Olga Botvinnik olgabot
olgabot
/ seaborn_violin_plots.ipynb
Created
December 16, 2013 18:43
Improvements to [seaborn](http://stanford.edu/~mwaskom/software/seaborn/index.html) violin plots
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olgabot
/ 2013-12-24_stackoverflow_matplotlib_fonts.ipynb
Created
December 23, 2013 16:23
Finding matplotlib font locations
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olgabot
/ seaborn_violinplot_series_gropuby.ipynb
Created
December 24, 2013 22:48
Seaborn violin plots series with groupby
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olgabot
/ matplotlib_spines_rcparams.ipynb
Created
January 4, 2014 20:52
Matplotlib spines/ticks rcParams
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olgabot
/ seaborn violin plot tidy
Created
January 10, 2014 00:08
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| pkm = df_tidy[df_tidy.miso_id == gene_name_to_miso_mxe['PKM'][0]] | |
| fig, ax = plt.subplots(1, figsize=(8,6)) | |
| sns.violinplot(pkm.value, pkm.celltype, "points", fig=fig, ax=ax, | |
| color=[common.p_color, common.n_color, common.m_color, | |
| common.o_color, 'white'], | |
| bw=0.03, order=['iPSC', 'NPSC', 'MotorNeu', 'Outliers', 'pooled'], | |
| alpha=0.75, linewidth=1) | |
| sns.despine() | |
| xmin, xmax, ymin, ymax = ax.axis() | |
| ax.hlines((0.3, 0.7), xmin, xmax, color='k', alpha=0.8, linewidth=0.5) |
olgabot
/ pymc_gfortran_error.txt
Last active
January 3, 2016 12:09
gfortran error installing pymc on OS X mavericks
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| scrm-bio-228-232-2:~ olga$ pip install -vvv pymc | |
| Downloading/unpacking pymc | |
| Getting page https://pypi.python.org/simple/pymc/ | |
| URLs to search for versions for pymc: | |
| * https://pypi.python.org/simple/pymc/ | |
| Analyzing links from page https://pypi.python.org/simple/pymc/ | |
| Skipping link https://pypi.python.org/packages/2.5/p/pymc/pymc-2.0-py2.5-macosx-10.3-i386.egg#md5=23886f86615004f777a0470c69edf265 (from https://pypi.python.org/simple/pymc/); unknown archive format: .egg | |
| Skipping link https://pypi.python.org/packages/2.5/p/pymc/pymc-2.0.win32-py2.5.exe#md5=a96a9c90edd4848bffdff8a809b901e8 (from https://pypi.python.org/simple/pymc/); unknown archive format: .exe | |
| Skipping link https://pypi.python.org/packages/2.5/p/pymc/pymc-2.1beta.win32-py2.5.exe#md5=fdba7f86d41ab515f718b4a5889ed140 (from https://pypi.python.org/simple/pymc/); unknown archive format: .exe | |
| Skipping link https://pypi.python.org/packages/2.6/p/pymc/pymc-2.1beta-py2.6-macosx-10.6-universal.egg#md5=9c7513869c28d94fb618d8ef140a76 |
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| tac | |
| ta | |
| scrm-bio-228-232-2:~ olga$ tac | |
| -bash: tac: command not found | |
| scrm-bio-228-232-2:~ olga$ ta | |
| scrm-bio-228-232-2:rosalind-c olga$ cd rosalind_problems/Chapter\ 4-Assembly/figures/ | |
| scrm-bio-228-232-2:figures olga$ git add . ; git commit -m 'finished overlap graph' ; git push origin master | |
| [master 5822e8a] finished overlap graph | |
| 21 files changed, 196 insertions(+), 198 deletions(-) | |
| create mode 100644 rosalind_problems/LaTeX Files/Chapters/Assembly.log |
olgabot
/ prettyplotlib_side_effect_free.ipynb
Created
January 22, 2014 23:45
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