Created
August 11, 2010 22:40
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| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@591227c4 is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:331) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:317) | |
| at org.hibernate.transaction.JDBCTransaction.toggleAutoCommit(JDBCTransaction.java:194) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:142) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:321) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:116) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy7.findConcept(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.concept.ConceptRestlet.findConcept(ConceptRestlet.java:87) | |
| at org.ncbo.stanford.view.rest.restlet.concept.ConceptRestlet.getRequest(ConceptRestlet.java:30) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@633f2aee is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.commit(DelegatingConnection.java:301) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.commit(PoolingDataSource.java:200) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:139) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:321) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:116) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy7.findConcept(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.concept.ConceptRestlet.findConcept(ConceptRestlet.java:87) | |
| at org.ncbo.stanford.view.rest.restlet.concept.ConceptRestlet.getRequest(ConceptRestlet.java:30) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@5ec91d2d is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:331) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:317) | |
| at org.hibernate.transaction.JDBCTransaction.toggleAutoCommit(JDBCTransaction.java:194) | |
| at org.hibernate.transaction.JDBCTransaction.rollbackAndResetAutoCommit(JDBCTransaction.java:186) | |
| at org.hibernate.transaction.JDBCTransaction.rollback(JDBCTransaction.java:162) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doRollback(HibernateTransactionManager.java:674) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processRollback(AbstractPlatformTransactionManager.java:823) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.rollback(AbstractPlatformTransactionManager.java:800) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.completeTransactionAfterThrowing(TransactionAspectSupport.java:339) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy8.executeQuery(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.executeSearch(QueryRestlet.java:100) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.getRequest(QueryRestlet.java:39) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| 2010-08-11 15:07:49,027 [http-8080-16] ERROR - JDBC rollback failed | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@5ec91d2d is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.rollback(DelegatingConnection.java:328) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.rollback(PoolingDataSource.java:312) | |
| at org.hibernate.transaction.JDBCTransaction.rollbackAndResetAutoCommit(JDBCTransaction.java:183) | |
| at org.hibernate.transaction.JDBCTransaction.rollback(JDBCTransaction.java:162) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doRollback(HibernateTransactionManager.java:674) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processRollback(AbstractPlatformTransactionManager.java:823) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.rollback(AbstractPlatformTransactionManager.java:800) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.completeTransactionAfterThrowing(TransactionAspectSupport.java:339) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy8.executeQuery(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.executeSearch(QueryRestlet.java:100) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.getRequest(QueryRestlet.java:39) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| 2010-08-11 15:07:49,027 [http-8080-16] WARN - SQL Error: 0, SQLState: null | |
| 2010-08-11 15:07:49,027 [http-8080-16] ERROR - Already closed. | |
| 2010-08-11 15:07:49,028 [http-8080-16] WARN - SQL Error: 0, SQLState: null | |
| 2010-08-11 15:07:49,028 [http-8080-16] ERROR - Already closed. | |
| 2010-08-11 15:07:49,028 [http-8080-16] ERROR - Application exception overridden by rollback exception | |
| java.lang.OutOfMemoryError: Java heap space | |
| at java.util.Arrays.copyOfRange(Arrays.java:3209) | |
| at java.lang.String.<init>(String.java:215) | |
| at java.lang.StringBuffer.toString(StringBuffer.java:585) | |
| at org.apache.lucene.search.MultiPhraseQuery.toString(MultiPhraseQuery.java:304) | |
| at org.apache.lucene.search.BooleanQuery.toString(BooleanQuery.java:431) | |
| at org.apache.lucene.search.BooleanQuery.toString(BooleanQuery.java:428) | |
| at org.apache.lucene.search.Query.toString(Query.java:80) | |
| at java.lang.String.valueOf(String.java:2826) | |
| at java.lang.StringBuilder.append(StringBuilder.java:115) | |
| at org.ncbo.stanford.service.search.AbstractSearchService.composeCacheKey(AbstractSearchService.java:383) | |
| at org.ncbo.stanford.service.search.impl.QuerySearchServiceImpl.executeQuery(QuerySearchServiceImpl.java:242) | |
| at org.ncbo.stanford.service.search.impl.QuerySearchServiceImpl.executeQuery(QuerySearchServiceImpl.java:178) | |
| at sun.reflect.GeneratedMethodAccessor101.invoke(Unknown Source) | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) | |
| at java.lang.reflect.Method.invoke(Method.java:597) | |
| at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy8.executeQuery(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.executeSearch(QueryRestlet.java:100) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.getRequest(QueryRestlet.java:39) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| 2010-08-11 15:07:49,112 [http-8080-21] ERROR - Could not toggle autocommit | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@e4ff5e5 is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:331) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:317) | |
| at org.hibernate.transaction.JDBCTransaction.toggleAutoCommit(JDBCTransaction.java:194) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:142) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:321) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:116) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy7.findPathFromRoot(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.path.PathRestlet.findPathFromRoot(PathRestlet.java:70) | |
| at org.ncbo.stanford.view.rest.restlet.path.PathRestlet.getRequest(PathRestlet.java:31) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| 2010-08-11 15:07:53,121 [http-8080-21] ERROR - JDBC commit failed | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@e4ff5e5 is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.commit(DelegatingConnection.java:301) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.commit(PoolingDataSource.java:200) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:139) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:321) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:116) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy7.findPathFromRoot(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.path.PathRestlet.findPathFromRoot(PathRestlet.java:70) | |
| at org.ncbo.stanford.view.rest.restlet.path.PathRestlet.getRequest(PathRestlet.java:31) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@1b7f3921 is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:331) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:317) | |
| at org.hibernate.transaction.JDBCTransaction.toggleAutoCommit(JDBCTransaction.java:194) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:142) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.completeTransactionAfterThrowing(TransactionAspectSupport.java:359) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy8.executeQuery(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.executeSearch(QueryRestlet.java:100) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.getRequest(QueryRestlet.java:39) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| 2010-08-11 15:09:44,845 [http-8080-3] ERROR - JDBC commit failed | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@1b7f3921 is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.commit(DelegatingConnection.java:301) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.commit(PoolingDataSource.java:200) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:139) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.completeTransactionAfterThrowing(TransactionAspectSupport.java:359) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy8.executeQuery(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.executeSearch(QueryRestlet.java:100) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.getRequest(QueryRestlet.java:39) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| 2010-08-11 15:09:44,846 [http-8080-3] WARN - SQL Error: 0, SQLState: null | |
| 2010-08-11 15:09:44,846 [http-8080-3] ERROR - Already closed. | |
| 2010-08-11 15:09:44,846 [http-8080-3] WARN - SQL Error: 0, SQLState: null | |
| 2010-08-11 15:09:44,846 [http-8080-3] ERROR - Already closed. | |
| 2010-08-11 15:09:44,846 [http-8080-3] ERROR - Application exception overridden by commit exception | |
| java.lang.Exception: java.lang.OutOfMemoryError: GC overhead limit exceeded | |
| at org.ncbo.stanford.service.search.AbstractSearchService.runQuery(AbstractSearchService.java:101) | |
| at org.ncbo.stanford.service.search.impl.QuerySearchServiceImpl.executeQuery(QuerySearchServiceImpl.java:248) | |
| at org.ncbo.stanford.service.search.impl.QuerySearchServiceImpl.executeQuery(QuerySearchServiceImpl.java:178) | |
| at sun.reflect.GeneratedMethodAccessor101.invoke(Unknown Source) | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) | |
| at java.lang.reflect.Method.invoke(Method.java:597) | |
| at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy8.executeQuery(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.executeSearch(QueryRestlet.java:100) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.getRequest(QueryRestlet.java:39) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| Caused by: java.lang.OutOfMemoryError: GC overhead limit exceeded | |
| at org.apache.lucene.store.BufferedIndexInput.refill(BufferedIndexInput.java:154) | |
| at org.apache.lucene.store.BufferedIndexInput.readByte(BufferedIndexInput.java:38) | |
| at org.apache.lucene.store.IndexInput.readVInt(IndexInput.java:78) | |
| at org.apache.lucene.index.SegmentTermDocs.next(SegmentTermDocs.java:110) | |
| at org.apache.lucene.index.SegmentTermPositions.next(SegmentTermPositions.java:98) | |
| at org.apache.lucene.index.MultipleTermPositions$TermPositionsQueue.<init>(MultipleTermPositions.java:42) | |
| at org.apache.lucene.index.MultipleTermPositions.<init>(MultipleTermPositions.java:110) | |
| at org.apache.lucene.search.MultiPhraseQuery$MultiPhraseWeight.scorer(MultiPhraseQuery.java:172) | |
| at org.apache.lucene.search.BooleanQuery$BooleanWeight.scorer(BooleanQuery.java:230) | |
| at org.apache.lucene.search.BooleanQuery$BooleanWeight.scorer(BooleanQuery.java:230) | |
| at org.apache.lucene.search.IndexSearcher.search(IndexSearcher.java:131) | |
| at org.apache.lucene.search.IndexSearcher.search(IndexSearcher.java:123) | |
| at org.apache.lucene.search.Searcher.search(Searcher.java:86) | |
| at org.ncbo.stanford.service.search.AbstractSearchService.runQuery(AbstractSearchService.java:98) | |
| at org.ncbo.stanford.service.search.impl.QuerySearchServiceImpl.executeQuery(QuerySearchServiceImpl.java:248) | |
| at org.ncbo.stanford.service.search.impl.QuerySearchServiceImpl.executeQuery(QuerySearchServiceImpl.java:178) | |
| at sun.reflect.GeneratedMethodAccessor101.invoke(Unknown Source) | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) | |
| at java.lang.reflect.Method.invoke(Method.java:597) | |
| at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy8.executeQuery(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.executeSearch(QueryRestlet.java:100) | |
| at org.ncbo.stanford.view.rest.restlet.search.QueryRestlet.getRequest(QueryRestlet.java:39) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| 2010-08-11 15:09:45,105 [http-8080-119] WARN - SQL Error: 0, SQLState: 08S01 | |
| 2010-08-11 15:09:45,105 [http-8080-119] ERROR - Communications link failure | |
| The last packet successfully received from the server was 72,462 milliseconds ago. The last packet sent successfully to the server was 72,462 milliseconds ago. | |
| 2010-08-11 15:09:45,105 [http-8080-119] WARN - SQL Error: 0, SQLState: 08S01 | |
| 2010-08-11 15:09:45,105 [http-8080-119] ERROR - Communications link failure | |
| The last packet successfully received from the server was 72,462 milliseconds ago. The last packet sent successfully to the server was 72,462 milliseconds ago. | |
| 2010-08-11 15:09:49,226 [http-8080-158] ERROR - org.ncbo.stanford.exception.OntologyDeprecatedException: Ontology has been deprecated (Version Id: 42972) | |
| 2010-08-11 15:09:49,229 [http-8080-133] ERROR - org.ncbo.stanford.exception.OntologyDeprecatedException: Ontology has been deprecated (Version Id: 42475) | |
| 2010-08-11 15:09:49,308 [http-8080-18] ERROR - Could not toggle autocommit | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@835cdab is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:331) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:317) | |
| at org.hibernate.transaction.JDBCTransaction.toggleAutoCommit(JDBCTransaction.java:194) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:142) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:321) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:116) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy7.findConcept(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.concept.ConceptRestlet.findConcept(ConceptRestlet.java:87) | |
| at org.ncbo.stanford.view.rest.restlet.concept.ConceptRestlet.getRequest(ConceptRestlet.java:30) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| 2010-08-11 15:09:49,309 [http-8080-18] ERROR - JDBC commit failed | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@835cdab is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.commit(DelegatingConnection.java:301) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.commit(PoolingDataSource.java:200) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:139) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:321) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:116) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy7.findConcept(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.concept.ConceptRestlet.findConcept(ConceptRestlet.java:87) | |
| at org.ncbo.stanford.view.rest.restlet.concept.ConceptRestlet.getRequest(ConceptRestlet.java:30) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| 2010-08-11 15:09:49,310 [http-8080-18] WARN - SQL Error: 0, SQLState: null | |
| 2010-08-11 15:09:49,310 [http-8080-18] ERROR - Already closed. | |
| 2010-08-11 15:09:49,310 [http-8080-18] WARN - SQL Error: 0, SQLState: null | |
| 2010-08-11 15:09:49,310 [http-8080-18] ERROR - Already closed. | |
| 2010-08-11 15:09:49,721 [http-8080-40] ERROR - Could not toggle autocommit | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@7227e05 is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:331) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:317) | |
| at org.hibernate.transaction.JDBCTransaction.toggleAutoCommit(JDBCTransaction.java:194) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:142) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:321) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:116) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy7.findPathFromRoot(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.path.PathRestlet.findPathFromRoot(PathRestlet.java:70) | |
| at org.ncbo.stanford.view.rest.restlet.path.PathRestlet.getRequest(PathRestlet.java:31) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| 2010-08-11 15:09:49,722 [http-8080-40] ERROR - JDBC commit failed | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@7227e05 is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.commit(DelegatingConnection.java:301) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.commit(PoolingDataSource.java:200) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:139) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:321) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:116) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy7.findPathFromRoot(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.path.PathRestlet.findPathFromRoot(PathRestlet.java:70) | |
| at org.ncbo.stanford.view.rest.restlet.path.PathRestlet.getRequest(PathRestlet.java:31) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| 2010-08-11 15:09:49,723 [http-8080-40] WARN - SQL Error: 0, SQLState: null | |
| 2010-08-11 15:09:49,723 [http-8080-40] ERROR - Already closed. | |
| 2010-08-11 15:09:49,723 [http-8080-40] WARN - SQL Error: 0, SQLState: null | |
| 2010-08-11 15:09:49,723 [http-8080-40] ERROR - Already closed. | |
| 2010-08-11 15:09:53,567 [http-8080-122] ERROR - org.ncbo.stanford.exception.OntologyDeprecatedException: Ontology has been deprecated (Version Id: 42039) | |
| 2010-08-11 15:09:53,569 [http-8080-74] ERROR - org.ncbo.stanford.exception.OntologyDeprecatedException: Ontology has been deprecated (Version Id: 42039) | |
| 2010-08-11 15:10:05,775 [http-8080-178] ERROR - Could not toggle autocommit | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@37945c14 is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:331) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:317) | |
| at org.hibernate.transaction.JDBCTransaction.toggleAutoCommit(JDBCTransaction.java:194) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:142) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:321) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:116) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy12.findOntologyOrView(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.ontology.AbstractOntologyBaseRestlet.findOntologyBean(AbstractOntologyBaseRestlet.java:58) | |
| at org.ncbo.stanford.view.rest.restlet.ontology.OntologyMetricsRestlet.getOntologyMetrics(OntologyMetricsRestlet.java:48) | |
| at org.ncbo.stanford.view.rest.restlet.ontology.OntologyMetricsRestlet.getRequest(OntologyMetricsRestlet.java:29) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.MultipartFilter.doFilter(MultipartFilter.java:87) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| 2010-08-11 15:10:05,776 [http-8080-178] ERROR - JDBC commit failed | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@37945c14 is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.commit(DelegatingConnection.java:301) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.commit(PoolingDataSource.java:200) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:139) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:321) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:116) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy12.findOntologyOrView(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.ontology.AbstractOntologyBaseRestlet.findOntologyBean(AbstractOntologyBaseRestlet.java:58) | |
| at org.ncbo.stanford.view.rest.restlet.ontology.OntologyMetricsRestlet.getOntologyMetrics(OntologyMetricsRestlet.java:48) | |
| at org.ncbo.stanford.view.rest.restlet.ontology.OntologyMetricsRestlet.getRequest(OntologyMetricsRestlet.java:29) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.MultipartFilter.doFilter(MultipartFilter.java:87) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| 2010-08-11 15:10:05,776 [http-8080-178] WARN - SQL Error: 0, SQLState: null | |
| 2010-08-11 15:10:05,776 [http-8080-178] ERROR - Already closed. | |
| 2010-08-11 15:10:05,776 [http-8080-178] WARN - SQL Error: 0, SQLState: null | |
| 2010-08-11 15:10:05,776 [http-8080-178] ERROR - Already closed. | |
| 2010-08-11 15:10:09,260 [http-8080-40] WARN - SQL Error: 0, SQLState: null | |
| 2010-08-11 15:10:09,260 [http-8080-40] ERROR - Already closed. | |
| 2010-08-11 15:10:09,260 [http-8080-40] WARN - SQL Error: 0, SQLState: null | |
| 2010-08-11 15:10:09,260 [http-8080-40] ERROR - Already closed. | |
| 2010-08-11 15:10:17,411 [http-8080-140] ERROR - org.ncbo.stanford.exception.OntologyDeprecatedException: Ontology has been deprecated (Version Id: 42311) | |
| 2010-08-11 15:10:17,414 [http-8080-18] ERROR - org.hibernate.exception.GenericJDBCException: Cannot release connection | |
| 2010-08-11 15:10:17,466 [http-8080-71] ERROR - Could not toggle autocommit | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@1cb849dc is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:331) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:317) | |
| at org.hibernate.transaction.JDBCTransaction.toggleAutoCommit(JDBCTransaction.java:194) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:142) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:321) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:116) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy7.findConcept(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.concept.ConceptRestlet.findConcept(ConceptRestlet.java:87) | |
| at org.ncbo.stanford.view.rest.restlet.concept.ConceptRestlet.getRequest(ConceptRestlet.java:30) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) | |
| 2010-08-11 15:10:17,467 [http-8080-71] ERROR - JDBC commit failed | |
| java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@1cb849dc is closed. | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354) | |
| at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.commit(DelegatingConnection.java:301) | |
| at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.commit(PoolingDataSource.java:200) | |
| at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:139) | |
| at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115) | |
| at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732) | |
| at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:701) | |
| at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:321) | |
| at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:116) | |
| at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) | |
| at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) | |
| at $Proxy7.findConcept(Unknown Source) | |
| at org.ncbo.stanford.view.rest.restlet.concept.ConceptRestlet.findConcept(ConceptRestlet.java:87) | |
| at org.ncbo.stanford.view.rest.restlet.concept.ConceptRestlet.getRequest(ConceptRestlet.java:30) | |
| at org.ncbo.stanford.view.rest.restlet.AbstractBaseRestlet.handle(AbstractBaseRestlet.java:44) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112) | |
| at org.restlet.Application.handle(Application.java:341) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at org.restlet.Router.handle(Router.java:504) | |
| at org.restlet.Filter.doHandle(Filter.java:150) | |
| at org.restlet.Filter.handle(Filter.java:195) | |
| at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124) | |
| at org.restlet.Component.handle(Component.java:673) | |
| at org.restlet.Server.handle(Server.java:331) | |
| at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68) | |
| at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147) | |
| at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:359) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:109) | |
| at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.ui.RESTfulExceptionTranslationFilter.doFilter(RESTfulExceptionTranslationFilter.java:78) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.providers.anonymous.AnonymousProcessingFilter.doFilterHttp(AnonymousProcessingFilter.java:105) | |
| at org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.ncbo.stanford.util.security.context.RESTfulContextIntegrationFilter.doFilter(RESTfulContextIntegrationFilter.java:251) | |
| at org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:371) | |
| at org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174) | |
| at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236) | |
| at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198) | |
| at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ncbo.stanford.view.filter.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) | |
| at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:859) | |
| at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:579) | |
| at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1555) | |
| at java.lang.Thread.run(Thread.java:619) |
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