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olgabot / _.md
Created April 7, 2013 20:20
fastqc tests heatmap
@olgabot
olgabot / Implementing design principles in matplotlib
Last active November 21, 2018 17:20
UCSD Scientific Python User Group presentation April 10th, 2013: Implementing design principles in matplotlib
This file has been truncated, but you can view the full file.
{
"metadata": {
"name": "design_with_bokeh"
},
"nbformat": 3,
"nbformat_minor": 0,
"worksheets": [
{
"cells": [
{
@olgabot
olgabot / gist:5432378
Last active December 16, 2015 12:09
Beautiful boxplots and sassy small multiples
This file has been truncated, but you can view the full file.
{
"metadata": {
"name": "design2"
},
"nbformat": 3,
"nbformat_minor": 0,
"worksheets": [
{
"cells": [
{
@olgabot
olgabot / gist:5454138
Created April 24, 2013 17:59
Scatterplot with histogram distributions of x- and y-axes.
This file has been truncated, but you can view the full file.
{
"metadata": {
"name": "design3"
},
"nbformat": 3,
"nbformat_minor": 0,
"worksheets": [
{
"cells": [
{
@olgabot
olgabot / brew --config
Last active December 21, 2015 10:59
gcc48 (4.8.1) won't install on 10.8.4
scrm-bio-228-232-2:~ olga$ brew --config
HOMEBREW_VERSION: 0.9.4
ORIGIN: https://github.com/mxcl/homebrew.git
HEAD: cdf08aa79bd21fcd7b4a5d0d9b435671de477637
HOMEBREW_PREFIX: /usr/local
HOMEBREW_CELLAR: /usr/local/Cellar
CPU: 8-core 64-bit ivybridge
OS X: 10.8.4-x86_64
Xcode: 4.6.3
CLT: 1.0.0.9000000000.1.1249367152
@olgabot
olgabot / gist:7275083
Created November 2, 2013 03:14
This is my custom.css file in: ~/.ipython/profile_customcss/static/css/custom.css
/**write your css in here**/
/* like */
<style>
.CodeMirror{
font-family: "Consolas", sans-serif;
}
pre, code, kbd, samp {
font-family: Consolas, monospace;
@olgabot
olgabot / log.err
Created November 11, 2013 21:21
Error log from installing `pymc` on Mac OS 10.9
Last login: Mon Nov 11 08:29:55 on ttys009
Olgas-MacBook-Pro-1378:~ olga$ pip install pymc
Downloading/unpacking pymc
Downloading pymc-2.3.tar.gz (13.1MB): 13.1MB downloaded
Running setup.py egg_info for package pymc
build_src
building extension "pymc.flib" sources
f2py options: ['skip:ppnd7']
f2py:> build/src.macosx-10.5-x86_64-2.7/pymc/flibmodule.c
IOError: [Errno 2] No such file or directory: 'skip:ppnd7'. Skipping file "skip:ppnd7".
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olgabot / proof
Created November 15, 2013 01:16
reinstalling matplotlib dependencies
llscrm-bio-228-232-2:~ olga$ brew reinstall freetype
==> Reinstalling freetype
==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/freetype-2.5.0.1.mavericks.bottle.1.tar.gz
Already downloaded: /Library/Caches/Homebrew/freetype-2.5.0.1.mavericks.bottle.1.tar.gz
==> Pouring freetype-2.5.0.1.mavericks.bottle.1.tar.gz
🍺 /usr/local/Cellar/freetype/2.5.0.1: 59 files, 2.6M
scrm-bio-228-232-2:~ olga$ brew reinstall gfortran
==> Reinstalling gfortran
==> Downloading http://ftpmirror.gnu.org/gcc/gcc-4.8.2/gcc-4.8.2.tar.bz2
Already downloaded: /Library/Caches/Homebrew/gfortran-4.8.2.tar.bz2
@olgabot
olgabot / brew config
Last active December 28, 2015 10:09
Trouble installing matplotlib
Olgas-MacBook-Pro-1378:~ olga$ brew --config
HOMEBREW_VERSION: 0.9.5
ORIGIN: https://github.com/mxcl/homebrew.git
HEAD: 4b0ddec26aaddaa4fe68b41168e4b231c4b66e1f
HOMEBREW_PREFIX: /usr/local
HOMEBREW_CELLAR: /usr/local/Cellar
CPU: 8-core 64-bit ivybridge
OS X: 10.9-x86_64
Xcode: 5.0.2
CLT: 5.0.1.0.1.1382131676
@olgabot
olgabot / System mac error when installing matplotlib (trial 2)
Last active December 28, 2015 10:09
Process: Python [72274]
Path: /usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 2.7.5 (2.7.5)
Code Type: X86-64 (Native)
Parent Process: Python [72259]
Responsible: Terminal [256]
User ID: 501
Date/Time: 2013-11-14 17:14:44.942 -0800