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<body>
<div id="content">
<h1 class="title">Discussion points - DataCube S3 Refactor</h1>
<div id="table-of-contents">
<h2>Table of Contents</h2>
<div id="text-table-of-contents">
<ul>
<li><a href="#org772f239">1. Must Change</a></li>
<li><a href="#orgcfdea83">2. Use Cases</a>
<ul>
<li><a href="#org6397913">2.1. Simple</a></li>
<li><a href="#org50348e2">2.2. Compute jobs at NCI</a></li>
</ul>
</li>
<li><a href="#org4733516">3. Configuration</a></li>
<li><a href="#orga3a5ec0">4. Types of drivers/extension points</a>
<ul>
<li><a href="#org169fa1a">4.1. Database extension</a></li>
<li><a href="#org663be17">4.2. Storage read</a></li>
<li><a href="#orgb70fda0">4.3. Storage write</a></li>
</ul>
</li>
<li><a href="#orga50e33b">5. Proposed architecture</a></li>
<li><a href="#org4216c9d">6. Driver resolution for querying for data</a></li>
<li><a href="#org9cb81e4">7. Driver resolution for loading data</a></li>
</ul>
</div>
</div>
<div id="outline-container-org772f239" class="outline-2">
<h2 id="org772f239"><span class="section-number-2">1</span> Must Change</h2>
<div class="outline-text-2" id="text-1">
<ol class="org-ol">
<li>URI schema cannot be <code>s3://</code>, that is already a standard protocol, the
<code>uri_body</code> that is generated is meaningless and is ignored.</li>
<li>Change how connections to database are managed</li>
<li></li>
</ol>
</div>
</div>
<div id="outline-container-orgcfdea83" class="outline-2">
<h2 id="orgcfdea83"><span class="section-number-2">2</span> Use Cases</h2>
<div class="outline-text-2" id="text-2">
</div>
<div id="outline-container-org6397913" class="outline-3">
<h3 id="org6397913"><span class="section-number-3">2.1</span> Simple</h3>
<div class="outline-text-3" id="text-2-1">
<div class="figure">
<p><object type="image/svg+xml" data="simple_use_case.svg" class="org-svg">
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</p>
</div>
</div>
</div>
<div id="outline-container-org50348e2" class="outline-3">
<h3 id="org50348e2"><span class="section-number-3">2.2</span> Compute jobs at NCI</h3>
<div class="outline-text-3" id="text-2-2">
<div class="figure">
<p><object type="image/svg+xml" data="nci_compute_job.svg" class="org-svg">
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</p>
</div>
</div>
</div>
</div>
<div id="outline-container-org4733516" class="outline-2">
<h2 id="org4733516"><span class="section-number-2">3</span> Configuration</h2>
<div class="outline-text-2" id="text-3">
<ul class="org-ul">
<li>When the library is loaded, it will find a list of available datacubes/environments</li>
<li>An environment specifies which database to connect to, it could also specify which
database driver to use.</li>
<li></li>
</ul>
<p>
I think it only makes sense for a `Datacube`
</p>
</div>
</div>
<div id="outline-container-orga3a5ec0" class="outline-2">
<h2 id="orga3a5ec0"><span class="section-number-2">4</span> Types of drivers/extension points</h2>
<div class="outline-text-2" id="text-4">
</div>
<div id="outline-container-org169fa1a" class="outline-3">
<h3 id="org169fa1a"><span class="section-number-3">4.1</span> Database extension</h3>
<div class="outline-text-3" id="text-4-1">
<ul class="org-ul">
<li>Options
<ul class="org-ul">
<li></li>
<li>Only one can exist for a single instance of DataCube</li>
</ul></li>
<li></li>
</ul>
<div class="figure">
<p><object type="image/svg+xml" data="proposed_database_extension_classes.svg" class="org-svg">
Sorry, your browser does not support SVG.</object>
</p>
</div>
</div>
</div>
<div id="outline-container-org663be17" class="outline-3">
<h3 id="org663be17"><span class="section-number-3">4.2</span> Storage read</h3>
<div class="outline-text-3" id="text-4-2">
<ul class="org-ul">
<li>Multiple should be available in the same Datacube Instance</li>
<li>Need a way to</li>
</ul>
<div class="figure">
<p><object type="image/svg+xml" data="proposed_classes.svg" class="org-svg">
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</p>
</div>
</div>
</div>
<div id="outline-container-orgb70fda0" class="outline-3">
<h3 id="orgb70fda0"><span class="section-number-3">4.3</span> Storage write</h3>
<div class="outline-text-3" id="text-4-3">
<ul class="org-ul">
<li>Multiple can be available, but we don't need automatic selection. User can
specify using either a configuration file or command line arguments.</li>
</ul>
<p>
<b>*</b>
</p>
</div>
</div>
</div>
<div id="outline-container-orga50e33b" class="outline-2">
<h2 id="orga50e33b"><span class="section-number-2">5</span> Proposed architecture</h2>
</div>
<div id="outline-container-org4216c9d" class="outline-2">
<h2 id="org4216c9d"><span class="section-number-2">6</span> Driver resolution for querying for data</h2>
</div>
<div id="outline-container-org9cb81e4" class="outline-2">
<h2 id="org9cb81e4"><span class="section-number-2">7</span> Driver resolution for loading data</h2>
<div class="outline-text-2" id="text-7">
<p>
dea-clean.e1607197
</p>
</div>
</div>
</div>
<div id="postamble" class="status">
<p class="author">Author: Damien Ayers</p>
<p class="date">Created: 2017-12-08 Fri 11:59</p>
<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
</div>
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