biobloom in Docker

Dockerfile

FROM ubuntu:18.04
RUN apt-get -y update && \
    apt-get -y install git build-essential autogen autotools-dev automake \
                       libsdsl-dev libsdsl3 libsparsehash-dev zlib1g-dev libboost-all-dev libgomp1 && \
    apt-get clean && \
    rm -rf /var/lib/apt/lists/*
WORKDIR /
RUN git clone --depth 1 --branch 2.3.2 https://github.com/bcgsc/biobloom.git && \
    cd /biobloom && \
    git submodule update --init && ./autogen.sh && \
    ./configure && make && make install && \
    cd / && rm -rf /biobloom && \
    apt-get -y purge build-essential autogen autotools-dev automake \
                     libsdsl-dev libsparsehash-dev zlib1g-dev libboost-all-dev && \
    apt-get -y autoremove --purge