gistfile1.java

2011-09-28 11:11:19,771 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - textToAnnotate = [melanoma heart brain ]
2011-09-28 11:11:19,775 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - mgrepResults size = 128
2011-09-28 11:11:19,775 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - Computing direct annotations.....
2011-09-28 11:11:20,167 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - [Duration for DIRECT Annotations for 'OBA_RESULT_9f10' = 00 hours, 00 minutes, 00 seconds.]
2011-09-28 11:11:20,167 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - Computing ISA_CLOSURE expanded annotations.....
2011-09-28 11:11:21,159 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - [Duration for ISA Annotations for 'OBA_RESULT_9f10' = 00 hours, 00 minutes, 00 seconds.]
2011-09-28 11:11:21,159 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - Computing MAPPING expanded annotations.....
2011-09-28 11:11:21,159 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - [Duration for MAPPING Annotations for 'OBA_RESULT_9f10' = 00 hours, 00 minutes, 00 seconds.]
2011-09-28 11:11:21,159 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - getScoredAnnotations() in progress.....
2011-09-28 11:11:21,160 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - computeOntologies() in progress.....
Sep 28, 2011 11:11:21 AM com.noelios.restlet.StatusFilter getStatus
SEVERE: Unhandled exception or error intercepted
java.lang.NoSuchMethodError: org.ncbo.stanford.obs.bean.annotator.ObaResultBean.<init>(Ljava/lang/String;Ljava/util/HashSet;Lorg/ncbo/stanford/obs/bean/annotator/ParametersBean;Ljava/util/ArrayList;Ljava/util/ArrayList;)V
	at org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl.annotate(AnnotatorServiceImpl.java:163)
	at org.ncbo.stanford.obs.service.recommender.impl.RecommenderServiceImpl.recommend(RecommenderServiceImpl.java:108)
	at org.ncbo.stanford.obs.view.rest.restlet.recommender.RecommenderRestlet.postRequest(RecommenderRestlet.java:52)
	at org.ncbo.stanford.obs.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44)
	at org.restlet.Filter.doHandle(Filter.java:105)
	at org.restlet.Filter.handle(Filter.java:135)
	at org.restlet.Router.handle(Router.java:445)
	at org.restlet.Filter.doHandle(Filter.java:105)
	at org.restlet.Filter.handle(Filter.java:135)
	at org.restlet.Filter.doHandle(Filter.java:105)
	at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:89)
	at org.restlet.Filter.handle(Filter.java:135)
	at org.restlet.Filter.doHandle(Filter.java:105)
	at org.restlet.Filter.handle(Filter.java:135)
	at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:98)
	at org.restlet.Application.handle(Application.java:294)
	at org.restlet.Filter.doHandle(Filter.java:105)
	at org.restlet.Filter.handle(Filter.java:135)
	at org.restlet.Router.handle(Router.java:445)
	at org.restlet.Filter.doHandle(Filter.java:105)
	at org.restlet.Filter.handle(Filter.java:135)
	at org.restlet.Router.handle(Router.java:445)
	at org.restlet.Filter.doHandle(Filter.java:105)
	at org.restlet.Filter.handle(Filter.java:135)
	at com.noelios.restlet.component.ComponentHelper.handle(ComponentHelper.java:120)
	at org.restlet.Component.handle(Component.java:231)
	at org.restlet.Server.handle(Server.java:282)
	at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:100)
	at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:94)
	at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:399)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198)
	at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.ncbo.stanford.obs.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
	at org.apache.coyote.ajp.AjpAprProcessor.process(AjpAprProcessor.java:427)
	at org.apache.coyote.ajp.AjpAprProtocol$AjpConnectionHandler.process(AjpAprProtocol.java:384)
	at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555)
	at java.lang.Thread.run(Thread.java:662)
Sep 28, 2011 11:11:21 AM com.noelios.restlet.LogFilter afterHandle
INFO: 2011-09-28	11:11:21	171.65.32.150	-	stagerest.bioontology.org	80	POST	/obs/recommender	-	500	366	69	1517	http://stagerest.bioontology.org	HTTP%20Client/0.9.1 CFNetwork/454.12.4 Darwin/10.8.0 (i386) (MacBookPro5%2C3)	-