Created
March 23, 2021 04:26
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rnasik in docker (via conda/mamba)
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| FROM continuumio/miniconda3 | |
| # | |
| # docker build -t pansapiens/rnasik:latest -t pansapiens/rnasik:1.5.4 . | |
| # docker run --rm -it -v $(pwd):/data pansapiens/rnasik --help | |
| # | |
| RUN conda install --yes -c conda-forge mamba | |
| RUN mamba install --yes -c bioconda -c conda-forge -c serine -c serine/label/dev -c anaconda -c defaults -c r -c conda-forge/label/broken \ | |
| python=3.6 rnasik=1.5.4 qualimap=2.2.2b=0 "pandas<1" && \ | |
| mamba clean -af --yes | |
| ENTRYPOINT ["RNAsik"] |
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https://github.com/mamba-org/micromamba-docker is a good alternative base image.