Mamba docker

Dockerfile

# https://micromamba-docker.readthedocs.io/en/latest/quick_start.html#running-commands-in-dockerfile-within-the-conda-environment

FROM mambaorg/micromamba:1.5.1
# RUN mkdir /home/mambauser/eggnog
COPY --chown=$MAMBA_USER:$MAMBA_USER environments.yml /tmp/env.yml
#  to activate the conda environment
ARG MAMBA_DOCKERFILE_ACTIVATE=1 
RUN micromamba install -y --file env.yml && \
     micromamba clean --all --yes

environments.yml

channels:
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - biopython=1.81=py39hd1e30aa_1
  - bzip2=1.0.8=h7f98852_4
  - ca-certificates=2023.7.22=hbcca054_0
  - ld_impl_linux-64=2.40=h41732ed_0
  - libblas=3.9.0=19_linux64_openblas
  - libcblas=3.9.0=19_linux64_openblas
  - libffi=3.4.2=h7f98852_5
  - libgcc-ng=13.2.0=h807b86a_2
  - libgfortran-ng=13.2.0=h69a702a_2
  - libgfortran5=13.2.0=ha4646dd_2
  - libgomp=13.2.0=h807b86a_2
  - liblapack=3.9.0=19_linux64_openblas
  - libnsl=2.0.1=hd590300_0
  - libopenblas=0.3.24=pthreads_h413a1c8_0
  - libsqlite=3.43.2=h2797004_0
  - libstdcxx-ng=13.2.0=h7e041cc_2
  - libuuid=2.38.1=h0b41bf4_0
  - libzlib=1.2.13=hd590300_5
  - ncurses=6.4=hcb278e6_0
  - numpy=1.26.0=py39h474f0d3_0
  - openssl=3.1.3=hd590300_0
  - pip=23.3=pyhd8ed1ab_0
  - python=3.9.18=h0755675_0_cpython
  - python_abi=3.9=4_cp39
  - readline=8.2=h8228510_1
  - setuptools=68.2.2=pyhd8ed1ab_0
  - tk=8.6.13=h2797004_0
  - tzdata=2023c=h71feb2d_0
  - wheel=0.41.2=pyhd8ed1ab_0
  - xz=5.2.6=h166bdaf_0