- JSON-LD
- JSON-LD: JSON for Linked Data
- Gregg Kellog has agreed to pay us a visit in July to discuss
- OntoText Linked Life Data
- Linked Life Data UI
- 1 billion+ RDF resources
- Similar to NCBO Resource Index
- W3C Semantic Web Activities
- Audio/Video markup
- SPARQL 1.1
Paul R Alexander palexander
palexander
/ gist:1202209
Created
September 7, 2011 23:55
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| // This is broken | |
| function refreshOntList() { | |
| jQuery("#ontology_ontologyId").trigger("liszt:updated"); | |
| jQuery("#ontology_ontologyId").trigger("change"); | |
| } | |
| var select_groups = { | |
| init: function() { | |
| jQuery("#select_groups").bind("click", function(e){bp_popup_init(e)}); | |
| jQuery(".select_group_link").bind("click", function(e){select_groups.selectGroup(e)}); |
palexander
/ gist:1212780
Created
September 12, 2011 23:42
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| <%if controller.controller_name.eql?('tools')%> | |
| <li id="bp_nav_tools_active"><a href="/tools" title="Tools" class="bp_nav_link"></a></li> | |
| <%else%> | |
| <li id="bp_nav_tools"><a href="/Tools" title="Tools" class="bp_nav_link"></a></li> | |
| <%end%> |
palexander
/ gist:1212784
Created
September 12, 2011 23:43
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| #bp_nav_tools_active .bp_nav_link, | |
| #bp_nav_tools .bp_nav_link { | |
| width: 62px; | |
| } | |
| #bp_nav_tools_active, #bp_nav_tools:hover { | |
| background: url("/images/layout/bp_nav_sprite.png") -30px -602px; | |
| } | |
| #bp_nav_tools { |
palexander
/ gist:1222770
Created
September 16, 2011 18:38
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| import os, sys, pygame, random, math | |
| from pygame.locals import * | |
| if not pygame.font: print 'Warning, fonts disabled' | |
| if not pygame.mixer: print 'Warning, sound disabled' | |
palexander
/ gist:1248727
Created
September 28, 2011 18:12
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| 2011-09-28 11:11:19,771 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - textToAnnotate = [melanoma heart brain ] | |
| 2011-09-28 11:11:19,775 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - mgrepResults size = 128 | |
| 2011-09-28 11:11:19,775 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - Computing direct annotations..... | |
| 2011-09-28 11:11:20,167 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - [Duration for DIRECT Annotations for 'OBA_RESULT_9f10' = 00 hours, 00 minutes, 00 seconds.] | |
| 2011-09-28 11:11:20,167 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - Computing ISA_CLOSURE expanded annotations..... | |
| 2011-09-28 11:11:21,159 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl] - [Duration for ISA Annotations for 'OBA_RESULT_9f10' = 00 hours, 00 minutes, 00 seconds.] | |
| 2011-09-28 11:11:21,159 DEBUG [org.ncbo.stanford.obs.service.annotator.impl.AnnotatorServiceImpl |
palexander
/ gist:1296983
Created
October 18, 2011 22:49
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| java.lang.StackOverflowError | |
| at java.util.HashSet.add(HashSet.java:200) | |
| at org.coode.owlapi.rdf.model.RDFGraph.addTriple(RDFGraph.java:58) | |
| at org.coode.owlapi.rdf.model.RDFTranslator.addTriple(RDFTranslator.java:54) | |
| at org.coode.owlapi.rdf.model.RDFTranslator.addTriple(RDFTranslator.java:38) | |
| at org.coode.owlapi.rdf.model.AbstractTranslator.addSingleTripleAxiom(AbstractTranslator.java:764) | |
| at org.coode.owlapi.rdf.model.AbstractTranslator.addSingleTripleAxiom(AbstractTranslator.java:746) | |
| at org.coode.owlapi.rdf.model.AbstractTranslator.visit(AbstractTranslator.java:470) | |
| at uk.ac.manchester.cs.owl.owlapi.OWLDataPropertyAssertionAxiomImpl.accept(OWLDataPropertyAssertionAxiomImpl.java:73) | |
| at org.coode.owlapi.rdf.model.AbstractTranslator.processIfAnonymous(AbstractTranslator.java:941) |
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| # Sync with the remote master | |
| git pull | |
| # Force your clone to look like HEAD | |
| git reset --hard | |
| # AGAIN, A WARNING: This can really break stuff! | |
| # Run your filter branch command, replacing all instances of "password" with "your_password" | |
| # The example looks for Ruby files ("*.rb"), you can change this to match your needs |
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| # Two new A records | |
| *.stage.bioontology.org 171.67.213.48 | |
| *.bioportal.bioontology.org 171.67.213.45 | |
| ### Apache configuration | |
| # | |
| # Your VirtualHosts section | |
| # |
palexander
/ session_domain.rb
Created
January 11, 2012 23:38
— forked from bschwartz/session_domain.rb
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| # Adjust sessions so they work across subdomains | |
| # This also will work if your app runs on different TLDs | |
| # from: http://szeryf.wordpress.com/2008/01/21/cookie-handling-in-multi-domain-applications-in-ruby-on-rails/ | |
| # modified to work with Rails 2.3.0 | |
| module ActionControllerExtensions | |
| def self.included(base) | |
| base::Dispatcher.send :include, DispatcherExtensions | |
| end |