block: dtrsm_wrap | |
| Block: dpotrf_wrap | |
| Block: dchdc_wrap | |
| Block: dpotrs_wrap | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Constructing call-back function "cb_cov_fun_in_diag_call__user__routines" | |
| def cov_fun(xe): return q | |
| Building module "linalg_utils"... | |
| Constructing wrapper function "remove_duplicates"... | |
| nr,rf,rt,nu,xu,ui = remove_duplicates(x) | |
| Constructing wrapper function "check_repeats"... | |
| f,new_indices,n_new_indices = check_repeats(x,x_sofar,f_sofar) | |
| Constructing wrapper function "diag_call"... | |
| v = diag_call(x,cov_fun,[cov_fun_extra_args]) | |
| Constructing wrapper function "basis_diag_call"... | |
| v = basis_diag_call(basis_x) | |
| Constructing wrapper function "gp_array_logp"... | |
| like = gp_array_logp(x,mu,sig,[overwrite_x,overwrite_mu]) | |
| Constructing wrapper function "asqs"... | |
| asqs(c,s,[cmin,cmax]) | |
| Constructing wrapper function "dcopy_wrap"... | |
| dcopy_wrap(x,y) | |
| Constructing wrapper function "dtrmm_wrap"... | |
| dtrmm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dtrsm_wrap"... | |
| dtrsm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dpotrf_wrap"... | |
| info = dpotrf_wrap(a) | |
| Constructing wrapper function "dchdc_wrap"... | |
| piv,info = dchdc_wrap(a) | |
| Constructing wrapper function "dpotrs_wrap"... | |
| info = dpotrs_wrap(chol_fac,b,[uplo]) | |
| Wrote C/API module "linalg_utils" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/incomplete_chol.f' (format:fix,strict) | |
| Post-processing... | |
| Block: incomplete_chol | |
| Block: ichol_continue | |
| Block: rowfun | |
| Block: ichol | |
| Block: rowfun | |
| {'attrspec': ['intent(hide)']} | |
| In: :incomplete_chol:pymc/gp/incomplete_chol.f:ichol_basis | |
| vars2fortran: No typespec for argument "n_nug". | |
| Block: ichol_basis | |
| Block: ichol_full | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Constructing call-back function "cb_rowfun_in_ichol_continue__user__routines" | |
| def rowfun(itot,x,rowvec): return | |
| Constructing call-back function "cb_rowfun_in_ichol__user__routines" | |
| def rowfun(i,x,rowvec): return | |
| Building module "incomplete_chol"... | |
| Constructing wrapper function "ichol_continue"... | |
| m,piv = ichol_continue(sig,diag,piv,reltol,x,rowfun,mold,[overwrite_x,rowfun_extra_args]) | |
| Constructing wrapper function "ichol"... | |
| sig,m,piv = ichol(diag,reltol,x,rowfun,rl,[overwrite_x,rowfun_extra_args]) | |
| Constructing wrapper function "ichol_basis"... | |
| sig,p,m = ichol_basis(basis,nug,reltol) | |
| Constructing wrapper function "ichol_full"... | |
| sig,m,p = ichol_full(c,reltol) | |
| Wrote C/API module "incomplete_chol" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/cov_funs/isotropic_cov_funs.f' (format:fix,strict) | |
| Reading file 'blas/BLAS/dscal.f' (format:fix,strict) | |
| Post-processing... | |
| Block: isotropic_cov_funs | |
| Block: imul | |
| Block: symmetrize | |
| Block: matern | |
| Block: nsmatrn | |
| Block: stein_spatiotemporal | |
| Block: nsst | |
| Block: gaussian | |
| Block: exponential | |
| Block: brownian | |
| Block: frac_brownian | |
| Block: pow_exp | |
| Block: sphere | |
| Block: quadratic | |
| Block: dgamma | |
| Block: rkbesl | |
| Block: dscal | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "isotropic_cov_funs"... | |
| Constructing wrapper function "imul"... | |
| imul(c,a,[cmin,cmax,symm]) | |
| Constructing wrapper function "symmetrize"... | |
| symmetrize(c,[cmin,cmax]) | |
| Constructing wrapper function "matern"... | |
| matern(c,diff_degree,[cmin,cmax,symm]) | |
| Constructing wrapper function "nsmatrn"... | |
| nsmatrn(c,ddx,ddy,hx,hy,nmax,[cmin,cmax,symm]) | |
| Constructing wrapper function "stein_spatiotemporal"... | |
| stein_spatiotemporal(c,gt,origin_val,[cmin,cmax,symm]) | |
| Constructing wrapper function "nsst"... | |
| nsst(c,gt,origin_val,hx,hy,[cmin,cmax,symm]) | |
| Constructing wrapper function "gaussian"... | |
| gaussian(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "exponential"... | |
| exponential(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "brownian"... | |
| brownian(c,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "frac_brownian"... | |
| frac_brownian(c,x,y,h,[cmin,cmax,symm]) | |
| Constructing wrapper function "pow_exp"... | |
| pow_exp(c,pow,[cmin,cmax,symm]) | |
| Constructing wrapper function "sphere"... | |
| sphere(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "quadratic"... | |
| quadratic(c,phi,[cmin,cmax,symm]) | |
| Creating wrapper for Fortran function "dgamma"("dgamma")... | |
| Constructing wrapper function "dgamma"... | |
| dgamma = dgamma(x) | |
| Constructing wrapper function "rkbesl"... | |
| bk = rkbesl(x,alpha,nb,ize,ncalc) | |
| Constructing wrapper function "dscal"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '*' | |
| dscal(n,da,dx,incx) | |
| Wrote C/API module "isotropic_cov_funs" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c" | |
| Fortran 77 wrappers are saved to "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/cov_funs/distances.f' (format:fix,strict) | |
| Post-processing... | |
| Block: distances | |
| Block: euclidean | |
| Block: geographic | |
| Block: paniso_geo_rad | |
| Block: aniso_geo_rad | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "distances"... | |
| Constructing wrapper function "euclidean"... | |
| euclidean(d,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "geographic"... | |
| geographic(d,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "paniso_geo_rad"... | |
| paniso_geo_rad(d,x,y,ctrs,scals,[cmin,cmax,symm]) | |
| Constructing wrapper function "aniso_geo_rad"... | |
| aniso_geo_rad(d,x,y,inc,ecc,[cmin,cmax,symm]) | |
| Wrote C/API module "distances" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| warning: no files found matching 'README.txt' | |
| warning: no files found matching 'INSTALL.txt' | |
| warning: no files found matching 'docs/UserGuide.pdf' | |
| Installing collected packages: pymc | |
| Running setup.py install for pymc | |
| unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
| unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| customize UnixCCompiler | |
| customize UnixCCompiler using build_ext | |
| customize Gnu95FCompiler | |
| Found executable /usr/local/bin/gfortran | |
| customize Gnu95FCompiler | |
| customize Gnu95FCompiler using build_ext | |
| building 'pymc.flib' extension | |
| compiling C sources | |
| C compiler: clang -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/opt/zlib/include | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| extra options: '-msse3' | |
| clang: build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:18: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16817:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds] | |
| d = shape(x,2); | |
| ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:86:24: note: expanded from macro 'shape' | |
| #define shape(var,dim) var ## _Dims[dim] | |
| ^ | |
| <scratch space>:394:1: note: expanded from here | |
| x_Dims | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16718:3: note: array 'x_Dims' declared here | |
| npy_intp x_Dims[2] = {-1, -1}; | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:181:12: warning: unused function 'f2py_size' [-Wunused-function] | |
| static int f2py_size(PyArrayObject* var, ...) | |
| ^ | |
| 3 warnings generated. | |
| clang: build/src.macosx-10.9-x86_64-2.7/fortranobject.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.c:2: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] | |
| if ((fp->defs[i].func==NULL)) { | |
| ~~~~~~~~~~~~~~~~^~~~~~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: remove extraneous parentheses around the comparison to silence this warning | |
| if ((fp->defs[i].func==NULL)) { | |
| ~ ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: use '=' to turn this equality comparison into an assignment | |
| if ((fp->defs[i].func==NULL)) { | |
| ^~ | |
| = | |
| 2 warnings generated. | |
| clang: cephes/chbevl.c | |
| clang: cephes/i0.c | |
| clang: cephes/c2f.c | |
| compiling Fortran sources | |
| Fortran f77 compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran f90 compiler: /usr/local/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran fix compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| gfortran:f77: pymc/flib.f | |
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| Warning: Nonconforming tab character in column 1 of line 4351 | |
| Warning: Nonconforming tab character in column 1 of line 4352 | |
| Warning: Nonconforming tab character in column 1 of line 4354 | |
| Warning: Nonconforming tab character in column 1 of line 4355 | |
| Warning: Nonconforming tab character in column 1 of line 4356 | |
| Warning: Nonconforming tab character in column 1 of line 4620 | |
| Warning: Nonconforming tab character in column 1 of line 4622 | |
| Warning: Nonconforming tab character in column 1 of line 4623 | |
| Warning: Nonconforming tab character in column 1 of line 4624 | |
| Warning: Nonconforming tab character in column 1 of line 4626 | |
| Warning: Nonconforming tab character in column 1 of line 4628 | |
| Warning: Nonconforming tab character in column 1 of line 4630 | |
| Warning: Nonconforming tab character in column 1 of line 4632 | |
| Warning: Nonconforming tab character in column 1 of line 4633 | |
| Warning: Nonconforming tab character in column 1 of line 4634 | |
| Warning: Nonconforming tab character in column 1 of line 4635 | |
| Warning: Nonconforming tab character in column 1 of line 4637 | |
| Warning: Nonconforming tab character in column 1 of line 4638 | |
| Warning: Nonconforming tab character in column 1 of line 4639 | |
| Warning: Nonconforming tab character in column 1 of line 4640 | |
| Warning: Nonconforming tab character in column 1 of line 4642 | |
| Warning: Nonconforming tab character in column 1 of line 4643 | |
| Warning: Nonconforming tab character in column 1 of line 4644 | |
| Warning: Nonconforming tab character in column 1 of line 4645 | |
| Warning: Nonconforming tab character in column 1 of line 4646 | |
| pymc/flib.f:316.55: | |
| DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like | |
| 1 | |
| Warning: Unused variable 'd_now' declared at (1) | |
| pymc/flib.f:314.42: | |
| INTEGER i, nx, nalph, nmu, ntau, tnx | |
| 1 | |
| Warning: Unused variable 'tnx' declared at (1) | |
| pymc/flib.f:442.71: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'gradxlike' at (1) | |
| pymc/flib.f:461.40: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'high' declared at (1) | |
| pymc/flib.f:458.36: | |
| INTEGER n, nlower, nupper, i | |
| 1 | |
| Warning: Unused variable 'i' declared at (1) | |
| pymc/flib.f:461.29: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'like' declared at (1) | |
| pymc/flib.f:461.34: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'low' declared at (1) | |
| pymc/flib.f:442.39: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'lower' at (1) | |
| pymc/flib.f:442.45: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'upper' at (1) | |
| pymc/flib.f:442.33: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'x' at (1) | |
| pymc/flib.f:692.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:760.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:834.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:906.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:976.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:1186.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1185.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1185.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1300.55: | |
| DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf | |
| 1 | |
| Warning: Unused variable 'cdf' declared at (1) | |
| pymc/flib.f:1302.29: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1302.36: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'gammq' declared at (1) | |
| pymc/flib.f:1301.59: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumcdf' declared at (1) | |
| pymc/flib.f:1301.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1301.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1402.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2154.40: | |
| DOUBLE PRECISION gradlike(n), grad | |
| 1 | |
| Warning: Unused variable 'grad' declared at (1) | |
| pymc/flib.f:2665.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2728.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2793.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2903.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2959.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3021.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3396.58: | |
| DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike | |
| 1 | |
| Warning: Unused variable 'glike' declared at (1) | |
| pymc/flib.f:3646.37: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3646.29: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3706.37: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3706.29: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3836.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:4039.26: | |
| DOUBLE PRECISION psi | |
| 1 | |
| Warning: Unused variable 'psi' declared at (1) | |
| pymc/flib.f:4266.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:4332.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:5184.35: | |
| DOUBLE PRECISION like, factln, infinity, sump | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:5186.23: | |
| INTEGER i,j,n_tmp | |
| 1 | |
| Warning: Unused variable 'n_tmp' declared at (1) | |
| pymc/flib.f:5434.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5488.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5481.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5535.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5528.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f: In function 'elgs': | |
| pymc/flib.f:4882:0: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| K = I | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gl': | |
| pymc/flib.f:778:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gs': | |
| pymc/flib.f:994:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| gfortran:f77: pymc/histogram.f | |
| gfortran:f77: pymc/flib_blas.f | |
| pymc/flib_blas.f:202.25: | |
| DOUBLE PRECISION PI | |
| 1 | |
| Warning: Unused variable 'pi' declared at (1) | |
| gfortran:f77: pymc/blas_wrap.f | |
| gfortran:f77: pymc/math.f | |
| pymc/math.f:396.6: | |
| DOUBLE PRECISION FUNCTION DERF(X) | |
| 1 | |
| Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| pymc/math.f:417.6: | |
| DOUBLE PRECISION FUNCTION DERFC(X) | |
| 1 | |
| Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| gfortran:f77: pymc/gibbsit.f | |
| pymc/gibbsit.f:2160.5: | |
| 215 IF (R .GT. .5898437) GO TO 220 | |
| 1 | |
| Warning: Label 215 at (1) defined but not used | |
| pymc/gibbsit.f:2077.5: | |
| 115 IF (R .GT. .5898437) GO TO 120 | |
| 1 | |
| Warning: Label 115 at (1) defined but not used | |
| pymc/gibbsit.f:2064.5: | |
| 15 IF (KFLAG.GE.1) GO TO 30 | |
| 1 | |
| Warning: Label 15 at (1) defined but not used | |
| pymc/gibbsit.f:1204.48: | |
| cutpt = empquant(original,iteracnt,qhat,work) | |
| 1 | |
| Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) | |
| gfortran:f77: build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f | |
| /usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| error: Command "/usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate" failed with exit status 1 | |
| Complete output from command /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import setuptools;__file__='/private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-Oiaad0-record/install-record.txt --single-version-externally-managed: | |
| running install | |
| running build | |
| running config_cc | |
| unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
| running config_fc | |
| unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
| running build_src | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| running build_py | |
| creating build/lib.macosx-10.9-x86_64-2.7 | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/calc_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CircularStochastic.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CommonDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/datatypes.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/decorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/diagnostics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/InstantiationDecorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Matplot.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Node.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NormalApproximation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NumpyDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/progressbar.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/PyMCObjects.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/ScipyDistributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/six.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/StepMethods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/threadpool.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/base.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5ea.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/no_trace.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/pickle.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/ram.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/sqlite.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/txt.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/custom_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_gof.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_linear.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_null.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/gelman_bioassay.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma_data.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/weibull_fit.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/zip.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/covparams.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mesh_choice.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/PyMCmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/realizations.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/objectmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_adaptive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_AM.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_binary_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_convergence.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_database.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_GP_MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_gradients.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_instantiation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_interactive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_MCMCSampler.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_norm_approx.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_special_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/BasisCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Covariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/FullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gp_submodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gpplots.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/GPutils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/step_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/bases.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/brownian.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/cov_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/nsmatern.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| running build_ext | |
| customize UnixCCompiler | |
| customize UnixCCompiler using build_ext | |
| customize Gnu95FCompiler | |
| Found executable /usr/local/bin/gfortran | |
| customize Gnu95FCompiler | |
| customize Gnu95FCompiler using build_ext | |
| building 'pymc.flib' extension | |
| compiling C sources | |
| C compiler: clang -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/opt/zlib/include | |
| creating build/temp.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/cephes | |
| creating build/temp.macosx-10.9-x86_64-2.7/build | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| extra options: '-msse3' | |
| clang: build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:18: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16817:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds] | |
| d = shape(x,2); | |
| ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:86:24: note: expanded from macro 'shape' | |
| #define shape(var,dim) var ## _Dims[dim] | |
| ^ | |
| <scratch space>:394:1: note: expanded from here | |
| x_Dims | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16718:3: note: array 'x_Dims' declared here | |
| npy_intp x_Dims[2] = {-1, -1}; | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:181:12: warning: unused function 'f2py_size' [-Wunused-function] | |
| static int f2py_size(PyArrayObject* var, ...) | |
| ^ | |
| 3 warnings generated. | |
| clang: build/src.macosx-10.9-x86_64-2.7/fortranobject.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.c:2: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] | |
| if ((fp->defs[i].func==NULL)) { | |
| ~~~~~~~~~~~~~~~~^~~~~~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: remove extraneous parentheses around the comparison to silence this warning | |
| if ((fp->defs[i].func==NULL)) { | |
| ~ ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: use '=' to turn this equality comparison into an assignment | |
| if ((fp->defs[i].func==NULL)) { | |
| ^~ | |
| = | |
| 2 warnings generated. | |
| clang: cephes/chbevl.c | |
| clang: cephes/i0.c | |
| clang: cephes/c2f.c | |
| compiling Fortran sources | |
| Fortran f77 compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran f90 compiler: /usr/local/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran fix compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| creating build/temp.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| gfortran:f77: pymc/flib.f | |
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| pymc/flib.f:316.55: | |
| DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like | |
| 1 | |
| Warning: Unused variable 'd_now' declared at (1) | |
| pymc/flib.f:314.42: | |
| INTEGER i, nx, nalph, nmu, ntau, tnx | |
| 1 | |
| Warning: Unused variable 'tnx' declared at (1) | |
| pymc/flib.f:442.71: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'gradxlike' at (1) | |
| pymc/flib.f:461.40: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'high' declared at (1) | |
| pymc/flib.f:458.36: | |
| INTEGER n, nlower, nupper, i | |
| 1 | |
| Warning: Unused variable 'i' declared at (1) | |
| pymc/flib.f:461.29: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'like' declared at (1) | |
| pymc/flib.f:461.34: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'low' declared at (1) | |
| pymc/flib.f:442.39: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'lower' at (1) | |
| pymc/flib.f:442.45: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'upper' at (1) | |
| pymc/flib.f:442.33: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'x' at (1) | |
| pymc/flib.f:692.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:760.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:834.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:906.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:976.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:1186.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1185.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1185.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1300.55: | |
| DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf | |
| 1 | |
| Warning: Unused variable 'cdf' declared at (1) | |
| pymc/flib.f:1302.29: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1302.36: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'gammq' declared at (1) | |
| pymc/flib.f:1301.59: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumcdf' declared at (1) | |
| pymc/flib.f:1301.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1301.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1402.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2154.40: | |
| DOUBLE PRECISION gradlike(n), grad | |
| 1 | |
| Warning: Unused variable 'grad' declared at (1) | |
| pymc/flib.f:2665.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2728.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2793.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2903.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2959.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3021.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3396.58: | |
| DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike | |
| 1 | |
| Warning: Unused variable 'glike' declared at (1) | |
| pymc/flib.f:3646.37: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3646.29: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3706.37: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3706.29: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3836.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:4039.26: | |
| DOUBLE PRECISION psi | |
| 1 | |
| Warning: Unused variable 'psi' declared at (1) | |
| pymc/flib.f:4266.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:4332.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:5184.35: | |
| DOUBLE PRECISION like, factln, infinity, sump | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:5186.23: | |
| INTEGER i,j,n_tmp | |
| 1 | |
| Warning: Unused variable 'n_tmp' declared at (1) | |
| pymc/flib.f:5434.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5488.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5481.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5535.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5528.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f: In function 'elgs': | |
| pymc/flib.f:4882:0: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| K = I | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gl': | |
| pymc/flib.f:778:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gs': | |
| pymc/flib.f:994:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| gfortran:f77: pymc/histogram.f | |
| gfortran:f77: pymc/flib_blas.f | |
| pymc/flib_blas.f:202.25: | |
| DOUBLE PRECISION PI | |
| 1 | |
| Warning: Unused variable 'pi' declared at (1) | |
| gfortran:f77: pymc/blas_wrap.f | |
| gfortran:f77: pymc/math.f | |
| pymc/math.f:396.6: | |
| DOUBLE PRECISION FUNCTION DERF(X) | |
| 1 | |
| Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| pymc/math.f:417.6: | |
| DOUBLE PRECISION FUNCTION DERFC(X) | |
| 1 | |
| Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| gfortran:f77: pymc/gibbsit.f | |
| pymc/gibbsit.f:2160.5: | |
| 215 IF (R .GT. .5898437) GO TO 220 | |
| 1 | |
| Warning: Label 215 at (1) defined but not used | |
| pymc/gibbsit.f:2077.5: | |
| 115 IF (R .GT. .5898437) GO TO 120 | |
| 1 | |
| Warning: Label 115 at (1) defined but not used | |
| pymc/gibbsit.f:2064.5: | |
| 15 IF (KFLAG.GE.1) GO TO 30 | |
| 1 | |
| Warning: Label 15 at (1) defined but not used | |
| pymc/gibbsit.f:1204.48: | |
| cutpt = empquant(original,iteracnt,qhat,work) | |
| 1 | |
| Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) | |
| gfortran:f77: build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f | |
| /usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| error: Command "/usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate" failed with exit status 1 | |
| ---------------------------------------- | |
| Cleaning up... | |
| Command /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import setuptools;__file__='/private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-Oiaad0-record/install-record.txt --single-version-externally-managed failed with error code 1 in /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc | |
| Storing complete log in /Users/olga/.pip/pip.log | |
| scrm-bio-228-232-2:workspace-git olga$ clear | |
| scrm-bio-228-232-2:workspace-git olga$ pip install -vvv pymc | |
| Downloading/unpacking pymc | |
| Getting page https://pypi.python.org/simple/pymc/ | |
| URLs to search for versions for pymc: | |
| * https://pypi.python.org/simple/pymc/ | |
| Analyzing links from page https://pypi.python.org/simple/pymc/ | |
| Skipping link https://pypi.python.org/packages/2.5/p/pymc/pymc-2.0-py2.5-macosx-10.3-i386.egg#md5=23886f86615004f777a0470c69edf265 (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.5/p/pymc/pymc-2.0.win32-py2.5.exe#md5=a96a9c90edd4848bffdff8a809b901e8 (from https://pypi.python.org/simple/pymc/); unknown archive format: .exe | |
| Skipping link https://pypi.python.org/packages/2.5/p/pymc/pymc-2.1beta.win32-py2.5.exe#md5=fdba7f86d41ab515f718b4a5889ed140 (from https://pypi.python.org/simple/pymc/); unknown archive format: .exe | |
| Skipping link https://pypi.python.org/packages/2.6/p/pymc/pymc-2.1beta-py2.6-macosx-10.6-universal.egg#md5=9c7513869c28d94fb618d8ef140a768e (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.6/p/pymc/pymc-2.1beta.win32-py2.6.exe#md5=50b8c75e52195bb174d9f75f4aa68d3e (from https://pypi.python.org/simple/pymc/); unknown archive format: .exe | |
| Skipping link https://pypi.python.org/packages/2.6/p/pymc/pymc-2.2-py2.6-linux-x86_64.egg#md5=a52da6da8002d6a65b845bad5da8f758 (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.7/p/pymc/pymc-2.2-py2.7-macosx-10.7-intel.egg#md5=057abfd3bafb37f95e4a899b186ea46b (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.7/p/pymc/pymc-2.2-py2.7-win32.egg#md5=789c865d6c05fa2bd523ca209894aa97 (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.7/p/pymc/pymc-2.2.win32-py2.7.exe#md5=d63c53afd042d080c773fe06a639b3ab (from https://pypi.python.org/simple/pymc/); unknown archive format: .exe | |
| Skipping link https://pypi.python.org/packages/2.7/p/pymc/pymc-2.3-py2.7-macosx-10.8-intel.egg#md5=fc827efb9be4b2d147eef6883a10bb47 (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.7/p/pymc/pymc-2.3.win32-py2.7.exe#md5=022cfb6e97a70dc6e92736407119f96c (from https://pypi.python.org/simple/pymc/); unknown archive format: .exe | |
| Found link https://pypi.python.org/packages/source/p/pymc/pymc-2.0.tar.gz#md5=ef673f20c89d845520516111c9c0db08 (from https://pypi.python.org/simple/pymc/), version: 2.0 | |
| Found link https://pypi.python.org/packages/source/p/pymc/pymc-2.1beta.zip#md5=265be6fe114f2d52359d59f2c8b912ff (from https://pypi.python.org/simple/pymc/), version: 2.1beta | |
| Found link https://pypi.python.org/packages/source/p/pymc/pymc-2.2.tar.gz#md5=f94439b23cbfaf89a1bafb97bfc71b85 (from https://pypi.python.org/simple/pymc/), version: 2.2 | |
| Found link https://pypi.python.org/packages/source/p/pymc/pymc-2.3.tar.gz#md5=03678068b552eecb16fc7aded39d125a (from https://pypi.python.org/simple/pymc/), version: 2.3 | |
| Ignoring link https://pypi.python.org/packages/source/p/pymc/pymc-2.1beta.zip#md5=265be6fe114f2d52359d59f2c8b912ff (from https://pypi.python.org/simple/pymc/), version 2.1beta is a pre-release (use --pre to allow). | |
| Using version 2.3 (newest of versions: 2.3, 2.2, 2.0) | |
| Downloading pymc-2.3.tar.gz (13.1MB): | |
| Downloading from URL https://pypi.python.org/packages/source/p/pymc/pymc-2.3.tar.gz#md5=03678068b552eecb16fc7aded39d125a (from https://pypi.python.org/simple/pymc/) | |
| ...Downloading pymc-2.3.tar.gz (13.1MB): 13.1MB downloaded | |
| Running setup.py egg_info for package pymc | |
| Running command python setup.py egg_info | |
| running egg_info | |
| running build_src | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| creating build | |
| creating build/src.macosx-10.9-x86_64-2.7 | |
| creating build/src.macosx-10.9-x86_64-2.7/pymc | |
| IOError: [Errno 2] No such file or directory: 'skip:ppnd7'. Skipping file "skip:ppnd7". | |
| updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(na)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(nb)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension (nmu)' to 'dimension(nmu)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension (na)' to 'dimension(na)'. Ignoring. | |
| rmbadname1: Replacing "index" with "index_bn". | |
| updatevars: "character curterms(20)*24" is mapped to "character curterms(20,24)" | |
| updatevars: "character septerms(20)*24" is mapped to "character septerms(20,24)" | |
| updatevars: "character tokens(maxtok)*(*)" is mapped to "character tokens(maxtok,(*))" | |
| rmbadname1: Replacing "index" with "index_bn". | |
| rmbadname1: Replacing "len" with "len_bn". | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between x, nx | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between w, x, nx | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between n, nx, bin0, delta, x, d | |
| "object of type 'builtin_function_or_method' has no len()" in evaluating 'len(ord)' (available names: []) | |
| Reading fortran codes... | |
| Reading file 'pymc/flib.f' (format:fix,strict) | |
| Reading file 'pymc/histogram.f' (format:fix,strict) | |
| Reading file 'pymc/flib_blas.f' (format:fix,strict) | |
| Reading file 'pymc/blas_wrap.f' (format:fix,strict) | |
| Reading file 'pymc/math.f' (format:fix,strict) | |
| Reading file 'pymc/gibbsit.f' (format:fix,strict) | |
| Line #1125 in pymc/gibbsit.f:" DOUBLE PRECISION INTENT(CACHE,HIDE), DIMENSION(2*ITERACNT) :: WORK" | |
| updatevars: attempt to change the type of "work" ("integer") to "double precision". Ignoring. | |
| Post-processing... | |
| Block: flib | |
| Block: symmetrize | |
| Block: logsum | |
| Block: logsum_cpx | |
| Block: combinationln | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/flib.f:expand_triangular | |
| vars2fortran: No typespec for argument "nf". | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/flib.f:expand_triangular | |
| vars2fortran: No typespec for argument "n". | |
| Block: expand_triangular | |
| Block: mod_to_circle | |
| Block: standardize | |
| Block: gammln | |
| Block: mvgammln | |
| Block: factrl | |
| Block: factln | |
| Block: normcdf | |
| Block: sn_like | |
| Block: rskewnorm | |
| Block: uniform_like | |
| Block: uniform_grad_x | |
| Block: uniform_grad_l | |
| Block: uniform_grad_u | |
| Block: duniform_like | |
| Block: exponweib | |
| Block: exponweib_gx | |
| Block: exponweib_gl | |
| Block: exponweib_gk | |
| Block: exponweib_ga | |
| Block: exponweib_gs | |
| Block: exponweib_ppf | |
| Block: constrain | |
| Block: poisson | |
| Block: poisson_gmu | |
| Block: trpoisson | |
| Block: trpoisson_gmu | |
| Block: t | |
| Block: t_grad_x | |
| Block: t_grad_nu | |
| Block: chi2_grad_nu | |
| Block: nct | |
| Block: multinomial | |
| Block: weibull | |
| Block: weibull_gx | |
| Block: weibull_ga | |
| Block: weibull_gb | |
| Block: logistic | |
| Block: normal | |
| Block: normal_grad_tau | |
| Block: normal_grad_x | |
| Block: normal_grad_mu | |
| Block: hnormal | |
| Block: hnormal_gradx | |
| Block: hnormal_gradtau | |
| Block: lognormal | |
| Block: lognormal_gradx | |
| Block: lognormal_gradmu | |
| Block: lognormal_gradtau | |
| Block: arlognormal | |
| Block: gev | |
| Block: gev_ppf | |
| Block: gamma | |
| Block: gamma_grad_x | |
| Block: gamma_grad_alpha | |
| Block: gamma_grad_beta | |
| Block: igamma | |
| Block: igamma_grad_x | |
| Block: igamma_grad_alpha | |
| Block: igamma_grad_beta | |
| Block: hyperg | |
| Block: geometric | |
| Block: geometric_gp | |
| Block: dirichlet | |
| Block: cauchy | |
| Block: cauchy_grad_x | |
| Block: cauchy_grad_a | |
| Block: cauchy_grad_b | |
| Block: negbin | |
| Block: negbin2 | |
| Block: negbin2_gmu | |
| Block: negbin2_ga | |
| Block: binomial | |
| Block: binomial_gp | |
| Block: bernoulli | |
| Block: bern_grad_p | |
| Block: beta_like | |
| Block: beta_grad_x | |
| Block: beta_grad_a | |
| Block: beta_grad_b | |
| Block: betabin_like | |
| Block: betabin_ga | |
| Block: betabin_gb | |
| Block: mvhyperg | |
| Block: dirmultinom | |
| Block: wishart | |
| Block: trace | |
| Block: gamfun | |
| Block: gammds | |
| Block: psi | |
| Block: gser | |
| Block: gcf | |
| Block: gammq | |
| Block: trans | |
| Block: matmult | |
| Block: dtrm | |
| Block: elgs | |
| Block: bico | |
| Block: chol | |
| Block: hermpoly | |
| Block: set_uniform | |
| Block: categorical | |
| Block: rcat | |
| Block: logit | |
| Block: invlogit | |
| Block: stukel_logit | |
| Block: stukel_invlogit | |
| Block: vonmises | |
| Block: pareto | |
| Block: truncated_pareto | |
| Block: fixed_binsize | |
| Block: weighted_fixed_binsize | |
| Block: fixed_binsize_nd | |
| {'attrspec': ['dimension(n)']} | |
| In: :flib:pymc/histogram.f:qsorti | |
| vars2fortran: No typespec for argument "ord". | |
| Block: qsorti | |
| Block: checksymm | |
| Block: chol_mvnorm | |
| Block: cov_mvnorm | |
| Block: prec_mvnorm | |
| Block: blas_wishart | |
| Block: blas_wishart_cov | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/blas_wrap.f:dcopy_wrap | |
| vars2fortran: No typespec for argument "nx". | |
| Block: dcopy_wrap | |
| Block: dtrmm_wrap | |
| Block: dtrsm_wrap | |
| Block: dpotrf_wrap | |
| Block: dchdc_wrap | |
| Block: dpotrs_wrap | |
| Block: ppnd16 | |
| Block: calerf | |
| Block: derf | |
| Block: derfc | |
| Block: derfcx | |
| Block: gibbsit | |
| Block: matinput | |
| Block: vecinput | |
| Block: oneparse | |
| Block: gibbmain | |
| Block: empquant | |
| Block: dichot | |
| Block: thin | |
| Block: mctest | |
| Block: indtest | |
| Block: mcest | |
| Block: ppnd7 | |
| Block: ssort | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "flib"... | |
| Constructing wrapper function "symmetrize"... | |
| symmetrize(c,[cmin,cmax]) | |
| Constructing wrapper function "logsum"... | |
| s = logsum(x) | |
| Constructing wrapper function "logsum_cpx"... | |
| s = logsum_cpx(x) | |
| Creating wrapper for Fortran function "combinationln"("combinationln")... | |
| Constructing wrapper function "combinationln"... | |
| combinationln = combinationln(n,k) | |
| Constructing wrapper function "expand_triangular"... | |
| t = expand_triangular(d,f) | |
| Constructing wrapper function "mod_to_circle"... | |
| mx = mod_to_circle(x,u,l) | |
| Constructing wrapper function "standardize"... | |
| z = standardize(x,loc,scale) | |
| Creating wrapper for Fortran function "gammln"("gammln")... | |
| Constructing wrapper function "gammln"... | |
| gammln = gammln(xx) | |
| Creating wrapper for Fortran function "mvgammln"("mvgammln")... | |
| Constructing wrapper function "mvgammln"... | |
| mvgammln = mvgammln(x,k) | |
| Creating wrapper for Fortran function "factrl"("factrl")... | |
| Constructing wrapper function "factrl"... | |
| factrl = factrl(n) | |
| Creating wrapper for Fortran function "factln"("factln")... | |
| Constructing wrapper function "factln"... | |
| factln = factln(n) | |
| Constructing wrapper function "normcdf"... | |
| normcdf(x) | |
| Constructing wrapper function "sn_like"... | |
| like = sn_like(x,mu,tau,alph) | |
| Constructing wrapper function "rskewnorm"... | |
| x = rskewnorm(nx,mu,tau,alph,rn) | |
| Constructing wrapper function "uniform_like"... | |
| like = uniform_like(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_x"... | |
| gradxlike = uniform_grad_x(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_l"... | |
| gradllike = uniform_grad_l(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_u"... | |
| gradulike = uniform_grad_u(x,lower,upper) | |
| Constructing wrapper function "duniform_like"... | |
| like = duniform_like(x,lower,upper) | |
| Constructing wrapper function "exponweib"... | |
| like = exponweib(x,a,c,loc,scale) | |
| Constructing wrapper function "exponweib_gx"... | |
| gradlike = exponweib_gx(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_gl"... | |
| gradlike = exponweib_gl(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_gk"... | |
| gradlike = exponweib_gk(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_ga"... | |
| gradlike = exponweib_ga(x,alpha,k,loc,scale,[nk]) | |
| Constructing wrapper function "exponweib_gs"... | |
| gradlike = exponweib_gs(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_ppf"... | |
| ppf = exponweib_ppf(q,a,c) | |
| Constructing wrapper function "constrain"... | |
| pass = constrain(x,a,b,allow_equal) | |
| Constructing wrapper function "poisson"... | |
| like = poisson(x,mu) | |
| Constructing wrapper function "poisson_gmu"... | |
| gradlike = poisson_gmu(x,mu) | |
| Constructing wrapper function "trpoisson"... | |
| like = trpoisson(x,mu,k) | |
| Constructing wrapper function "trpoisson_gmu"... | |
| gradlike = trpoisson_gmu(x,mu,k) | |
| Constructing wrapper function "t"... | |
| like = t(x,nu) | |
| Constructing wrapper function "t_grad_x"... | |
| gradlikex = t_grad_x(x,nu) | |
| Constructing wrapper function "t_grad_nu"... | |
| gradlikenu = t_grad_nu(x,nu) | |
| Constructing wrapper function "chi2_grad_nu"... | |
| gradlikenu = chi2_grad_nu(x,nu) | |
| Constructing wrapper function "nct"... | |
| like = nct(x,mu,lam,nu) | |
| Constructing wrapper function "multinomial"... | |
| like = multinomial(x,n,p) | |
| Constructing wrapper function "weibull"... | |
| like = weibull(x,alpha,beta) | |
| Constructing wrapper function "weibull_gx"... | |
| gradlike = weibull_gx(x,alpha,beta) | |
| Constructing wrapper function "weibull_ga"... | |
| gradlike = weibull_ga(x,alpha,beta) | |
| Constructing wrapper function "weibull_gb"... | |
| gradlike = weibull_gb(x,alpha,beta) | |
| Constructing wrapper function "logistic"... | |
| like = logistic(x,mu,tau) | |
| Constructing wrapper function "normal"... | |
| like = normal(x,mu,tau) | |
| Constructing wrapper function "normal_grad_tau"... | |
| grad_tau_like = normal_grad_tau(x,mu,tau) | |
| Constructing wrapper function "normal_grad_x"... | |
| grad_x_like = normal_grad_x(x,mu,tau) | |
| Constructing wrapper function "normal_grad_mu"... | |
| gradmulike = normal_grad_mu(x,mu,tau) | |
| Constructing wrapper function "hnormal"... | |
| like = hnormal(x,tau) | |
| Constructing wrapper function "hnormal_gradx"... | |
| gradlike = hnormal_gradx(x,tau) | |
| Constructing wrapper function "hnormal_gradtau"... | |
| gradlike = hnormal_gradtau(x,tau) | |
| Constructing wrapper function "lognormal"... | |
| like = lognormal(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradx"... | |
| gradlike = lognormal_gradx(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradmu"... | |
| gradlike = lognormal_gradmu(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradtau"... | |
| gradlike = lognormal_gradtau(x,mu,tau) | |
| Constructing wrapper function "arlognormal"... | |
| like = arlognormal(x,mu,sigma,rho,beta) | |
| Constructing wrapper function "gev"... | |
| like = gev(x,xi,mu,sigma) | |
| Constructing wrapper function "gev_ppf"... | |
| ppf = gev_ppf(q,xi) | |
| Constructing wrapper function "gamma"... | |
| like = gamma(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_x"... | |
| gradxlike = gamma_grad_x(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_alpha"... | |
| gradalphalike = gamma_grad_alpha(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_beta"... | |
| gradbetalike = gamma_grad_beta(x,alpha,beta) | |
| Constructing wrapper function "igamma"... | |
| like = igamma(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_x"... | |
| gradxlike = igamma_grad_x(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_alpha"... | |
| gradalphalike = igamma_grad_alpha(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_beta"... | |
| gradbetalike = igamma_grad_beta(x,alpha,beta) | |
| Constructing wrapper function "hyperg"... | |
| like = hyperg(x,draws,success,total) | |
| Constructing wrapper function "geometric"... | |
| like = geometric(x,p) | |
| Constructing wrapper function "geometric_gp"... | |
| gradlike = geometric_gp(x,p) | |
| Constructing wrapper function "dirichlet"... | |
| like = dirichlet(x,theta) | |
| Constructing wrapper function "cauchy"... | |
| like = cauchy(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_x"... | |
| gradlike = cauchy_grad_x(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_a"... | |
| gradlike = cauchy_grad_a(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_b"... | |
| gradlike = cauchy_grad_b(x,alpha,beta) | |
| Constructing wrapper function "negbin"... | |
| like = negbin(x,r,p) | |
| Constructing wrapper function "negbin2"... | |
| like = negbin2(x,mu,a) | |
| Constructing wrapper function "negbin2_gmu"... | |
| gradlike = negbin2_gmu(x,mu,alpha) | |
| Constructing wrapper function "negbin2_ga"... | |
| gradlike = negbin2_ga(x,mu,alpha) | |
| Constructing wrapper function "binomial"... | |
| like = binomial(x,n,p) | |
| Constructing wrapper function "binomial_gp"... | |
| gradlike = binomial_gp(x,n,p) | |
| Constructing wrapper function "bernoulli"... | |
| like = bernoulli(x,p) | |
| Constructing wrapper function "bern_grad_p"... | |
| grad_like = bern_grad_p(x,p) | |
| Constructing wrapper function "beta_like"... | |
| like = beta_like(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_x"... | |
| gradlikex = beta_grad_x(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_a"... | |
| gradlikea = beta_grad_a(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_b"... | |
| gradlikeb = beta_grad_b(x,alpha,beta) | |
| Constructing wrapper function "betabin_like"... | |
| like = betabin_like(x,alpha,beta,n) | |
| Constructing wrapper function "betabin_ga"... | |
| gradlike = betabin_ga(x,alpha,beta,n) | |
| Constructing wrapper function "betabin_gb"... | |
| gradlike = betabin_gb(x,alpha,beta,n) | |
| Constructing wrapper function "mvhyperg"... | |
| like = mvhyperg(x,color) | |
| Constructing wrapper function "dirmultinom"... | |
| like = dirmultinom(x,theta) | |
| Constructing wrapper function "wishart"... | |
| like = wishart(x,n,sigma) | |
| Constructing wrapper function "trace"... | |
| trace(mat,tr,[k]) | |
| Constructing wrapper function "gamfun"... | |
| gx = gamfun(xx) | |
| Creating wrapper for Fortran function "gammds"("gammds")... | |
| Constructing wrapper function "gammds"... | |
| gammds = gammds(y,p,ifault) | |
| Creating wrapper for Fortran function "psi"("psi")... | |
| Constructing wrapper function "psi"... | |
| psi = psi(x) | |
| Constructing wrapper function "gser"... | |
| gser(gamser,a,x,gln) | |
| Constructing wrapper function "gcf"... | |
| gcf(gammcf,a,x,gln) | |
| Creating wrapper for Fortran function "gammq"("gammq")... | |
| Constructing wrapper function "gammq"... | |
| gammq = gammq(a,x) | |
| Constructing wrapper function "trans"... | |
| tmat = trans(mat) | |
| Constructing wrapper function "matmult"... | |
| prod = matmult(mat1,mat2) | |
| Constructing wrapper function "dtrm"... | |
| d = dtrm(a) | |
| Constructing wrapper function "elgs"... | |
| elgs(a,indx,[n]) | |
| Creating wrapper for Fortran function "bico"("bico")... | |
| Constructing wrapper function "bico"... | |
| bico = bico(n,k) | |
| Constructing wrapper function "chol"... | |
| c = chol(a,[n]) | |
| Constructing wrapper function "hermpoly"... | |
| cx = hermpoly(n,x) | |
| Constructing wrapper function "set_uniform"... | |
| set_uniform(seed1,seed2) | |
| Constructing wrapper function "categorical"... | |
| like = categorical(x,p) | |
| Constructing wrapper function "rcat"... | |
| s = rcat(p,rands) | |
| Constructing wrapper function "logit"... | |
| ltheta = logit(theta) | |
| Constructing wrapper function "invlogit"... | |
| theta = invlogit(ltheta) | |
| Constructing wrapper function "stukel_logit"... | |
| ltheta = stukel_logit(theta,a1,a2,[overwrite_theta]) | |
| Constructing wrapper function "stukel_invlogit"... | |
| theta = stukel_invlogit(ltheta,a1,a2,[overwrite_ltheta]) | |
| Constructing wrapper function "vonmises"... | |
| like = vonmises(x,mu,kappa) | |
| Constructing wrapper function "pareto"... | |
| like = pareto(x,alpha,m) | |
| Constructing wrapper function "truncated_pareto"... | |
| like = truncated_pareto(x,alpha,m,b) | |
| Constructing wrapper function "fixed_binsize"... | |
| h = fixed_binsize(x,bin0,delta,n) | |
| Constructing wrapper function "weighted_fixed_binsize"... | |
| h = weighted_fixed_binsize(x,w,bin0,delta,n) | |
| Constructing wrapper function "fixed_binsize_nd"... | |
| count = fixed_binsize_nd(x,bin0,delta,n,nc) | |
| Constructing wrapper function "qsorti"... | |
| qsorti(ord,a,[n]) | |
| Constructing wrapper function "checksymm"... | |
| cs = checksymm(x) | |
| Constructing wrapper function "chol_mvnorm"... | |
| like = chol_mvnorm(x,mu,sig,[overwrite_x,overwrite_mu]) | |
| Constructing wrapper function "cov_mvnorm"... | |
| like = cov_mvnorm(x,mu,c,[overwrite_x,overwrite_mu,overwrite_c]) | |
| Constructing wrapper function "prec_mvnorm"... | |
| like = prec_mvnorm(x,mu,tau,[overwrite_x,overwrite_mu,overwrite_tau]) | |
| Constructing wrapper function "blas_wishart"... | |
| like = blas_wishart(x,n,t,[overwrite_x,overwrite_t]) | |
| Constructing wrapper function "blas_wishart_cov"... | |
| like = blas_wishart_cov(x,n,v,[overwrite_x,overwrite_v]) | |
| Constructing wrapper function "dcopy_wrap"... | |
| dcopy_wrap(x,y) | |
| Constructing wrapper function "dtrmm_wrap"... | |
| dtrmm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dtrsm_wrap"... | |
| dtrsm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dpotrf_wrap"... | |
| info = dpotrf_wrap(a) | |
| Constructing wrapper function "dchdc_wrap"... | |
| piv,info = dchdc_wrap(a) | |
| Constructing wrapper function "dpotrs_wrap"... | |
| info = dpotrs_wrap(chol_fac,b,[uplo]) | |
| Creating wrapper for Fortran function "ppnd16"("ppnd16")... | |
| Constructing wrapper function "ppnd16"... | |
| ppnd16 = ppnd16(p,ifault) | |
| Constructing wrapper function "calerf"... | |
| calerf(arg,result,jint) | |
| Creating wrapper for Fortran function "derf"("derf")... | |
| Constructing wrapper function "derf"... | |
| derf = derf(x) | |
| Creating wrapper for Fortran function "derfc"("derfc")... | |
| Constructing wrapper function "derfc"... | |
| derfc = derfc(x) | |
| Creating wrapper for Fortran function "derfcx"("derfcx")... | |
| Constructing wrapper function "derfcx"... | |
| derfcx = derfcx(x) | |
| Constructing wrapper function "matinput"... | |
| matinput(uid,matout,rowused,colused,r15,[rowmax,colmax]) | |
| Constructing wrapper function "vecinput"... | |
| vecinput(uid,vecout,vecused,r15,[vecmax]) | |
| Constructing wrapper function "oneparse"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '(*)' | |
| oneparse(instring,delimit,tokens,tokcnt,r15,[maxtok]) | |
| Constructing wrapper function "gibbmain"... | |
| nmin,kthin,nburn,nprec,kmind = gibbmain(original,q,r,s,epsilon) | |
| Creating wrapper for Fortran function "empquant"("empquant")... | |
| Constructing wrapper function "empquant"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '*' | |
| empquant = empquant(data,q,work,[iteracnt]) | |
| Constructing wrapper function "dichot"... | |
| dichot(data,cutpt,zt,[iteracnt]) | |
| Constructing wrapper function "thin"... | |
| thin(series,kthin,result,thincnt,[iteracnt]) | |
| Constructing wrapper function "mctest"... | |
| mctest(data,g2,bic,[datacnt]) | |
| Constructing wrapper function "indtest"... | |
| indtest(data,g2,bic,[datacnt]) | |
| Constructing wrapper function "mcest"... | |
| mcest(data,alpha,beta,[datacnt]) | |
| Creating wrapper for Fortran function "ppnd7"("ppnd7")... | |
| Constructing wrapper function "ppnd7"... | |
| ppnd7 = ppnd7(p,ifault) | |
| Constructing wrapper function "ssort"... | |
| ssort(x,y,kflag,[n]) | |
| Constructing COMMON block support for "unif_seeds"... | |
| s1,s2 | |
| Wrote C/API module "flib" to file "build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c" | |
| Fortran 77 wrappers are saved to "build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| copying /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.c -> build/src.macosx-10.9-x86_64-2.7 | |
| copying /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.h -> build/src.macosx-10.9-x86_64-2.7 | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c | |
| creating build/src.macosx-10.9-x86_64-2.7/pymc/gp | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/linalg_utils.f' (format:fix,strict) | |
| Reading file 'pymc/blas_wrap.f' (format:fix,strict) | |
| Post-processing... | |
| Block: linalg_utils | |
| Block: remove_duplicates | |
| Block: check_repeats | |
| Block: diag_call | |
| Block: cov_fun | |
| {'attrspec': ['intent(hide)']} | |
| In: :linalg_utils:pymc/gp/linalg_utils.f:basis_diag_call | |
| vars2fortran: No typespec for argument "nbas". | |
| Block: basis_diag_call | |
| Block: gp_array_logp | |
| Block: asqs | |
| {'attrspec': ['intent(hide)']} | |
| In: :linalg_utils:pymc/blas_wrap.f:dcopy_wrap | |
| vars2fortran: No typespec for argument "nx". | |
| Block: dcopy_wrap | |
| Block: dtrmm_wrap | |
| Block: dtrsm_wrap | |
| Block: dpotrf_wrap | |
| Block: dchdc_wrap | |
| Block: dpotrs_wrap | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Constructing call-back function "cb_cov_fun_in_diag_call__user__routines" | |
| def cov_fun(xe): return q | |
| Building module "linalg_utils"... | |
| Constructing wrapper function "remove_duplicates"... | |
| nr,rf,rt,nu,xu,ui = remove_duplicates(x) | |
| Constructing wrapper function "check_repeats"... | |
| f,new_indices,n_new_indices = check_repeats(x,x_sofar,f_sofar) | |
| Constructing wrapper function "diag_call"... | |
| v = diag_call(x,cov_fun,[cov_fun_extra_args]) | |
| Constructing wrapper function "basis_diag_call"... | |
| v = basis_diag_call(basis_x) | |
| Constructing wrapper function "gp_array_logp"... | |
| like = gp_array_logp(x,mu,sig,[overwrite_x,overwrite_mu]) | |
| Constructing wrapper function "asqs"... | |
| asqs(c,s,[cmin,cmax]) | |
| Constructing wrapper function "dcopy_wrap"... | |
| dcopy_wrap(x,y) | |
| Constructing wrapper function "dtrmm_wrap"... | |
| dtrmm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dtrsm_wrap"... | |
| dtrsm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dpotrf_wrap"... | |
| info = dpotrf_wrap(a) | |
| Constructing wrapper function "dchdc_wrap"... | |
| piv,info = dchdc_wrap(a) | |
| Constructing wrapper function "dpotrs_wrap"... | |
| info = dpotrs_wrap(chol_fac,b,[uplo]) | |
| Wrote C/API module "linalg_utils" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/incomplete_chol.f' (format:fix,strict) | |
| Post-processing... | |
| Block: incomplete_chol | |
| Block: ichol_continue | |
| Block: rowfun | |
| Block: ichol | |
| Block: rowfun | |
| {'attrspec': ['intent(hide)']} | |
| In: :incomplete_chol:pymc/gp/incomplete_chol.f:ichol_basis | |
| vars2fortran: No typespec for argument "n_nug". | |
| Block: ichol_basis | |
| Block: ichol_full | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Constructing call-back function "cb_rowfun_in_ichol_continue__user__routines" | |
| def rowfun(itot,x,rowvec): return | |
| Constructing call-back function "cb_rowfun_in_ichol__user__routines" | |
| def rowfun(i,x,rowvec): return | |
| Building module "incomplete_chol"... | |
| Constructing wrapper function "ichol_continue"... | |
| m,piv = ichol_continue(sig,diag,piv,reltol,x,rowfun,mold,[overwrite_x,rowfun_extra_args]) | |
| Constructing wrapper function "ichol"... | |
| sig,m,piv = ichol(diag,reltol,x,rowfun,rl,[overwrite_x,rowfun_extra_args]) | |
| Constructing wrapper function "ichol_basis"... | |
| sig,p,m = ichol_basis(basis,nug,reltol) | |
| Constructing wrapper function "ichol_full"... | |
| sig,m,p = ichol_full(c,reltol) | |
| Wrote C/API module "incomplete_chol" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c | |
| creating build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/cov_funs/isotropic_cov_funs.f' (format:fix,strict) | |
| Reading file 'blas/BLAS/dscal.f' (format:fix,strict) | |
| Post-processing... | |
| Block: isotropic_cov_funs | |
| Block: imul | |
| Block: symmetrize | |
| Block: matern | |
| Block: nsmatrn | |
| Block: stein_spatiotemporal | |
| Block: nsst | |
| Block: gaussian | |
| Block: exponential | |
| Block: brownian | |
| Block: frac_brownian | |
| Block: pow_exp | |
| Block: sphere | |
| Block: quadratic | |
| Block: dgamma | |
| Block: rkbesl | |
| Block: dscal | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "isotropic_cov_funs"... | |
| Constructing wrapper function "imul"... | |
| imul(c,a,[cmin,cmax,symm]) | |
| Constructing wrapper function "symmetrize"... | |
| symmetrize(c,[cmin,cmax]) | |
| Constructing wrapper function "matern"... | |
| matern(c,diff_degree,[cmin,cmax,symm]) | |
| Constructing wrapper function "nsmatrn"... | |
| nsmatrn(c,ddx,ddy,hx,hy,nmax,[cmin,cmax,symm]) | |
| Constructing wrapper function "stein_spatiotemporal"... | |
| stein_spatiotemporal(c,gt,origin_val,[cmin,cmax,symm]) | |
| Constructing wrapper function "nsst"... | |
| nsst(c,gt,origin_val,hx,hy,[cmin,cmax,symm]) | |
| Constructing wrapper function "gaussian"... | |
| gaussian(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "exponential"... | |
| exponential(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "brownian"... | |
| brownian(c,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "frac_brownian"... | |
| frac_brownian(c,x,y,h,[cmin,cmax,symm]) | |
| Constructing wrapper function "pow_exp"... | |
| pow_exp(c,pow,[cmin,cmax,symm]) | |
| Constructing wrapper function "sphere"... | |
| sphere(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "quadratic"... | |
| quadratic(c,phi,[cmin,cmax,symm]) | |
| Creating wrapper for Fortran function "dgamma"("dgamma")... | |
| Constructing wrapper function "dgamma"... | |
| dgamma = dgamma(x) | |
| Constructing wrapper function "rkbesl"... | |
| bk = rkbesl(x,alpha,nb,ize,ncalc) | |
| Constructing wrapper function "dscal"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '*' | |
| dscal(n,da,dx,incx) | |
| Wrote C/API module "isotropic_cov_funs" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c" | |
| Fortran 77 wrappers are saved to "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/cov_funs/distances.f' (format:fix,strict) | |
| Post-processing... | |
| Block: distances | |
| Block: euclidean | |
| Block: geographic | |
| Block: paniso_geo_rad | |
| Block: aniso_geo_rad | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "distances"... | |
| Constructing wrapper function "euclidean"... | |
| euclidean(d,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "geographic"... | |
| geographic(d,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "paniso_geo_rad"... | |
| paniso_geo_rad(d,x,y,ctrs,scals,[cmin,cmax,symm]) | |
| Constructing wrapper function "aniso_geo_rad"... | |
| aniso_geo_rad(d,x,y,inc,ecc,[cmin,cmax,symm]) | |
| Wrote C/API module "distances" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| creating pip-egg-info/pymc.egg-info | |
| writing pip-egg-info/pymc.egg-info/PKG-INFO | |
| writing top-level names to pip-egg-info/pymc.egg-info/top_level.txt | |
| writing dependency_links to pip-egg-info/pymc.egg-info/dependency_links.txt | |
| writing pip-egg-info/pymc.egg-info/PKG-INFO | |
| writing top-level names to pip-egg-info/pymc.egg-info/top_level.txt | |
| writing dependency_links to pip-egg-info/pymc.egg-info/dependency_links.txt | |
| writing manifest file 'pip-egg-info/pymc.egg-info/SOURCES.txt' | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'pip-egg-info/pymc.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| warning: no files found matching 'README.txt' | |
| warning: no files found matching 'INSTALL.txt' | |
| warning: no files found matching 'docs/UserGuide.pdf' | |
| writing manifest file 'pip-egg-info/pymc.egg-info/SOURCES.txt' | |
| Source in /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc has version 2.3, which satisfies requirement pymc | |
| Installing collected packages: pymc | |
| Running setup.py install for pymc | |
| Running command /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import setuptools;__file__='/private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-zXRzxn-record/install-record.txt --single-version-externally-managed | |
| running install | |
| running build | |
| running config_cc | |
| unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
| running config_fc | |
| unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
| running build_src | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| running build_py | |
| creating build/lib.macosx-10.9-x86_64-2.7 | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/calc_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CircularStochastic.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CommonDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/datatypes.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/decorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/diagnostics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/InstantiationDecorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Matplot.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Node.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NormalApproximation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NumpyDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/progressbar.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/PyMCObjects.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/ScipyDistributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/six.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/StepMethods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/threadpool.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/base.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5ea.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/no_trace.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/pickle.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/ram.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/sqlite.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/txt.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/custom_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_gof.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_linear.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_null.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/gelman_bioassay.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma_data.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/weibull_fit.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/zip.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/covparams.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mesh_choice.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/PyMCmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/realizations.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/objectmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_adaptive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_AM.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_binary_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_convergence.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_database.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_GP_MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_gradients.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_instantiation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_interactive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_MCMCSampler.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_norm_approx.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_special_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/BasisCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Covariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/FullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gp_submodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gpplots.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/GPutils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/step_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/bases.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/brownian.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/cov_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/nsmatern.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| running build_ext | |
| customize UnixCCompiler | |
| customize UnixCCompiler using build_ext | |
| customize Gnu95FCompiler | |
| Found executable /usr/local/bin/gfortran | |
| customize Gnu95FCompiler | |
| customize Gnu95FCompiler using build_ext | |
| building 'pymc.flib' extension | |
| compiling C sources | |
| C compiler: clang -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/opt/zlib/include | |
| creating build/temp.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/cephes | |
| creating build/temp.macosx-10.9-x86_64-2.7/build | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| extra options: '-msse3' | |
| clang: build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:18: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16817:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds] | |
| d = shape(x,2); | |
| ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:86:24: note: expanded from macro 'shape' | |
| #define shape(var,dim) var ## _Dims[dim] | |
| ^ | |
| <scratch space>:394:1: note: expanded from here | |
| x_Dims | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16718:3: note: array 'x_Dims' declared here | |
| npy_intp x_Dims[2] = {-1, -1}; | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:181:12: warning: unused function 'f2py_size' [-Wunused-function] | |
| static int f2py_size(PyArrayObject* var, ...) | |
| ^ | |
| 3 warnings generated. | |
| clang: build/src.macosx-10.9-x86_64-2.7/fortranobject.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.c:2: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] | |
| if ((fp->defs[i].func==NULL)) { | |
| ~~~~~~~~~~~~~~~~^~~~~~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: remove extraneous parentheses around the comparison to silence this warning | |
| if ((fp->defs[i].func==NULL)) { | |
| ~ ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: use '=' to turn this equality comparison into an assignment | |
| if ((fp->defs[i].func==NULL)) { | |
| ^~ | |
| = | |
| 2 warnings generated. | |
| clang: cephes/chbevl.c | |
| clang: cephes/i0.c | |
| clang: cephes/c2f.c | |
| compiling Fortran sources | |
| Fortran f77 compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran f90 compiler: /usr/local/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran fix compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| creating build/temp.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| gfortran:f77: pymc/flib.f | |
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| pymc/flib.f:316.55: | |
| DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like | |
| 1 | |
| Warning: Unused variable 'd_now' declared at (1) | |
| pymc/flib.f:314.42: | |
| INTEGER i, nx, nalph, nmu, ntau, tnx | |
| 1 | |
| Warning: Unused variable 'tnx' declared at (1) | |
| pymc/flib.f:442.71: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'gradxlike' at (1) | |
| pymc/flib.f:461.40: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'high' declared at (1) | |
| pymc/flib.f:458.36: | |
| INTEGER n, nlower, nupper, i | |
| 1 | |
| Warning: Unused variable 'i' declared at (1) | |
| pymc/flib.f:461.29: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'like' declared at (1) | |
| pymc/flib.f:461.34: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'low' declared at (1) | |
| pymc/flib.f:442.39: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'lower' at (1) | |
| pymc/flib.f:442.45: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'upper' at (1) | |
| pymc/flib.f:442.33: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'x' at (1) | |
| pymc/flib.f:692.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:760.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:834.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:906.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:976.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:1186.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1185.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1185.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1300.55: | |
| DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf | |
| 1 | |
| Warning: Unused variable 'cdf' declared at (1) | |
| pymc/flib.f:1302.29: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1302.36: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'gammq' declared at (1) | |
| pymc/flib.f:1301.59: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumcdf' declared at (1) | |
| pymc/flib.f:1301.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1301.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1402.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2154.40: | |
| DOUBLE PRECISION gradlike(n), grad | |
| 1 | |
| Warning: Unused variable 'grad' declared at (1) | |
| pymc/flib.f:2665.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2728.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2793.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2903.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2959.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3021.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3396.58: | |
| DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike | |
| 1 | |
| Warning: Unused variable 'glike' declared at (1) | |
| pymc/flib.f:3646.37: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3646.29: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3706.37: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3706.29: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3836.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:4039.26: | |
| DOUBLE PRECISION psi | |
| 1 | |
| Warning: Unused variable 'psi' declared at (1) | |
| pymc/flib.f:4266.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:4332.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:5184.35: | |
| DOUBLE PRECISION like, factln, infinity, sump | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:5186.23: | |
| INTEGER i,j,n_tmp | |
| 1 | |
| Warning: Unused variable 'n_tmp' declared at (1) | |
| pymc/flib.f:5434.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5488.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5481.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5535.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5528.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f: In function 'elgs': | |
| pymc/flib.f:4882:0: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| K = I | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gl': | |
| pymc/flib.f:778:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gs': | |
| pymc/flib.f:994:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| gfortran:f77: pymc/histogram.f | |
| gfortran:f77: pymc/flib_blas.f | |
| pymc/flib_blas.f:202.25: | |
| DOUBLE PRECISION PI | |
| 1 | |
| Warning: Unused variable 'pi' declared at (1) | |
| gfortran:f77: pymc/blas_wrap.f | |
| gfortran:f77: pymc/math.f | |
| pymc/math.f:396.6: | |
| DOUBLE PRECISION FUNCTION DERF(X) | |
| 1 | |
| Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| pymc/math.f:417.6: | |
| DOUBLE PRECISION FUNCTION DERFC(X) | |
| 1 | |
| Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| gfortran:f77: pymc/gibbsit.f | |
| pymc/gibbsit.f:2160.5: | |
| 215 IF (R .GT. .5898437) GO TO 220 | |
| 1 | |
| Warning: Label 215 at (1) defined but not used | |
| pymc/gibbsit.f:2077.5: | |
| 115 IF (R .GT. .5898437) GO TO 120 | |
| 1 | |
| Warning: Label 115 at (1) defined but not used | |
| pymc/gibbsit.f:2064.5: | |
| 15 IF (KFLAG.GE.1) GO TO 30 | |
| 1 | |
| Warning: Label 15 at (1) defined but not used | |
| pymc/gibbsit.f:1204.48: | |
| cutpt = empquant(original,iteracnt,qhat,work) | |
| 1 | |
| Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) | |
| gfortran:f77: build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f | |
| /usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| error: Command "/usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate" failed with exit status 1 | |
| Complete output from command /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import setuptools;__file__='/private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-zXRzxn-record/install-record.txt --single-version-externally-managed: | |
| running install | |
| running build | |
| running config_cc | |
| unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
| running config_fc | |
| unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
| running build_src | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| running build_py | |
| creating build/lib.macosx-10.9-x86_64-2.7 | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/calc_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CircularStochastic.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CommonDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/datatypes.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/decorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/diagnostics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/InstantiationDecorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Matplot.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Node.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NormalApproximation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NumpyDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/progressbar.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/PyMCObjects.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/ScipyDistributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/six.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/StepMethods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/threadpool.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/base.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5ea.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/no_trace.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/pickle.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/ram.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/sqlite.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/txt.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/custom_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_gof.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_linear.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_null.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/gelman_bioassay.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma_data.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/weibull_fit.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/zip.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/covparams.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mesh_choice.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/PyMCmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/realizations.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/objectmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_adaptive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_AM.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_binary_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_convergence.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_database.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_GP_MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_gradients.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_instantiation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_interactive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_MCMCSampler.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_norm_approx.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_special_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/BasisCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Covariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/FullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gp_submodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gpplots.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/GPutils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/step_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/bases.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/brownian.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/cov_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/nsmatern.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| running build_ext | |
| customize UnixCCompiler | |
| customize UnixCCompiler using build_ext | |
| customize Gnu95FCompiler | |
| Found executable /usr/local/bin/gfortran | |
| customize Gnu95FCompiler | |
| customize Gnu95FCompiler using build_ext | |
| building 'pymc.flib' extension | |
| compiling C sources | |
| C compiler: clang -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/opt/zlib/include | |
| creating build/temp.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/cephes | |
| creating build/temp.macosx-10.9-x86_64-2.7/build | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| extra options: '-msse3' | |
| clang: build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:18: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16817:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds] | |
| d = shape(x,2); | |
| ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:86:24: note: expanded from macro 'shape' | |
| #define shape(var,dim) var ## _Dims[dim] | |
| ^ | |
| <scratch space>:394:1: note: expanded from here | |
| x_Dims | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16718:3: note: array 'x_Dims' declared here | |
| npy_intp x_Dims[2] = {-1, -1}; | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:181:12: warning: unused function 'f2py_size' [-Wunused-function] | |
| static int f2py_size(PyArrayObject* var, ...) | |
| ^ | |
| 3 warnings generated. | |
| clang: build/src.macosx-10.9-x86_64-2.7/fortranobject.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.c:2: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] | |
| if ((fp->defs[i].func==NULL)) { | |
| ~~~~~~~~~~~~~~~~^~~~~~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: remove extraneous parentheses around the comparison to silence this warning | |
| if ((fp->defs[i].func==NULL)) { | |
| ~ ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: use '=' to turn this equality comparison into an assignment | |
| if ((fp->defs[i].func==NULL)) { | |
| ^~ | |
| = | |
| 2 warnings generated. | |
| clang: cephes/chbevl.c | |
| clang: cephes/i0.c | |
| clang: cephes/c2f.c | |
| compiling Fortran sources | |
| Fortran f77 compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran f90 compiler: /usr/local/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran fix compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| creating build/temp.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| gfortran:f77: pymc/flib.f | |
| Warning: Nonconforming tab character in column 1 of line 509 | |
| Warning: Nonconforming tab character in column 1 of line 510 | |
| Warning: Nonconforming tab character in column 1 of line 511 | |
| Warning: Nonconforming tab character in column 1 of line 512 | |
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| Warning: Nonconforming tab character in column 6 of line 707 | |
| Warning: Nonconforming tab character in column 6 of line 711 | |
| Warning: Nonconforming tab character in column 6 of line 715 | |
| Warning: Nonconforming tab character in column 1 of line 723 | |
| Warning: Nonconforming tab character in column 6 of line 775 | |
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| Warning: Nonconforming tab character in column 1 of line 791 | |
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| Warning: Nonconforming tab character in column 1 of line 865 | |
| Warning: Nonconforming tab character in column 6 of line 921 | |
| Warning: Nonconforming tab character in column 6 of line 925 | |
| Warning: Nonconforming tab character in column 6 of line 929 | |
| Warning: Nonconforming tab character in column 1 of line 937 | |
| Warning: Nonconforming tab character in column 6 of line 991 | |
| Warning: Nonconforming tab character in column 6 of line 995 | |
| Warning: Nonconforming tab character in column 6 of line 999 | |
| Warning: Nonconforming tab character in column 1 of line 1007 | |
| Warning: Nonconforming tab character in column 1 of line 1195 | |
| Warning: Nonconforming tab character in column 1 of line 1196 | |
| Warning: Nonconforming tab character in column 1 of line 1197 | |
| Warning: Nonconforming tab character in column 1 of line 1200 | |
| Warning: Nonconforming tab character in column 1 of line 1201 | |
| Warning: Nonconforming tab character in column 1 of line 1408 | |
| Warning: Nonconforming tab character in column 1 of line 1409 | |
| Warning: Nonconforming tab character in column 1 of line 1412 | |
| Warning: Nonconforming tab character in column 5 of line 1420 | |
| Warning: Nonconforming tab character in column 5 of line 1421 | |
| Warning: Nonconforming tab character in column 5 of line 1422 | |
| Warning: Nonconforming tab character in column 5 of line 1423 | |
| Warning: Nonconforming tab character in column 5 of line 1424 | |
| Warning: Nonconforming tab character in column 5 of line 1425 | |
| Warning: Nonconforming tab character in column 1 of line 1452 | |
| Warning: Nonconforming tab character in column 1 of line 1454 | |
| Warning: Nonconforming tab character in column 1 of line 1457 | |
| Warning: Nonconforming tab character in column 5 of line 1465 | |
| Warning: Nonconforming tab character in column 5 of line 1466 | |
| Warning: Nonconforming tab character in column 5 of line 1467 | |
| Warning: Nonconforming tab character in column 5 of line 1469 | |
| Warning: Nonconforming tab character in column 5 of line 1470 | |
| Warning: Nonconforming tab character in column 5 of line 1471 | |
| Warning: Nonconforming tab character in column 5 of line 1472 | |
| Warning: Nonconforming tab character in column 5 of line 1473 | |
| Warning: Nonconforming tab character in column 1 of line 1478 | |
| Warning: Nonconforming tab character in column 1 of line 1499 | |
| Warning: Nonconforming tab character in column 1 of line 1501 | |
| Warning: Nonconforming tab character in column 1 of line 1504 | |
| Warning: Nonconforming tab character in column 5 of line 1512 | |
| Warning: Nonconforming tab character in column 5 of line 1513 | |
| Warning: Nonconforming tab character in column 5 of line 1514 | |
| Warning: Nonconforming tab character in column 5 of line 1515 | |
| Warning: Nonconforming tab character in column 5 of line 1516 | |
| Warning: Nonconforming tab character in column 5 of line 1517 | |
| Warning: Nonconforming tab character in column 1 of line 1740 | |
| Warning: Nonconforming tab character in column 1 of line 1743 | |
| Warning: Nonconforming tab character in column 1 of line 1746 | |
| Warning: Nonconforming tab character in column 1 of line 1755 | |
| Warning: Nonconforming tab character in column 1 of line 1783 | |
| Warning: Nonconforming tab character in column 1 of line 1786 | |
| Warning: Nonconforming tab character in column 1 of line 1789 | |
| Warning: Nonconforming tab character in column 1 of line 1798 | |
| Warning: Nonconforming tab character in column 1 of line 1800 | |
| Warning: Nonconforming tab character in column 1 of line 1832 | |
| Warning: Nonconforming tab character in column 1 of line 1835 | |
| Warning: Nonconforming tab character in column 1 of line 1838 | |
| Warning: Nonconforming tab character in column 1 of line 1847 | |
| Warning: Nonconforming tab character in column 1 of line 1849 | |
| Warning: Nonconforming tab character in column 1 of line 1977 | |
| Warning: Nonconforming tab character in column 1 of line 1978 | |
| Warning: Nonconforming tab character in column 1 of line 2030 | |
| Warning: Nonconforming tab character in column 1 of line 2031 | |
| Warning: Nonconforming tab character in column 1 of line 2079 | |
| Warning: Nonconforming tab character in column 1 of line 2080 | |
| Warning: Nonconforming tab character in column 1 of line 2168 | |
| Warning: Nonconforming tab character in column 1 of line 2174 | |
| Warning: Nonconforming tab character in column 1 of line 2218 | |
| Warning: Nonconforming tab character in column 1 of line 2224 | |
| Warning: Nonconforming tab character in column 1 of line 2339 | |
| Warning: Nonconforming tab character in column 1 of line 2395 | |
| Warning: Nonconforming tab character in column 1 of line 2692 | |
| Warning: Nonconforming tab character in column 1 of line 2693 | |
| Warning: Nonconforming tab character in column 1 of line 2694 | |
| Warning: Nonconforming tab character in column 1 of line 2696 | |
| Warning: Nonconforming tab character in column 1 of line 2697 | |
| Warning: Nonconforming tab character in column 1 of line 2756 | |
| Warning: Nonconforming tab character in column 1 of line 2820 | |
| Warning: Nonconforming tab character in column 1 of line 2881 | |
| Warning: Nonconforming tab character in column 1 of line 3191 | |
| Warning: Nonconforming tab character in column 1 of line 3192 | |
| Warning: Nonconforming tab character in column 1 of line 3656 | |
| Warning: Nonconforming tab character in column 1 of line 3657 | |
| Warning: Nonconforming tab character in column 1 of line 3658 | |
| Warning: Nonconforming tab character in column 1 of line 3660 | |
| Warning: Nonconforming tab character in column 1 of line 3661 | |
| Warning: Nonconforming tab character in column 1 of line 3662 | |
| Warning: Nonconforming tab character in column 1 of line 3664 | |
| Warning: Nonconforming tab character in column 1 of line 3665 | |
| Warning: Nonconforming tab character in column 1 of line 3666 | |
| Warning: Nonconforming tab character in column 1 of line 3716 | |
| Warning: Nonconforming tab character in column 1 of line 3717 | |
| Warning: Nonconforming tab character in column 1 of line 3718 | |
| Warning: Nonconforming tab character in column 1 of line 3720 | |
| Warning: Nonconforming tab character in column 1 of line 3721 | |
| Warning: Nonconforming tab character in column 1 of line 3722 | |
| Warning: Nonconforming tab character in column 1 of line 3724 | |
| Warning: Nonconforming tab character in column 1 of line 3725 | |
| Warning: Nonconforming tab character in column 1 of line 3726 | |
| Warning: Nonconforming tab character in column 1 of line 3732 | |
| Warning: Nonconforming tab character in column 1 of line 3846 | |
| Warning: Nonconforming tab character in column 1 of line 3847 | |
| Warning: Nonconforming tab character in column 1 of line 3849 | |
| Warning: Nonconforming tab character in column 1 of line 3851 | |
| Warning: Nonconforming tab character in column 1 of line 3875 | |
| Warning: Nonconforming tab character in column 1 of line 3876 | |
| Warning: Nonconforming tab character in column 1 of line 3877 | |
| Warning: Nonconforming tab character in column 1 of line 3878 | |
| Warning: Nonconforming tab character in column 1 of line 4276 | |
| Warning: Nonconforming tab character in column 1 of line 4277 | |
| Warning: Nonconforming tab character in column 1 of line 4278 | |
| Warning: Nonconforming tab character in column 1 of line 4280 | |
| Warning: Nonconforming tab character in column 1 of line 4281 | |
| Warning: Nonconforming tab character in column 1 of line 4282 | |
| Warning: Nonconforming tab character in column 1 of line 4284 | |
| Warning: Nonconforming tab character in column 1 of line 4285 | |
| Warning: Nonconforming tab character in column 1 of line 4286 | |
| Warning: Nonconforming tab character in column 1 of line 4288 | |
| Warning: Nonconforming tab character in column 1 of line 4289 | |
| Warning: Nonconforming tab character in column 1 of line 4290 | |
| Warning: Nonconforming tab character in column 1 of line 4342 | |
| Warning: Nonconforming tab character in column 1 of line 4343 | |
| Warning: Nonconforming tab character in column 1 of line 4344 | |
| Warning: Nonconforming tab character in column 1 of line 4346 | |
| Warning: Nonconforming tab character in column 1 of line 4347 | |
| Warning: Nonconforming tab character in column 1 of line 4348 | |
| Warning: Nonconforming tab character in column 1 of line 4350 | |
| Warning: Nonconforming tab character in column 1 of line 4351 | |
| Warning: Nonconforming tab character in column 1 of line 4352 | |
| Warning: Nonconforming tab character in column 1 of line 4354 | |
| Warning: Nonconforming tab character in column 1 of line 4355 | |
| Warning: Nonconforming tab character in column 1 of line 4356 | |
| Warning: Nonconforming tab character in column 1 of line 4620 | |
| Warning: Nonconforming tab character in column 1 of line 4622 | |
| Warning: Nonconforming tab character in column 1 of line 4623 | |
| Warning: Nonconforming tab character in column 1 of line 4624 | |
| Warning: Nonconforming tab character in column 1 of line 4626 | |
| Warning: Nonconforming tab character in column 1 of line 4628 | |
| Warning: Nonconforming tab character in column 1 of line 4630 | |
| Warning: Nonconforming tab character in column 1 of line 4632 | |
| Warning: Nonconforming tab character in column 1 of line 4633 | |
| Warning: Nonconforming tab character in column 1 of line 4634 | |
| Warning: Nonconforming tab character in column 1 of line 4635 | |
| Warning: Nonconforming tab character in column 1 of line 4637 | |
| Warning: Nonconforming tab character in column 1 of line 4638 | |
| Warning: Nonconforming tab character in column 1 of line 4639 | |
| Warning: Nonconforming tab character in column 1 of line 4640 | |
| Warning: Nonconforming tab character in column 1 of line 4642 | |
| Warning: Nonconforming tab character in column 1 of line 4643 | |
| Warning: Nonconforming tab character in column 1 of line 4644 | |
| Warning: Nonconforming tab character in column 1 of line 4645 | |
| Warning: Nonconforming tab character in column 1 of line 4646 | |
| pymc/flib.f:316.55: | |
| DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like | |
| 1 | |
| Warning: Unused variable 'd_now' declared at (1) | |
| pymc/flib.f:314.42: | |
| INTEGER i, nx, nalph, nmu, ntau, tnx | |
| 1 | |
| Warning: Unused variable 'tnx' declared at (1) | |
| pymc/flib.f:442.71: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'gradxlike' at (1) | |
| pymc/flib.f:461.40: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'high' declared at (1) | |
| pymc/flib.f:458.36: | |
| INTEGER n, nlower, nupper, i | |
| 1 | |
| Warning: Unused variable 'i' declared at (1) | |
| pymc/flib.f:461.29: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'like' declared at (1) | |
| pymc/flib.f:461.34: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'low' declared at (1) | |
| pymc/flib.f:442.39: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'lower' at (1) | |
| pymc/flib.f:442.45: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'upper' at (1) | |
| pymc/flib.f:442.33: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'x' at (1) | |
| pymc/flib.f:692.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:760.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:834.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:906.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:976.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:1186.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1185.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1185.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1300.55: | |
| DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf | |
| 1 | |
| Warning: Unused variable 'cdf' declared at (1) | |
| pymc/flib.f:1302.29: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1302.36: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'gammq' declared at (1) | |
| pymc/flib.f:1301.59: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumcdf' declared at (1) | |
| pymc/flib.f:1301.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1301.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1402.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2154.40: | |
| DOUBLE PRECISION gradlike(n), grad | |
| 1 | |
| Warning: Unused variable 'grad' declared at (1) | |
| pymc/flib.f:2665.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2728.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2793.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2903.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2959.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3021.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3396.58: | |
| DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike | |
| 1 | |
| Warning: Unused variable 'glike' declared at (1) | |
| pymc/flib.f:3646.37: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3646.29: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3706.37: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3706.29: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3836.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:4039.26: | |
| DOUBLE PRECISION psi | |
| 1 | |
| Warning: Unused variable 'psi' declared at (1) | |
| pymc/flib.f:4266.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:4332.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:5184.35: | |
| DOUBLE PRECISION like, factln, infinity, sump | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:5186.23: | |
| INTEGER i,j,n_tmp | |
| 1 | |
| Warning: Unused variable 'n_tmp' declared at (1) | |
| pymc/flib.f:5434.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5488.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5481.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5535.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5528.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f: In function 'elgs': | |
| pymc/flib.f:4882:0: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| K = I | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gl': | |
| pymc/flib.f:778:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gs': | |
| pymc/flib.f:994:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| gfortran:f77: pymc/histogram.f | |
| gfortran:f77: pymc/flib_blas.f | |
| pymc/flib_blas.f:202.25: | |
| DOUBLE PRECISION PI | |
| 1 | |
| Warning: Unused variable 'pi' declared at (1) | |
| gfortran:f77: pymc/blas_wrap.f | |
| gfortran:f77: pymc/math.f | |
| pymc/math.f:396.6: | |
| DOUBLE PRECISION FUNCTION DERF(X) | |
| 1 | |
| Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| pymc/math.f:417.6: | |
| DOUBLE PRECISION FUNCTION DERFC(X) | |
| 1 | |
| Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| gfortran:f77: pymc/gibbsit.f | |
| pymc/gibbsit.f:2160.5: | |
| 215 IF (R .GT. .5898437) GO TO 220 | |
| 1 | |
| Warning: Label 215 at (1) defined but not used | |
| pymc/gibbsit.f:2077.5: | |
| 115 IF (R .GT. .5898437) GO TO 120 | |
| 1 | |
| Warning: Label 115 at (1) defined but not used | |
| pymc/gibbsit.f:2064.5: | |
| 15 IF (KFLAG.GE.1) GO TO 30 | |
| 1 | |
| Warning: Label 15 at (1) defined but not used | |
| pymc/gibbsit.f:1204.48: | |
| cutpt = empquant(original,iteracnt,qhat,work) | |
| 1 | |
| Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) | |
| gfortran:f77: build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f | |
| /usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| error: Command "/usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate" failed with exit status 1 | |
| ---------------------------------------- | |
| Cleaning up... | |
| Removing temporary dir /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga... | |
| Command /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import setuptools;__file__='/private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-zXRzxn-record/install-record.txt --single-version-externally-managed failed with error code 1 in /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc | |
| Exception information: | |
| Traceback (most recent call last): | |
| File "/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.4.1-py2.7.egg/pip/basecommand.py", line 134, in main | |
| status = self.run(options, args) | |
| File "/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.4.1-py2.7.egg/pip/commands/install.py", line 241, in run | |
| requirement_set.install(install_options, global_options, root=options.root_path) | |
| File "/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.4.1-py2.7.egg/pip/req.py", line 1298, in install | |
| requirement.install(install_options, global_options, *args, **kwargs) | |
| File "/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.4.1-py2.7.egg/pip/req.py", line 625, in install | |
| cwd=self.source_dir, filter_stdout=self._filter_install, show_stdout=False) | |
| File "/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.4.1-py2.7.egg/pip/util.py", line 670, in call_subprocess | |
| % (command_desc, proc.returncode, cwd)) | |
| InstallationError: Command /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import setuptools;__file__='/private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-zXRzxn-record/install-record.txt --single-version-externally-managed failed with error code 1 in /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc | |
| Storing complete log in /Users/olga/.pip/pip.log | |
| scrm-bio-228-232-2:workspace-git olga$ clear | |
| scrm-bio-228-232-2:workspace-git olga$ echo 'After installing this gcc/gfortran:' http://r.research.att.com/tools/gcc-42-5666.3-darwin11.pkg | |
| After installing this gcc/gfortran: http://r.research.att.com/tools/gcc-42-5666.3-darwin11.pkg | |
| scrm-bio-228-232-2:workspace-git olga$ pip install -vvv pymc | |
| Downloading/unpacking pymc | |
| Getting page https://pypi.python.org/simple/pymc/ | |
| URLs to search for versions for pymc: | |
| * https://pypi.python.org/simple/pymc/ | |
| Analyzing links from page https://pypi.python.org/simple/pymc/ | |
| Skipping link https://pypi.python.org/packages/2.5/p/pymc/pymc-2.0-py2.5-macosx-10.3-i386.egg#md5=23886f86615004f777a0470c69edf265 (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.5/p/pymc/pymc-2.0.win32-py2.5.exe#md5=a96a9c90edd4848bffdff8a809b901e8 (from https://pypi.python.org/simple/pymc/); unknown archive format: .exe | |
| Skipping link https://pypi.python.org/packages/2.5/p/pymc/pymc-2.1beta.win32-py2.5.exe#md5=fdba7f86d41ab515f718b4a5889ed140 (from https://pypi.python.org/simple/pymc/); unknown archive format: .exe | |
| Skipping link https://pypi.python.org/packages/2.6/p/pymc/pymc-2.1beta-py2.6-macosx-10.6-universal.egg#md5=9c7513869c28d94fb618d8ef140a768e (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.6/p/pymc/pymc-2.1beta.win32-py2.6.exe#md5=50b8c75e52195bb174d9f75f4aa68d3e (from https://pypi.python.org/simple/pymc/); unknown archive format: .exe | |
| Skipping link https://pypi.python.org/packages/2.6/p/pymc/pymc-2.2-py2.6-linux-x86_64.egg#md5=a52da6da8002d6a65b845bad5da8f758 (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.7/p/pymc/pymc-2.2-py2.7-macosx-10.7-intel.egg#md5=057abfd3bafb37f95e4a899b186ea46b (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.7/p/pymc/pymc-2.2-py2.7-win32.egg#md5=789c865d6c05fa2bd523ca209894aa97 (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.7/p/pymc/pymc-2.2.win32-py2.7.exe#md5=d63c53afd042d080c773fe06a639b3ab (from https://pypi.python.org/simple/pymc/); unknown archive format: .exe | |
| Skipping link https://pypi.python.org/packages/2.7/p/pymc/pymc-2.3-py2.7-macosx-10.8-intel.egg#md5=fc827efb9be4b2d147eef6883a10bb47 (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.7/p/pymc/pymc-2.3.win32-py2.7.exe#md5=022cfb6e97a70dc6e92736407119f96c (from https://pypi.python.org/simple/pymc/); unknown archive format: .exe | |
| Found link https://pypi.python.org/packages/source/p/pymc/pymc-2.0.tar.gz#md5=ef673f20c89d845520516111c9c0db08 (from https://pypi.python.org/simple/pymc/), version: 2.0 | |
| Found link https://pypi.python.org/packages/source/p/pymc/pymc-2.1beta.zip#md5=265be6fe114f2d52359d59f2c8b912ff (from https://pypi.python.org/simple/pymc/), version: 2.1beta | |
| Found link https://pypi.python.org/packages/source/p/pymc/pymc-2.2.tar.gz#md5=f94439b23cbfaf89a1bafb97bfc71b85 (from https://pypi.python.org/simple/pymc/), version: 2.2 | |
| Found link https://pypi.python.org/packages/source/p/pymc/pymc-2.3.tar.gz#md5=03678068b552eecb16fc7aded39d125a (from https://pypi.python.org/simple/pymc/), version: 2.3 | |
| Ignoring link https://pypi.python.org/packages/source/p/pymc/pymc-2.1beta.zip#md5=265be6fe114f2d52359d59f2c8b912ff (from https://pypi.python.org/simple/pymc/), version 2.1beta is a pre-release (use --pre to allow). | |
| Using version 2.3 (newest of versions: 2.3, 2.2, 2.0) | |
| Downloading pymc-2.3.tar.gz (13.1MB): | |
| Downloading from URL https://pypi.python.org/packages/source/p/pymc/pymc-2.3.tar.gz#md5=03678068b552eecb16fc7aded39d125a (from https://pypi.python.org/simple/pymc/) | |
| ...Downloading pymc-2.3.tar.gz (13.1MB): 13.1MB downloaded | |
| Running setup.py egg_info for package pymc | |
| Running command python setup.py egg_info | |
| running egg_info | |
| running build_src | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| creating build | |
| creating build/src.macosx-10.9-x86_64-2.7 | |
| creating build/src.macosx-10.9-x86_64-2.7/pymc | |
| IOError: [Errno 2] No such file or directory: 'skip:ppnd7'. Skipping file "skip:ppnd7". | |
| updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(na)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(nb)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension (nmu)' to 'dimension(nmu)'. Ignoring. | |
| updatevars:gradlike: attempt to change 'dimension (na)' to 'dimension(na)'. Ignoring. | |
| rmbadname1: Replacing "index" with "index_bn". | |
| updatevars: "character curterms(20)*24" is mapped to "character curterms(20,24)" | |
| updatevars: "character septerms(20)*24" is mapped to "character septerms(20,24)" | |
| updatevars: "character tokens(maxtok)*(*)" is mapped to "character tokens(maxtok,(*))" | |
| rmbadname1: Replacing "index" with "index_bn". | |
| rmbadname1: Replacing "len" with "len_bn". | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between x, nx | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between w, x, nx | |
| sortvarnames: failed to compute dependencies because of cyclic dependencies between n, nx, bin0, delta, x, d | |
| "object of type 'builtin_function_or_method' has no len()" in evaluating 'len(ord)' (available names: []) | |
| Reading fortran codes... | |
| Reading file 'pymc/flib.f' (format:fix,strict) | |
| Reading file 'pymc/histogram.f' (format:fix,strict) | |
| Reading file 'pymc/flib_blas.f' (format:fix,strict) | |
| Reading file 'pymc/blas_wrap.f' (format:fix,strict) | |
| Reading file 'pymc/math.f' (format:fix,strict) | |
| Reading file 'pymc/gibbsit.f' (format:fix,strict) | |
| Line #1125 in pymc/gibbsit.f:" DOUBLE PRECISION INTENT(CACHE,HIDE), DIMENSION(2*ITERACNT) :: WORK" | |
| updatevars: attempt to change the type of "work" ("integer") to "double precision". Ignoring. | |
| Post-processing... | |
| Block: flib | |
| Block: symmetrize | |
| Block: logsum | |
| Block: logsum_cpx | |
| Block: combinationln | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/flib.f:expand_triangular | |
| vars2fortran: No typespec for argument "nf". | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/flib.f:expand_triangular | |
| vars2fortran: No typespec for argument "n". | |
| Block: expand_triangular | |
| Block: mod_to_circle | |
| Block: standardize | |
| Block: gammln | |
| Block: mvgammln | |
| Block: factrl | |
| Block: factln | |
| Block: normcdf | |
| Block: sn_like | |
| Block: rskewnorm | |
| Block: uniform_like | |
| Block: uniform_grad_x | |
| Block: uniform_grad_l | |
| Block: uniform_grad_u | |
| Block: duniform_like | |
| Block: exponweib | |
| Block: exponweib_gx | |
| Block: exponweib_gl | |
| Block: exponweib_gk | |
| Block: exponweib_ga | |
| Block: exponweib_gs | |
| Block: exponweib_ppf | |
| Block: constrain | |
| Block: poisson | |
| Block: poisson_gmu | |
| Block: trpoisson | |
| Block: trpoisson_gmu | |
| Block: t | |
| Block: t_grad_x | |
| Block: t_grad_nu | |
| Block: chi2_grad_nu | |
| Block: nct | |
| Block: multinomial | |
| Block: weibull | |
| Block: weibull_gx | |
| Block: weibull_ga | |
| Block: weibull_gb | |
| Block: logistic | |
| Block: normal | |
| Block: normal_grad_tau | |
| Block: normal_grad_x | |
| Block: normal_grad_mu | |
| Block: hnormal | |
| Block: hnormal_gradx | |
| Block: hnormal_gradtau | |
| Block: lognormal | |
| Block: lognormal_gradx | |
| Block: lognormal_gradmu | |
| Block: lognormal_gradtau | |
| Block: arlognormal | |
| Block: gev | |
| Block: gev_ppf | |
| Block: gamma | |
| Block: gamma_grad_x | |
| Block: gamma_grad_alpha | |
| Block: gamma_grad_beta | |
| Block: igamma | |
| Block: igamma_grad_x | |
| Block: igamma_grad_alpha | |
| Block: igamma_grad_beta | |
| Block: hyperg | |
| Block: geometric | |
| Block: geometric_gp | |
| Block: dirichlet | |
| Block: cauchy | |
| Block: cauchy_grad_x | |
| Block: cauchy_grad_a | |
| Block: cauchy_grad_b | |
| Block: negbin | |
| Block: negbin2 | |
| Block: negbin2_gmu | |
| Block: negbin2_ga | |
| Block: binomial | |
| Block: binomial_gp | |
| Block: bernoulli | |
| Block: bern_grad_p | |
| Block: beta_like | |
| Block: beta_grad_x | |
| Block: beta_grad_a | |
| Block: beta_grad_b | |
| Block: betabin_like | |
| Block: betabin_ga | |
| Block: betabin_gb | |
| Block: mvhyperg | |
| Block: dirmultinom | |
| Block: wishart | |
| Block: trace | |
| Block: gamfun | |
| Block: gammds | |
| Block: psi | |
| Block: gser | |
| Block: gcf | |
| Block: gammq | |
| Block: trans | |
| Block: matmult | |
| Block: dtrm | |
| Block: elgs | |
| Block: bico | |
| Block: chol | |
| Block: hermpoly | |
| Block: set_uniform | |
| Block: categorical | |
| Block: rcat | |
| Block: logit | |
| Block: invlogit | |
| Block: stukel_logit | |
| Block: stukel_invlogit | |
| Block: vonmises | |
| Block: pareto | |
| Block: truncated_pareto | |
| Block: fixed_binsize | |
| Block: weighted_fixed_binsize | |
| Block: fixed_binsize_nd | |
| {'attrspec': ['dimension(n)']} | |
| In: :flib:pymc/histogram.f:qsorti | |
| vars2fortran: No typespec for argument "ord". | |
| Block: qsorti | |
| Block: checksymm | |
| Block: chol_mvnorm | |
| Block: cov_mvnorm | |
| Block: prec_mvnorm | |
| Block: blas_wishart | |
| Block: blas_wishart_cov | |
| {'attrspec': ['intent(hide)']} | |
| In: :flib:pymc/blas_wrap.f:dcopy_wrap | |
| vars2fortran: No typespec for argument "nx". | |
| Block: dcopy_wrap | |
| Block: dtrmm_wrap | |
| Block: dtrsm_wrap | |
| Block: dpotrf_wrap | |
| Block: dchdc_wrap | |
| Block: dpotrs_wrap | |
| Block: ppnd16 | |
| Block: calerf | |
| Block: derf | |
| Block: derfc | |
| Block: derfcx | |
| Block: gibbsit | |
| Block: matinput | |
| Block: vecinput | |
| Block: oneparse | |
| Block: gibbmain | |
| Block: empquant | |
| Block: dichot | |
| Block: thin | |
| Block: mctest | |
| Block: indtest | |
| Block: mcest | |
| Block: ppnd7 | |
| Block: ssort | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "flib"... | |
| Constructing wrapper function "symmetrize"... | |
| symmetrize(c,[cmin,cmax]) | |
| Constructing wrapper function "logsum"... | |
| s = logsum(x) | |
| Constructing wrapper function "logsum_cpx"... | |
| s = logsum_cpx(x) | |
| Creating wrapper for Fortran function "combinationln"("combinationln")... | |
| Constructing wrapper function "combinationln"... | |
| combinationln = combinationln(n,k) | |
| Constructing wrapper function "expand_triangular"... | |
| t = expand_triangular(d,f) | |
| Constructing wrapper function "mod_to_circle"... | |
| mx = mod_to_circle(x,u,l) | |
| Constructing wrapper function "standardize"... | |
| z = standardize(x,loc,scale) | |
| Creating wrapper for Fortran function "gammln"("gammln")... | |
| Constructing wrapper function "gammln"... | |
| gammln = gammln(xx) | |
| Creating wrapper for Fortran function "mvgammln"("mvgammln")... | |
| Constructing wrapper function "mvgammln"... | |
| mvgammln = mvgammln(x,k) | |
| Creating wrapper for Fortran function "factrl"("factrl")... | |
| Constructing wrapper function "factrl"... | |
| factrl = factrl(n) | |
| Creating wrapper for Fortran function "factln"("factln")... | |
| Constructing wrapper function "factln"... | |
| factln = factln(n) | |
| Constructing wrapper function "normcdf"... | |
| normcdf(x) | |
| Constructing wrapper function "sn_like"... | |
| like = sn_like(x,mu,tau,alph) | |
| Constructing wrapper function "rskewnorm"... | |
| x = rskewnorm(nx,mu,tau,alph,rn) | |
| Constructing wrapper function "uniform_like"... | |
| like = uniform_like(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_x"... | |
| gradxlike = uniform_grad_x(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_l"... | |
| gradllike = uniform_grad_l(x,lower,upper) | |
| Constructing wrapper function "uniform_grad_u"... | |
| gradulike = uniform_grad_u(x,lower,upper) | |
| Constructing wrapper function "duniform_like"... | |
| like = duniform_like(x,lower,upper) | |
| Constructing wrapper function "exponweib"... | |
| like = exponweib(x,a,c,loc,scale) | |
| Constructing wrapper function "exponweib_gx"... | |
| gradlike = exponweib_gx(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_gl"... | |
| gradlike = exponweib_gl(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_gk"... | |
| gradlike = exponweib_gk(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_ga"... | |
| gradlike = exponweib_ga(x,alpha,k,loc,scale,[nk]) | |
| Constructing wrapper function "exponweib_gs"... | |
| gradlike = exponweib_gs(x,alpha,k,loc,scale) | |
| Constructing wrapper function "exponweib_ppf"... | |
| ppf = exponweib_ppf(q,a,c) | |
| Constructing wrapper function "constrain"... | |
| pass = constrain(x,a,b,allow_equal) | |
| Constructing wrapper function "poisson"... | |
| like = poisson(x,mu) | |
| Constructing wrapper function "poisson_gmu"... | |
| gradlike = poisson_gmu(x,mu) | |
| Constructing wrapper function "trpoisson"... | |
| like = trpoisson(x,mu,k) | |
| Constructing wrapper function "trpoisson_gmu"... | |
| gradlike = trpoisson_gmu(x,mu,k) | |
| Constructing wrapper function "t"... | |
| like = t(x,nu) | |
| Constructing wrapper function "t_grad_x"... | |
| gradlikex = t_grad_x(x,nu) | |
| Constructing wrapper function "t_grad_nu"... | |
| gradlikenu = t_grad_nu(x,nu) | |
| Constructing wrapper function "chi2_grad_nu"... | |
| gradlikenu = chi2_grad_nu(x,nu) | |
| Constructing wrapper function "nct"... | |
| like = nct(x,mu,lam,nu) | |
| Constructing wrapper function "multinomial"... | |
| like = multinomial(x,n,p) | |
| Constructing wrapper function "weibull"... | |
| like = weibull(x,alpha,beta) | |
| Constructing wrapper function "weibull_gx"... | |
| gradlike = weibull_gx(x,alpha,beta) | |
| Constructing wrapper function "weibull_ga"... | |
| gradlike = weibull_ga(x,alpha,beta) | |
| Constructing wrapper function "weibull_gb"... | |
| gradlike = weibull_gb(x,alpha,beta) | |
| Constructing wrapper function "logistic"... | |
| like = logistic(x,mu,tau) | |
| Constructing wrapper function "normal"... | |
| like = normal(x,mu,tau) | |
| Constructing wrapper function "normal_grad_tau"... | |
| grad_tau_like = normal_grad_tau(x,mu,tau) | |
| Constructing wrapper function "normal_grad_x"... | |
| grad_x_like = normal_grad_x(x,mu,tau) | |
| Constructing wrapper function "normal_grad_mu"... | |
| gradmulike = normal_grad_mu(x,mu,tau) | |
| Constructing wrapper function "hnormal"... | |
| like = hnormal(x,tau) | |
| Constructing wrapper function "hnormal_gradx"... | |
| gradlike = hnormal_gradx(x,tau) | |
| Constructing wrapper function "hnormal_gradtau"... | |
| gradlike = hnormal_gradtau(x,tau) | |
| Constructing wrapper function "lognormal"... | |
| like = lognormal(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradx"... | |
| gradlike = lognormal_gradx(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradmu"... | |
| gradlike = lognormal_gradmu(x,mu,tau) | |
| Constructing wrapper function "lognormal_gradtau"... | |
| gradlike = lognormal_gradtau(x,mu,tau) | |
| Constructing wrapper function "arlognormal"... | |
| like = arlognormal(x,mu,sigma,rho,beta) | |
| Constructing wrapper function "gev"... | |
| like = gev(x,xi,mu,sigma) | |
| Constructing wrapper function "gev_ppf"... | |
| ppf = gev_ppf(q,xi) | |
| Constructing wrapper function "gamma"... | |
| like = gamma(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_x"... | |
| gradxlike = gamma_grad_x(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_alpha"... | |
| gradalphalike = gamma_grad_alpha(x,alpha,beta) | |
| Constructing wrapper function "gamma_grad_beta"... | |
| gradbetalike = gamma_grad_beta(x,alpha,beta) | |
| Constructing wrapper function "igamma"... | |
| like = igamma(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_x"... | |
| gradxlike = igamma_grad_x(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_alpha"... | |
| gradalphalike = igamma_grad_alpha(x,alpha,beta) | |
| Constructing wrapper function "igamma_grad_beta"... | |
| gradbetalike = igamma_grad_beta(x,alpha,beta) | |
| Constructing wrapper function "hyperg"... | |
| like = hyperg(x,draws,success,total) | |
| Constructing wrapper function "geometric"... | |
| like = geometric(x,p) | |
| Constructing wrapper function "geometric_gp"... | |
| gradlike = geometric_gp(x,p) | |
| Constructing wrapper function "dirichlet"... | |
| like = dirichlet(x,theta) | |
| Constructing wrapper function "cauchy"... | |
| like = cauchy(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_x"... | |
| gradlike = cauchy_grad_x(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_a"... | |
| gradlike = cauchy_grad_a(x,alpha,beta) | |
| Constructing wrapper function "cauchy_grad_b"... | |
| gradlike = cauchy_grad_b(x,alpha,beta) | |
| Constructing wrapper function "negbin"... | |
| like = negbin(x,r,p) | |
| Constructing wrapper function "negbin2"... | |
| like = negbin2(x,mu,a) | |
| Constructing wrapper function "negbin2_gmu"... | |
| gradlike = negbin2_gmu(x,mu,alpha) | |
| Constructing wrapper function "negbin2_ga"... | |
| gradlike = negbin2_ga(x,mu,alpha) | |
| Constructing wrapper function "binomial"... | |
| like = binomial(x,n,p) | |
| Constructing wrapper function "binomial_gp"... | |
| gradlike = binomial_gp(x,n,p) | |
| Constructing wrapper function "bernoulli"... | |
| like = bernoulli(x,p) | |
| Constructing wrapper function "bern_grad_p"... | |
| grad_like = bern_grad_p(x,p) | |
| Constructing wrapper function "beta_like"... | |
| like = beta_like(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_x"... | |
| gradlikex = beta_grad_x(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_a"... | |
| gradlikea = beta_grad_a(x,alpha,beta) | |
| Constructing wrapper function "beta_grad_b"... | |
| gradlikeb = beta_grad_b(x,alpha,beta) | |
| Constructing wrapper function "betabin_like"... | |
| like = betabin_like(x,alpha,beta,n) | |
| Constructing wrapper function "betabin_ga"... | |
| gradlike = betabin_ga(x,alpha,beta,n) | |
| Constructing wrapper function "betabin_gb"... | |
| gradlike = betabin_gb(x,alpha,beta,n) | |
| Constructing wrapper function "mvhyperg"... | |
| like = mvhyperg(x,color) | |
| Constructing wrapper function "dirmultinom"... | |
| like = dirmultinom(x,theta) | |
| Constructing wrapper function "wishart"... | |
| like = wishart(x,n,sigma) | |
| Constructing wrapper function "trace"... | |
| trace(mat,tr,[k]) | |
| Constructing wrapper function "gamfun"... | |
| gx = gamfun(xx) | |
| Creating wrapper for Fortran function "gammds"("gammds")... | |
| Constructing wrapper function "gammds"... | |
| gammds = gammds(y,p,ifault) | |
| Creating wrapper for Fortran function "psi"("psi")... | |
| Constructing wrapper function "psi"... | |
| psi = psi(x) | |
| Constructing wrapper function "gser"... | |
| gser(gamser,a,x,gln) | |
| Constructing wrapper function "gcf"... | |
| gcf(gammcf,a,x,gln) | |
| Creating wrapper for Fortran function "gammq"("gammq")... | |
| Constructing wrapper function "gammq"... | |
| gammq = gammq(a,x) | |
| Constructing wrapper function "trans"... | |
| tmat = trans(mat) | |
| Constructing wrapper function "matmult"... | |
| prod = matmult(mat1,mat2) | |
| Constructing wrapper function "dtrm"... | |
| d = dtrm(a) | |
| Constructing wrapper function "elgs"... | |
| elgs(a,indx,[n]) | |
| Creating wrapper for Fortran function "bico"("bico")... | |
| Constructing wrapper function "bico"... | |
| bico = bico(n,k) | |
| Constructing wrapper function "chol"... | |
| c = chol(a,[n]) | |
| Constructing wrapper function "hermpoly"... | |
| cx = hermpoly(n,x) | |
| Constructing wrapper function "set_uniform"... | |
| set_uniform(seed1,seed2) | |
| Constructing wrapper function "categorical"... | |
| like = categorical(x,p) | |
| Constructing wrapper function "rcat"... | |
| s = rcat(p,rands) | |
| Constructing wrapper function "logit"... | |
| ltheta = logit(theta) | |
| Constructing wrapper function "invlogit"... | |
| theta = invlogit(ltheta) | |
| Constructing wrapper function "stukel_logit"... | |
| ltheta = stukel_logit(theta,a1,a2,[overwrite_theta]) | |
| Constructing wrapper function "stukel_invlogit"... | |
| theta = stukel_invlogit(ltheta,a1,a2,[overwrite_ltheta]) | |
| Constructing wrapper function "vonmises"... | |
| like = vonmises(x,mu,kappa) | |
| Constructing wrapper function "pareto"... | |
| like = pareto(x,alpha,m) | |
| Constructing wrapper function "truncated_pareto"... | |
| like = truncated_pareto(x,alpha,m,b) | |
| Constructing wrapper function "fixed_binsize"... | |
| h = fixed_binsize(x,bin0,delta,n) | |
| Constructing wrapper function "weighted_fixed_binsize"... | |
| h = weighted_fixed_binsize(x,w,bin0,delta,n) | |
| Constructing wrapper function "fixed_binsize_nd"... | |
| count = fixed_binsize_nd(x,bin0,delta,n,nc) | |
| Constructing wrapper function "qsorti"... | |
| qsorti(ord,a,[n]) | |
| Constructing wrapper function "checksymm"... | |
| cs = checksymm(x) | |
| Constructing wrapper function "chol_mvnorm"... | |
| like = chol_mvnorm(x,mu,sig,[overwrite_x,overwrite_mu]) | |
| Constructing wrapper function "cov_mvnorm"... | |
| like = cov_mvnorm(x,mu,c,[overwrite_x,overwrite_mu,overwrite_c]) | |
| Constructing wrapper function "prec_mvnorm"... | |
| like = prec_mvnorm(x,mu,tau,[overwrite_x,overwrite_mu,overwrite_tau]) | |
| Constructing wrapper function "blas_wishart"... | |
| like = blas_wishart(x,n,t,[overwrite_x,overwrite_t]) | |
| Constructing wrapper function "blas_wishart_cov"... | |
| like = blas_wishart_cov(x,n,v,[overwrite_x,overwrite_v]) | |
| Constructing wrapper function "dcopy_wrap"... | |
| dcopy_wrap(x,y) | |
| Constructing wrapper function "dtrmm_wrap"... | |
| dtrmm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dtrsm_wrap"... | |
| dtrsm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dpotrf_wrap"... | |
| info = dpotrf_wrap(a) | |
| Constructing wrapper function "dchdc_wrap"... | |
| piv,info = dchdc_wrap(a) | |
| Constructing wrapper function "dpotrs_wrap"... | |
| info = dpotrs_wrap(chol_fac,b,[uplo]) | |
| Creating wrapper for Fortran function "ppnd16"("ppnd16")... | |
| Constructing wrapper function "ppnd16"... | |
| ppnd16 = ppnd16(p,ifault) | |
| Constructing wrapper function "calerf"... | |
| calerf(arg,result,jint) | |
| Creating wrapper for Fortran function "derf"("derf")... | |
| Constructing wrapper function "derf"... | |
| derf = derf(x) | |
| Creating wrapper for Fortran function "derfc"("derfc")... | |
| Constructing wrapper function "derfc"... | |
| derfc = derfc(x) | |
| Creating wrapper for Fortran function "derfcx"("derfcx")... | |
| Constructing wrapper function "derfcx"... | |
| derfcx = derfcx(x) | |
| Constructing wrapper function "matinput"... | |
| matinput(uid,matout,rowused,colused,r15,[rowmax,colmax]) | |
| Constructing wrapper function "vecinput"... | |
| vecinput(uid,vecout,vecused,r15,[vecmax]) | |
| Constructing wrapper function "oneparse"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '(*)' | |
| oneparse(instring,delimit,tokens,tokcnt,r15,[maxtok]) | |
| Constructing wrapper function "gibbmain"... | |
| nmin,kthin,nburn,nprec,kmind = gibbmain(original,q,r,s,epsilon) | |
| Creating wrapper for Fortran function "empquant"("empquant")... | |
| Constructing wrapper function "empquant"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '*' | |
| empquant = empquant(data,q,work,[iteracnt]) | |
| Constructing wrapper function "dichot"... | |
| dichot(data,cutpt,zt,[iteracnt]) | |
| Constructing wrapper function "thin"... | |
| thin(series,kthin,result,thincnt,[iteracnt]) | |
| Constructing wrapper function "mctest"... | |
| mctest(data,g2,bic,[datacnt]) | |
| Constructing wrapper function "indtest"... | |
| indtest(data,g2,bic,[datacnt]) | |
| Constructing wrapper function "mcest"... | |
| mcest(data,alpha,beta,[datacnt]) | |
| Creating wrapper for Fortran function "ppnd7"("ppnd7")... | |
| Constructing wrapper function "ppnd7"... | |
| ppnd7 = ppnd7(p,ifault) | |
| Constructing wrapper function "ssort"... | |
| ssort(x,y,kflag,[n]) | |
| Constructing COMMON block support for "unif_seeds"... | |
| s1,s2 | |
| Wrote C/API module "flib" to file "build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c" | |
| Fortran 77 wrappers are saved to "build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| copying /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.c -> build/src.macosx-10.9-x86_64-2.7 | |
| copying /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.h -> build/src.macosx-10.9-x86_64-2.7 | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c | |
| creating build/src.macosx-10.9-x86_64-2.7/pymc/gp | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/linalg_utils.f' (format:fix,strict) | |
| Reading file 'pymc/blas_wrap.f' (format:fix,strict) | |
| Post-processing... | |
| Block: linalg_utils | |
| Block: remove_duplicates | |
| Block: check_repeats | |
| Block: diag_call | |
| Block: cov_fun | |
| {'attrspec': ['intent(hide)']} | |
| In: :linalg_utils:pymc/gp/linalg_utils.f:basis_diag_call | |
| vars2fortran: No typespec for argument "nbas". | |
| Block: basis_diag_call | |
| Block: gp_array_logp | |
| Block: asqs | |
| {'attrspec': ['intent(hide)']} | |
| In: :linalg_utils:pymc/blas_wrap.f:dcopy_wrap | |
| vars2fortran: No typespec for argument "nx". | |
| Block: dcopy_wrap | |
| Block: dtrmm_wrap | |
| Block: dtrsm_wrap | |
| Block: dpotrf_wrap | |
| Block: dchdc_wrap | |
| Block: dpotrs_wrap | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Constructing call-back function "cb_cov_fun_in_diag_call__user__routines" | |
| def cov_fun(xe): return q | |
| Building module "linalg_utils"... | |
| Constructing wrapper function "remove_duplicates"... | |
| nr,rf,rt,nu,xu,ui = remove_duplicates(x) | |
| Constructing wrapper function "check_repeats"... | |
| f,new_indices,n_new_indices = check_repeats(x,x_sofar,f_sofar) | |
| Constructing wrapper function "diag_call"... | |
| v = diag_call(x,cov_fun,[cov_fun_extra_args]) | |
| Constructing wrapper function "basis_diag_call"... | |
| v = basis_diag_call(basis_x) | |
| Constructing wrapper function "gp_array_logp"... | |
| like = gp_array_logp(x,mu,sig,[overwrite_x,overwrite_mu]) | |
| Constructing wrapper function "asqs"... | |
| asqs(c,s,[cmin,cmax]) | |
| Constructing wrapper function "dcopy_wrap"... | |
| dcopy_wrap(x,y) | |
| Constructing wrapper function "dtrmm_wrap"... | |
| dtrmm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dtrsm_wrap"... | |
| dtrsm_wrap(a,b,side,transa,uplo,alpha) | |
| Constructing wrapper function "dpotrf_wrap"... | |
| info = dpotrf_wrap(a) | |
| Constructing wrapper function "dchdc_wrap"... | |
| piv,info = dchdc_wrap(a) | |
| Constructing wrapper function "dpotrs_wrap"... | |
| info = dpotrs_wrap(chol_fac,b,[uplo]) | |
| Wrote C/API module "linalg_utils" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/incomplete_chol.f' (format:fix,strict) | |
| Post-processing... | |
| Block: incomplete_chol | |
| Block: ichol_continue | |
| Block: rowfun | |
| Block: ichol | |
| Block: rowfun | |
| {'attrspec': ['intent(hide)']} | |
| In: :incomplete_chol:pymc/gp/incomplete_chol.f:ichol_basis | |
| vars2fortran: No typespec for argument "n_nug". | |
| Block: ichol_basis | |
| Block: ichol_full | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Constructing call-back function "cb_rowfun_in_ichol_continue__user__routines" | |
| def rowfun(itot,x,rowvec): return | |
| Constructing call-back function "cb_rowfun_in_ichol__user__routines" | |
| def rowfun(i,x,rowvec): return | |
| Building module "incomplete_chol"... | |
| Constructing wrapper function "ichol_continue"... | |
| m,piv = ichol_continue(sig,diag,piv,reltol,x,rowfun,mold,[overwrite_x,rowfun_extra_args]) | |
| Constructing wrapper function "ichol"... | |
| sig,m,piv = ichol(diag,reltol,x,rowfun,rl,[overwrite_x,rowfun_extra_args]) | |
| Constructing wrapper function "ichol_basis"... | |
| sig,p,m = ichol_basis(basis,nug,reltol) | |
| Constructing wrapper function "ichol_full"... | |
| sig,m,p = ichol_full(c,reltol) | |
| Wrote C/API module "incomplete_chol" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c | |
| creating build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/cov_funs/isotropic_cov_funs.f' (format:fix,strict) | |
| Reading file 'blas/BLAS/dscal.f' (format:fix,strict) | |
| Post-processing... | |
| Block: isotropic_cov_funs | |
| Block: imul | |
| Block: symmetrize | |
| Block: matern | |
| Block: nsmatrn | |
| Block: stein_spatiotemporal | |
| Block: nsst | |
| Block: gaussian | |
| Block: exponential | |
| Block: brownian | |
| Block: frac_brownian | |
| Block: pow_exp | |
| Block: sphere | |
| Block: quadratic | |
| Block: dgamma | |
| Block: rkbesl | |
| Block: dscal | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "isotropic_cov_funs"... | |
| Constructing wrapper function "imul"... | |
| imul(c,a,[cmin,cmax,symm]) | |
| Constructing wrapper function "symmetrize"... | |
| symmetrize(c,[cmin,cmax]) | |
| Constructing wrapper function "matern"... | |
| matern(c,diff_degree,[cmin,cmax,symm]) | |
| Constructing wrapper function "nsmatrn"... | |
| nsmatrn(c,ddx,ddy,hx,hy,nmax,[cmin,cmax,symm]) | |
| Constructing wrapper function "stein_spatiotemporal"... | |
| stein_spatiotemporal(c,gt,origin_val,[cmin,cmax,symm]) | |
| Constructing wrapper function "nsst"... | |
| nsst(c,gt,origin_val,hx,hy,[cmin,cmax,symm]) | |
| Constructing wrapper function "gaussian"... | |
| gaussian(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "exponential"... | |
| exponential(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "brownian"... | |
| brownian(c,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "frac_brownian"... | |
| frac_brownian(c,x,y,h,[cmin,cmax,symm]) | |
| Constructing wrapper function "pow_exp"... | |
| pow_exp(c,pow,[cmin,cmax,symm]) | |
| Constructing wrapper function "sphere"... | |
| sphere(c,[cmin,cmax,symm]) | |
| Constructing wrapper function "quadratic"... | |
| quadratic(c,phi,[cmin,cmax,symm]) | |
| Creating wrapper for Fortran function "dgamma"("dgamma")... | |
| Constructing wrapper function "dgamma"... | |
| dgamma = dgamma(x) | |
| Constructing wrapper function "rkbesl"... | |
| bk = rkbesl(x,alpha,nb,ize,ncalc) | |
| Constructing wrapper function "dscal"... | |
| getarrdims:warning: assumed shape array, using 0 instead of '*' | |
| dscal(n,da,dx,incx) | |
| Wrote C/API module "isotropic_cov_funs" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c" | |
| Fortran 77 wrappers are saved to "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| f2py:> build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c | |
| Reading fortran codes... | |
| Reading file 'pymc/gp/cov_funs/distances.f' (format:fix,strict) | |
| Post-processing... | |
| Block: distances | |
| Block: euclidean | |
| Block: geographic | |
| Block: paniso_geo_rad | |
| Block: aniso_geo_rad | |
| Post-processing (stage 2)... | |
| Building modules... | |
| Building module "distances"... | |
| Constructing wrapper function "euclidean"... | |
| euclidean(d,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "geographic"... | |
| geographic(d,x,y,[cmin,cmax,symm]) | |
| Constructing wrapper function "paniso_geo_rad"... | |
| paniso_geo_rad(d,x,y,ctrs,scals,[cmin,cmax,symm]) | |
| Constructing wrapper function "aniso_geo_rad"... | |
| aniso_geo_rad(d,x,y,inc,ecc,[cmin,cmax,symm]) | |
| Wrote C/API module "distances" to file "build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c" | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| creating pip-egg-info/pymc.egg-info | |
| writing pip-egg-info/pymc.egg-info/PKG-INFO | |
| writing top-level names to pip-egg-info/pymc.egg-info/top_level.txt | |
| writing dependency_links to pip-egg-info/pymc.egg-info/dependency_links.txt | |
| writing pip-egg-info/pymc.egg-info/PKG-INFO | |
| writing top-level names to pip-egg-info/pymc.egg-info/top_level.txt | |
| writing dependency_links to pip-egg-info/pymc.egg-info/dependency_links.txt | |
| writing manifest file 'pip-egg-info/pymc.egg-info/SOURCES.txt' | |
| warning: manifest_maker: standard file '-c' not found | |
| reading manifest file 'pip-egg-info/pymc.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| warning: no files found matching 'README.txt' | |
| warning: no files found matching 'INSTALL.txt' | |
| warning: no files found matching 'docs/UserGuide.pdf' | |
| writing manifest file 'pip-egg-info/pymc.egg-info/SOURCES.txt' | |
| Source in /private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc has version 2.3, which satisfies requirement pymc | |
| Installing collected packages: pymc | |
| Running setup.py install for pymc | |
| Running command /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import setuptools;__file__='/private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-vhJM11-record/install-record.txt --single-version-externally-managed | |
| running install | |
| running build | |
| running config_cc | |
| unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
| running config_fc | |
| unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
| running build_src | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| running build_py | |
| creating build/lib.macosx-10.9-x86_64-2.7 | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/calc_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CircularStochastic.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CommonDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/datatypes.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/decorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/diagnostics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/InstantiationDecorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Matplot.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Node.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NormalApproximation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NumpyDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/progressbar.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/PyMCObjects.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/ScipyDistributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/six.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/StepMethods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/threadpool.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/base.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5ea.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/no_trace.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/pickle.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/ram.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/sqlite.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/txt.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/custom_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_gof.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_linear.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_null.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/gelman_bioassay.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma_data.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/weibull_fit.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/zip.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/covparams.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mesh_choice.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/PyMCmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/realizations.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/objectmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_adaptive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_AM.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_binary_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_convergence.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_database.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_GP_MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_gradients.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_instantiation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_interactive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_MCMCSampler.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_norm_approx.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_special_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/BasisCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Covariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/FullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gp_submodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gpplots.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/GPutils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/step_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/bases.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/brownian.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/cov_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/nsmatern.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| running build_ext | |
| customize UnixCCompiler | |
| customize UnixCCompiler using build_ext | |
| customize Gnu95FCompiler | |
| Found executable /usr/local/bin/gfortran | |
| customize Gnu95FCompiler | |
| customize Gnu95FCompiler using build_ext | |
| building 'pymc.flib' extension | |
| compiling C sources | |
| C compiler: clang -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/opt/zlib/include | |
| creating build/temp.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/cephes | |
| creating build/temp.macosx-10.9-x86_64-2.7/build | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| extra options: '-msse3' | |
| clang: build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:18: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16817:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds] | |
| d = shape(x,2); | |
| ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:86:24: note: expanded from macro 'shape' | |
| #define shape(var,dim) var ## _Dims[dim] | |
| ^ | |
| <scratch space>:394:1: note: expanded from here | |
| x_Dims | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16718:3: note: array 'x_Dims' declared here | |
| npy_intp x_Dims[2] = {-1, -1}; | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:181:12: warning: unused function 'f2py_size' [-Wunused-function] | |
| static int f2py_size(PyArrayObject* var, ...) | |
| ^ | |
| 3 warnings generated. | |
| clang: build/src.macosx-10.9-x86_64-2.7/fortranobject.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.c:2: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] | |
| if ((fp->defs[i].func==NULL)) { | |
| ~~~~~~~~~~~~~~~~^~~~~~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: remove extraneous parentheses around the comparison to silence this warning | |
| if ((fp->defs[i].func==NULL)) { | |
| ~ ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: use '=' to turn this equality comparison into an assignment | |
| if ((fp->defs[i].func==NULL)) { | |
| ^~ | |
| = | |
| 2 warnings generated. | |
| clang: cephes/chbevl.c | |
| clang: cephes/i0.c | |
| clang: cephes/c2f.c | |
| compiling Fortran sources | |
| Fortran f77 compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran f90 compiler: /usr/local/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran fix compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| creating build/temp.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| gfortran:f77: pymc/flib.f | |
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| Warning: Nonconforming tab character in column 1 of line 4288 | |
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| Warning: Nonconforming tab character in column 1 of line 4290 | |
| Warning: Nonconforming tab character in column 1 of line 4342 | |
| Warning: Nonconforming tab character in column 1 of line 4343 | |
| Warning: Nonconforming tab character in column 1 of line 4344 | |
| Warning: Nonconforming tab character in column 1 of line 4346 | |
| Warning: Nonconforming tab character in column 1 of line 4347 | |
| Warning: Nonconforming tab character in column 1 of line 4348 | |
| Warning: Nonconforming tab character in column 1 of line 4350 | |
| Warning: Nonconforming tab character in column 1 of line 4351 | |
| Warning: Nonconforming tab character in column 1 of line 4352 | |
| Warning: Nonconforming tab character in column 1 of line 4354 | |
| Warning: Nonconforming tab character in column 1 of line 4355 | |
| Warning: Nonconforming tab character in column 1 of line 4356 | |
| Warning: Nonconforming tab character in column 1 of line 4620 | |
| Warning: Nonconforming tab character in column 1 of line 4622 | |
| Warning: Nonconforming tab character in column 1 of line 4623 | |
| Warning: Nonconforming tab character in column 1 of line 4624 | |
| Warning: Nonconforming tab character in column 1 of line 4626 | |
| Warning: Nonconforming tab character in column 1 of line 4628 | |
| Warning: Nonconforming tab character in column 1 of line 4630 | |
| Warning: Nonconforming tab character in column 1 of line 4632 | |
| Warning: Nonconforming tab character in column 1 of line 4633 | |
| Warning: Nonconforming tab character in column 1 of line 4634 | |
| Warning: Nonconforming tab character in column 1 of line 4635 | |
| Warning: Nonconforming tab character in column 1 of line 4637 | |
| Warning: Nonconforming tab character in column 1 of line 4638 | |
| Warning: Nonconforming tab character in column 1 of line 4639 | |
| Warning: Nonconforming tab character in column 1 of line 4640 | |
| Warning: Nonconforming tab character in column 1 of line 4642 | |
| Warning: Nonconforming tab character in column 1 of line 4643 | |
| Warning: Nonconforming tab character in column 1 of line 4644 | |
| Warning: Nonconforming tab character in column 1 of line 4645 | |
| Warning: Nonconforming tab character in column 1 of line 4646 | |
| pymc/flib.f:316.55: | |
| DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like | |
| 1 | |
| Warning: Unused variable 'd_now' declared at (1) | |
| pymc/flib.f:314.42: | |
| INTEGER i, nx, nalph, nmu, ntau, tnx | |
| 1 | |
| Warning: Unused variable 'tnx' declared at (1) | |
| pymc/flib.f:442.71: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'gradxlike' at (1) | |
| pymc/flib.f:461.40: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'high' declared at (1) | |
| pymc/flib.f:458.36: | |
| INTEGER n, nlower, nupper, i | |
| 1 | |
| Warning: Unused variable 'i' declared at (1) | |
| pymc/flib.f:461.29: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'like' declared at (1) | |
| pymc/flib.f:461.34: | |
| DOUBLE PRECISION like, low, high | |
| 1 | |
| Warning: Unused variable 'low' declared at (1) | |
| pymc/flib.f:442.39: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'lower' at (1) | |
| pymc/flib.f:442.45: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'upper' at (1) | |
| pymc/flib.f:442.33: | |
| subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) | |
| 1 | |
| Warning: Unused dummy argument 'x' at (1) | |
| pymc/flib.f:692.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:760.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:834.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:906.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:976.41: | |
| DOUBLE PRECISION aa, cc, sigma, pdf | |
| 1 | |
| Warning: Unused variable 'pdf' declared at (1) | |
| pymc/flib.f:1186.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1185.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1185.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1300.55: | |
| DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf | |
| 1 | |
| Warning: Unused variable 'cdf' declared at (1) | |
| pymc/flib.f:1302.29: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:1302.36: | |
| DOUBLE PRECISION factln, gammq | |
| 1 | |
| Warning: Unused variable 'gammq' declared at (1) | |
| pymc/flib.f:1301.59: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumcdf' declared at (1) | |
| pymc/flib.f:1301.51: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumfact' declared at (1) | |
| pymc/flib.f:1301.27: | |
| DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf | |
| 1 | |
| Warning: Unused variable 'sumx' declared at (1) | |
| pymc/flib.f:1402.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2154.40: | |
| DOUBLE PRECISION gradlike(n), grad | |
| 1 | |
| Warning: Unused variable 'grad' declared at (1) | |
| pymc/flib.f:2665.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2728.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2793.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2903.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:2959.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3021.29: | |
| DOUBLE PRECISION gammln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3396.58: | |
| DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike | |
| 1 | |
| Warning: Unused variable 'glike' declared at (1) | |
| pymc/flib.f:3646.37: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3646.29: | |
| DOUBLE PRECISION gammln, factln | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3706.37: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:3706.29: | |
| DOUBLE PRECISION gammln, factln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:3836.29: | |
| DOUBLE PRECISION factln | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:4039.26: | |
| DOUBLE PRECISION psi | |
| 1 | |
| Warning: Unused variable 'psi' declared at (1) | |
| pymc/flib.f:4266.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:4332.29: | |
| DOUBLE PRECISION gammln, psi | |
| 1 | |
| Warning: Unused variable 'gammln' declared at (1) | |
| pymc/flib.f:5184.35: | |
| DOUBLE PRECISION like, factln, infinity, sump | |
| 1 | |
| Warning: Unused variable 'factln' declared at (1) | |
| pymc/flib.f:5186.23: | |
| INTEGER i,j,n_tmp | |
| 1 | |
| Warning: Unused variable 'n_tmp' declared at (1) | |
| pymc/flib.f:5434.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5488.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5481.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f:5535.25: | |
| DOUBLE PRECISION i0 | |
| 1 | |
| Warning: Unused variable 'i0' declared at (1) | |
| pymc/flib.f:5528.26: | |
| DOUBLE PRECISION tmp | |
| 1 | |
| Warning: Unused variable 'tmp' declared at (1) | |
| pymc/flib.f: In function 'elgs': | |
| pymc/flib.f:4882:0: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| K = I | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gl': | |
| pymc/flib.f:778:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| pymc/flib.f: In function 'exponweib_gs': | |
| pymc/flib.f:994:0: warning: 'nc' may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| do i = 1,nc | |
| ^ | |
| gfortran:f77: pymc/histogram.f | |
| gfortran:f77: pymc/flib_blas.f | |
| pymc/flib_blas.f:202.25: | |
| DOUBLE PRECISION PI | |
| 1 | |
| Warning: Unused variable 'pi' declared at (1) | |
| gfortran:f77: pymc/blas_wrap.f | |
| gfortran:f77: pymc/math.f | |
| pymc/math.f:396.6: | |
| DOUBLE PRECISION FUNCTION DERF(X) | |
| 1 | |
| Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| pymc/math.f:417.6: | |
| DOUBLE PRECISION FUNCTION DERFC(X) | |
| 1 | |
| Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. | |
| gfortran:f77: pymc/gibbsit.f | |
| pymc/gibbsit.f:2160.5: | |
| 215 IF (R .GT. .5898437) GO TO 220 | |
| 1 | |
| Warning: Label 215 at (1) defined but not used | |
| pymc/gibbsit.f:2077.5: | |
| 115 IF (R .GT. .5898437) GO TO 120 | |
| 1 | |
| Warning: Label 115 at (1) defined but not used | |
| pymc/gibbsit.f:2064.5: | |
| 15 IF (KFLAG.GE.1) GO TO 30 | |
| 1 | |
| Warning: Label 15 at (1) defined but not used | |
| pymc/gibbsit.f:1204.48: | |
| cutpt = empquant(original,iteracnt,qhat,work) | |
| 1 | |
| Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) | |
| gfortran:f77: build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f | |
| /usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| Undefined symbols for architecture x86_64: | |
| "_PyArg_ParseTupleAndKeywords", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyCObject_AsVoidPtr", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_AsVoidPtr in fortranobject.o | |
| "_PyCObject_FromVoidPtr", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| _F2PyCapsule_FromVoidPtr in fortranobject.o | |
| "_PyCObject_Type", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyCapsule_Check in fortranobject.o | |
| "_PyComplex_FromDoubles", referenced from: | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| "_PyComplex_Type", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyDict_DelItemString", referenced from: | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_GetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| "_PyDict_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyDict_SetItemString", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _PyFortranObject_New in fortranobject.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyErr_Clear", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyErr_Format", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyErr_NewException", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyErr_Occurred", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| ... | |
| "_PyErr_Print", referenced from: | |
| _initflib in flibmodule.o | |
| _F2PyDict_SetItemString in fortranobject.o | |
| "_PyErr_SetString", referenced from: | |
| _initflib in flibmodule.o | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_PyEval_RestoreThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyEval_SaveThread", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| _f2py_rout_flib_sn_like in flibmodule.o | |
| _f2py_rout_flib_rskewnorm in flibmodule.o | |
| ... | |
| "_PyExc_AttributeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_setattr in fortranobject.o | |
| "_PyExc_ImportError", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyExc_MemoryError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| "_PyExc_RuntimeError", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_call in fortranobject.o | |
| "_PyExc_TypeError", referenced from: | |
| _fortran_call in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyExc_ValueError", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyFloat_Type", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyImport_ImportModule", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyMem_Free", referenced from: | |
| _fortran_dealloc in fortranobject.o | |
| "_PyModule_GetDict", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyNumber_Float", referenced from: | |
| _double_from_pyobj in flibmodule.o | |
| "_PyNumber_Int", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| "_PyObject_GetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _fortran_repr in fortranobject.o | |
| "_PyObject_IsTrue", referenced from: | |
| _f2py_rout_flib_constrain in flibmodule.o | |
| "_PyObject_SetAttrString", referenced from: | |
| _initflib in flibmodule.o | |
| "_PyObject_Str", referenced from: | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyObject_Type", referenced from: | |
| _array_from_pyobj in fortranobject.o | |
| "_PySequence_Check", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PySequence_GetItem", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| "_PyString_AsString", referenced from: | |
| _fortran_repr in fortranobject.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyString_ConcatAndDel", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_PyString_FromFormat", referenced from: | |
| _fortran_repr in fortranobject.o | |
| "_PyString_FromString", referenced from: | |
| _initflib in flibmodule.o | |
| _fortran_getattr in fortranobject.o | |
| _fortran_repr in fortranobject.o | |
| "_PyType_IsSubtype", referenced from: | |
| _int_from_pyobj in flibmodule.o | |
| _double_from_pyobj in flibmodule.o | |
| _string_from_pyobj in flibmodule.o | |
| _array_from_pyobj in fortranobject.o | |
| "_PyType_Type", referenced from: | |
| _initflib in flibmodule.o | |
| "_Py_BuildValue", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| "_Py_FindMethod", referenced from: | |
| _fortran_getattr in fortranobject.o | |
| "_Py_InitModule4_64", referenced from: | |
| _initflib in flibmodule.o | |
| "__PyObject_New", referenced from: | |
| _PyFortranObject_New in fortranobject.o | |
| _PyFortranObject_NewAsAttr in fortranobject.o | |
| "__Py_NoneStruct", referenced from: | |
| _f2py_rout_flib_symmetrize in flibmodule.o | |
| _f2py_rout_flib_logsum in flibmodule.o | |
| _f2py_rout_flib_logsum_cpx in flibmodule.o | |
| _f2py_rout_flib_combinationln in flibmodule.o | |
| _f2py_rout_flib_expand_triangular in flibmodule.o | |
| _f2py_rout_flib_mod_to_circle in flibmodule.o | |
| _f2py_rout_flib_standardize in flibmodule.o | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| error: Command "/usr/local/bin/gfortran -Wall -L/usr/local/opt/zlib/lib build/temp.macosx-10.9-x86_64-2.7/cephes/i0.o build/temp.macosx-10.9-x86_64-2.7/cephes/c2f.o build/temp.macosx-10.9-x86_64-2.7/cephes/chbevl.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/fortranobject.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib.o build/temp.macosx-10.9-x86_64-2.7/pymc/histogram.o build/temp.macosx-10.9-x86_64-2.7/pymc/flib_blas.o build/temp.macosx-10.9-x86_64-2.7/pymc/blas_wrap.o build/temp.macosx-10.9-x86_64-2.7/pymc/math.o build/temp.macosx-10.9-x86_64-2.7/pymc/gibbsit.o build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -o build/lib.macosx-10.9-x86_64-2.7/pymc/flib.so -Wl,-framework -Wl,Accelerate" failed with exit status 1 | |
| Complete output from command /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import setuptools;__file__='/private/var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip_build_olga/pymc/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/6l/83vj6nxn6g1b6l2c9ycym4hc0000gn/T/pip-vhJM11-record/install-record.txt --single-version-externally-managed: | |
| running install | |
| running build | |
| running config_cc | |
| unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
| running config_fc | |
| unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
| running build_src | |
| build_src | |
| building extension "pymc.flib" sources | |
| f2py options: ['skip:ppnd7'] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. | |
| building extension "pymc.LazyFunction" sources | |
| building extension "pymc.Container_values" sources | |
| building extension "pymc.gp.linalg_utils" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.incomplete_chol" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| adding 'build/src.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. | |
| building extension "pymc.gp.cov_funs.distances" sources | |
| f2py options: [] | |
| adding 'build/src.macosx-10.9-x86_64-2.7/fortranobject.c' to sources. | |
| adding 'build/src.macosx-10.9-x86_64-2.7' to include_dirs. | |
| build_src: building npy-pkg config files | |
| running build_py | |
| creating build/lib.macosx-10.9-x86_64-2.7 | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/calc_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CircularStochastic.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/CommonDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/datatypes.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/decorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/diagnostics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/InstantiationDecorators.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Matplot.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/Node.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NormalApproximation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/NumpyDeterministics.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/progressbar.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/PyMCObjects.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/ScipyDistributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/six.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/StepMethods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/threadpool.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| copying pymc/utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/base.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/hdf5ea.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/no_trace.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/pickle.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/ram.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/sqlite.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| copying pymc/database/txt.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/database | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/custom_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_gof.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_linear.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/disaster_model_null.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/gelman_bioassay.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/melanoma_data.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/weibull_fit.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| copying pymc/examples/zip.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/covparams.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/mesh_choice.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/PyMCmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| copying pymc/examples/gp/realizations.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/examples/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/objectmodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_adaptive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_AM.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_basiscov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_binary_step.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_container.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_convergence.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_cov.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_database.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_distributions.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_GP_MCMC.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_gradients.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_instantiation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_interactive.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_MCMCSampler.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_missing.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_norm_approx.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_observation.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_special_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| copying pymc/tests/test_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/tests | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/BasisCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Covariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/FullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gp_submodel.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/gpplots.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/GPutils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Mean.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/Realization.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| copying pymc/gp/step_methods.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp | |
| creating build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/bases.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/brownian.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/cov_utils.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/nsmatern.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.macosx-10.9-x86_64-2.7/pymc/gp/cov_funs | |
| running build_ext | |
| customize UnixCCompiler | |
| customize UnixCCompiler using build_ext | |
| customize Gnu95FCompiler | |
| Found executable /usr/local/bin/gfortran | |
| customize Gnu95FCompiler | |
| customize Gnu95FCompiler using build_ext | |
| building 'pymc.flib' extension | |
| compiling C sources | |
| C compiler: clang -fno-strict-aliasing -fno-common -dynamic -I/usr/local/include -I/usr/local/opt/sqlite/include -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/opt/zlib/include | |
| creating build/temp.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/cephes | |
| creating build/temp.macosx-10.9-x86_64-2.7/build | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7 | |
| creating build/temp.macosx-10.9-x86_64-2.7/build/src.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| extra options: '-msse3' | |
| clang: build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:18: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16817:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds] | |
| d = shape(x,2); | |
| ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:86:24: note: expanded from macro 'shape' | |
| #define shape(var,dim) var ## _Dims[dim] | |
| ^ | |
| <scratch space>:394:1: note: expanded from here | |
| x_Dims | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:16718:3: note: array 'x_Dims' declared here | |
| npy_intp x_Dims[2] = {-1, -1}; | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/pymc/flibmodule.c:181:12: warning: unused function 'f2py_size' [-Wunused-function] | |
| static int f2py_size(PyArrayObject* var, ...) | |
| ^ | |
| 3 warnings generated. | |
| clang: build/src.macosx-10.9-x86_64-2.7/fortranobject.c | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.c:2: | |
| In file included from build/src.macosx-10.9-x86_64-2.7/fortranobject.h:13: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: | |
| In file included from /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760: | |
| /usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] | |
| #warning "Using deprecated NumPy API, disable it by " \ | |
| ^ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] | |
| if ((fp->defs[i].func==NULL)) { | |
| ~~~~~~~~~~~~~~~~^~~~~~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: remove extraneous parentheses around the comparison to silence this warning | |
| if ((fp->defs[i].func==NULL)) { | |
| ~ ^ ~ | |
| build/src.macosx-10.9-x86_64-2.7/fortranobject.c:338:30: note: use '=' to turn this equality comparison into an assignment | |
| if ((fp->defs[i].func==NULL)) { | |
| ^~ | |
| = | |
| 2 warnings generated. | |
| clang: cephes/chbevl.c | |
| clang: cephes/i0.c | |
| clang: cephes/c2f.c | |
| compiling Fortran sources | |
| Fortran f77 compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran f90 compiler: /usr/local/bin/gfortran -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| Fortran fix compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3 -funroll-loops | |
| creating build/temp.macosx-10.9-x86_64-2.7/pymc | |
| compile options: '-DNO_ATLAS_INFO=3 -Ibuild/src.macosx-10.9-x86_64-2.7 -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/usr/local/Cellar/python/2.7.6/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' | |
| gfortran:f77: pymc/flib.f | |
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