Created
March 25, 2019 12:00
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example contrast table using emmeans, gt and html tools.
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# load packages | |
library(gt) | |
library(htmltools) | |
library(emmeans) | |
library(dplyr) | |
library(tidyr) | |
# load example data | |
data(fiber) | |
?fiber | |
# run linear model | |
mod <- lm(strength ~ machine, fiber) | |
# do pairwise contrasts | |
emmeans::emmeans(mod, pairwise ~ machine) | |
# make contrast table | |
table <- emmeans::emmeans(mod, pairwise ~ machine)$contrasts %>% | |
data.frame(stringsAsFactors = FALSE) %>% | |
mutate(., p.value = round(p.value, 3)) %>% | |
mutate_at(., c('estimate', 'SE', 'df', 't.ratio'), function(x){round(x, 2)}) %>% | |
rename(`p value` = p.value, `t-ratio` = t.ratio, `d.f.` = df) %>% | |
gt(.) %>% | |
cols_align('center') %>% | |
tab_source_note( | |
source_note = "P value adjustment: tukey method for comparing a family of 3 estimates." | |
) %>% | |
tab_style( | |
style = cells_styles( | |
text_weight = "bold"), | |
locations = cells_data( | |
rows = `p value` < 0.05) | |
) %>% | |
gt:::as.tags.gt_tbl() | |
# change font | |
table[[1]]$children[[1]] <- gsub( | |
"font-family: [[:print:]]*\n", | |
"font-famuly: 'Times New Roman';\n", | |
table[[1]]$children[[1]] | |
) | |
html_print(table) |
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Hi! Thank you for sharing.
I keep getting this error, any ideas?
Error in writeImpl(text) :
Text to be written must be a length-one character vector