Paul Rougieux paulrougieux

MIT

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE

	""""""""""""""""""""""""""
	" Vundle package manager "
	""""""""""""""""""""""""""
	" Should be at the beginning
	set nocompatible " be iMproved, required
	filetype off " required

	" set the runtime path to include Vundle and initialize
	set rtp+=~/.vim/bundle/Vundle.vim
	call vundle#begin()

	Group: Controls 1
	Sample Wells Values MeanValue CV Od-bkgd-blank
	Anti-Hu Det A11 2.849 2.855 0.282 2.853
	A23 2.860
	Coat Control A12 0.161 0.160 0.530 0.159
	A24 0.160
	Diluent Standard 1 A9 0.114 0.113 1.379 0.104
	A21 0.112
	Diluent Standard 2 A8 0.012 0.013 2.817 0.012
	A20 0.013

	---
	title: "R Notebook"
	output:
	html_document:
	df_print: paged
	---

	```{r setup, include=FALSE}
	knitr::opts_chunk$set(echo = TRUE)
	library(reticulate)

	# Load the 2 functions below,
	# then test errors with:
	# downloadfile1(url="xxxx", destfile="/tmp/xxxx", logfile="~/rlog.txt")
	# ~/rlog.txt contains
	# Error in download.file(url = url, destfile = destfile, ...): cannot download all files
	#
	# then
	#
	# downloadfile2(url="xxxx", destfile="/tmp/xxxx", logfile="~/rlog.txt")
	# ~/rlog.txt contains the warning message

	#' Extract link texts and urls from a web page
	#' @param url character an url
	#' @return a data frame of link text and urls
	#' @examples
	#' \dontrun{
	#' scraplinks("http://localhost/")
	#' glinks <- scraplinks("http://google.com/")
	#' }
	#' @export
	scraplinks <- function(url){

	#LyX 2.1 created this file. For more info see http://www.lyx.org/
	\lyxformat 474
	\begin_document
	\begin_header
	\textclass scrbook
	\use_default_options true
	\begin_modules
	customHeadersFooters
	\end_modules
	\maintain_unincluded_children false

	library(dplyr)
	library(lazyeval)
	Species <- "virginica"
	# The Species variable is interpreted
	# in the context of the data frame
	iris %>%
	filter_(Species == Species) %>%
	nrow()
	# 150

	<<1stgenerationxtunitroot, results='asis'>>=
	library(xtable)
	x <- matrix(rnorm(60), ncol = 10)
	x.big <- xtable(x,label='tabbig', caption='Example of longtable')
	names(x.big) <- LETTERS[1:10]
	names(x.big)[9] <- paste('I','footnote') # I put the tag on I letter
	print(x.big,tabular.environment='longtable',floating=FALSE,
	sanitize.text.function=function(str)gsub("footnote","\\footnote{my tricky footnote !!}",str,fixed=TRUE))
	@