Skip to content

Instantly share code, notes, and snippets.

@pavgup
Last active October 23, 2015 10:00
Show Gist options
  • Save pavgup/de8d7399b05801007dc0 to your computer and use it in GitHub Desktop.
Save pavgup/de8d7399b05801007dc0 to your computer and use it in GitHub Desktop.
quick list of smiles
String smiles = "c1cccn1c2cccn2";
String smiles = "[H]c2c([H])c(c1c(nc(n1([H]))C(F)(F)F)c2Cl)Cl";
String smiles = "COC(=O)c2ccc3n([H])c1ccccc1c3(c2)";
String smiles = "c2cc1cccn1cc2";
String smiles = "c1c(c23)ccc(c34)ccc4ccc2c1";
String smiles = "Cc1cccc2sc3nncn3c12";
String smiles = "O=n1ccccc1";
String smiles = "[O-][n+]1ccccc1";
String smiles = "[Cl+3]([O-])([O-])([O-])[O-].[P+]([O-])(c1ccccc1)(c1ccccc1)c1cc([nH0+](C)c(c1)c1ccccc1)c1ccccc1";
String smiles = "c1(Cl)cc2c3cc(Cl)c(Cl)cc3c2cc1Cl";
String smiles = "c(c(ccc1)ccc2)(c1c(c3ccc4)c4)c23";
String smiles = "c2ccc1cc3c(cc1c2)c4cccc5cccc3c45";
String smiles = "Nc1c(c23)cccc3c4ccccc4c2cc1";
String smiles = "c12ccccc1cc3c4ccccc4c5c3c2ccc5";
String smiles = "c1c(c23)ccc(c34)ccc4ccc2c1";
String smiles = "C1=CC2=C3C(=CC=C4C3=C1C=C4)C=C2";
String smiles = "Cc1cccc2sc3nncn3c12";
String smiles = "c1ccc4c(c1)ccc5c3ccc2ccccc2c3[nH]c45";
String smiles = "c2cc1cccn1cc2";
String smiles = "C1c2c(c3c(c(O)cnc3)cc2)CC(=O)C1";
String smiles = "O=C(O3)C1=COC(OC4OC(CO)C(O)C(O)C4O)C2C1C3C=C2COC(C)=O";
String smiles = "CN1C=NC2=C1C(N(C)C(N2C)=O)=O";
String smiles = "CN(C)CCC2=CNC1=CC=CC(OP(O)(O)=O)=C12";
String smiles = "O=C(O)C1C(OC(C3=CC=CC=C3)=O)CC2N(C)C1CC2";
String smiles = "C1(C2(C)(C))C(C)=CCC2C1";
String smiles = "C1(C=C(C=C(C=C(C=C(C=CC%35=C%36)C%31=C%35C%32=C%33C%36=C%34)C%22=C%31C%23=C%32C%24=C%25C%33=C%26C%34=CC%27=CC%28=CC=C%29)C%14=C%22C%15=C%23C%16=C%24C%17=C%18C%25=C%19C%26=C%27C%20=C%28C%29=C%21)C6=C%14C7=C%15C8=C%16C9=C%17C%12=C%11C%18=C%10C%19=C%20C%21=CC%10=CC%11=CC(C=C%30)=C%12%13)=C(C6=C(C7=C(C8=C(C9=C%13C%30=C5)C5=C4)C4=C3)C3=C2)C2=CC=C1";
String smiles = "CC1(C(=C(CC(C1)O)C)C=CC(=CC=CC(=CC=CC=C(C=CC=C(C=CC1=C(CC(CC1(C)C)O)C)C)C)C)C)C";
String smiles = "NC(C(C)C)C(NC(C(C)O)C(NC(C(C)C)C(NC(CCC(N)=O)C(NC(CC([O-])[O-])C(NCC(NC(CC(N)=O)C(NC(Cc1ccccc1)C(NC(CO)C(NC(Cc2ccccc2)C(NC(CO)C(NC(CC(C)C)C(NC(CCC([O-])[O-])C(NC(CO)C(NC(C(C)C)C(NC(CCCC[N+])C(NC(CCCC[N+])C(NC(CC(C)C)C(NC(CCCC[N+])C(NC(CC([O-])[O-])C(NC(CC(C)C)C(NC(CCC(N)=O)C(NC(CCC([O-])[O-])C(N3CCCC3C(NC(CCC(N)=O)C(NC(CCC([O-])[O-])C(N4CCCC4C(NC(CCCNC([N+])[N+])C(NC(C(C)C)C(NCC(NC(CCCC[N+])C(NC(CC(C)C)C(NC(CCCNC([N+])[N+])C(NC(CC(N)=O)C(NC(Cc5ccccc5)C(NC(C)C(N6CCCC6C(NC(C(C)CC)C(N7CCCC7C(NCC(NC(CCC([O-])[O-])C(N8CCCC8C(NC(C(C)C)C(NC(C(C)C)C(N9CCCC9C(NC(C(C)CC)C(NC(CC(C)C)C(NC%19C[S][S]CC(C(NC(CCCC[N+])C(NC(CCC([O-])[O-])C(N%10CCCC%10C(NC(CC(N)=O)C(NC(C)C(NC(CCC(N)=O)C(NC(CCC([O-])[O-])C(NC(C(C)CC)C(NC(CC(C)C)C(NC(CCC(N)=O)C(NC(CCCNC([N+])[N+])C(NC(CC(C)C)C(NC(CCC([O-])[O-])C(NC(CCC([O-])[O-])C(NC(C(C)CC)C(NC(C)C(NC(CCC([O-])[O-])C(NC(CC([O-])[O-])C(N%11CCCC%11C(NCC(NC(C(C)O)C(NC%14C[S][S]CC%13C(NC(C(C)O)C(NCC(NC(C[S][S]CC(C(NC(C)C(NC(Cc%12ccc(O)cc%12)C(NC(C)C(NC(C)C(N%13)=O)=O)=O)=O)=O)NC(=O)C(C(C)CC)NC(=O)C(CCC([O-])[O-])NC%14=O)C(O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)NC(=O)C(CC(C)C)NC(=O)C%15CCCN%15C(=O)C(CCCC[N+])NC(=O)C(CC(C)C)NC(=O)C(CCC([O-])[O-])NC(=O)C(CCC([O-])[O-])NC(=O)C%16CCCN%16C(=O)C(Cc%17ccccc%17)NC(=O)C(CC(N)=O)NC(=O)C%18CCCN%18C(=O)C(CC(N)=O)NC(=O)C(CO)NC%19=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O";
String smiles = "S(=O)(=O)(-O)-c1c2c(c(ccc2-N-c2ccccc2)-N=N-c2c3c(c(cc2)-N=N-c2c4c(c(ccc4)-S(=O)(=O)-O)ccc2)cccc3)ccc1";
String smiles = "n12:n:n:n:c:2:c:c:c:c:1";
String smiles = "c1cc[c-]c1";
String smiles = "c1ccccc1";
String smiles = "CC1(C(=C(CC(C1)O)C)C=CC(=CC=CC(=CC=CC=C(C=CC=C(C=CC1=C(CC(CC1(C)C)O)C)C)C)C)C)C";
String smiles = "CC(C(C8CCC(CC8)=O)C3C4C(CC5(CCC(C9=CC(C=CN%10)=C%10C=C9)CCCC5)C4)C2CCC1CCC7(CCC7)C6(CC6)C1C2C3)=O";
String smiles = "CC1=CCC2CC1C(C)2C";
String smiles = "[Na+]";
String smiles = "[K+]";
String smiles = "[Ni+2]";
String smiles = "[13C]";
String smiles = "[OH-]";
String smiles = "[Na+].[OH-]";
String smiles = "C-C";
String smiles = "c1cc-2c(cc1)C(c3c4c2onc4c(cc3N5CCCC5)N6CCCC6)=O";
String smiles = "*C";
String smiles = "[12*H2-]";
String smiles = "CC";
String smiles = "c1cScc1";
String smiles = "[H+]";
String smiles = "C.C.N.[Co].C.C.C.[H].[He].[H].[H].[H].[H].C.C.[H].[H].[H].[H].[H]";
String smiles = "[H]";
String smiles = "[H][O+]([H])[H]";
String smiles = "Nc4cc3[n+](c2c(c1c(cccc1)cc2)nc3c5c4cccc5)c6c7c(ccc6)cccc7";
String smiles = "[c+]1ccccc1";
String smiles = "c1ccc[NH]1";
String smiles = "c1ccc[NH]1";
String smiles = "[CH2]CNC";
String smiles = "Cn1cccc1";
String smiles = "[cH-]1cccc1";
String smiles = "Nc1ncnc2[nH]cnc12";
String smiles = "C";
String smiles = "[W]";
String smiles = "CC";
String smiles = "C=C";
String smiles = "C#C";
String smiles = "CCC";
String smiles = "C1CCCCC1";
String smiles = "c1=cc=cc=c1";
String smiles = "c1ccccc1";
String smiles = "CC=CBr";
String smiles = "C=%10C=CC=C%02C=%10N(C)CCC%02";
String smiles = "c1ccccc1C1=CC=CC=C1";
String smiles2 = "C%21=%01C=CC=C%02C=%01N(C)CCC%02.C%21c%02ccccc%02";
String smiles = "C=1C=CC=CC=1";
String smiles = "[C-]#[O+]";
String smiles = "CS(=O)(=O)[O-].[Na+]";
String smiles = "[F+]=C-[C-]";
String smiles = "[s+]1c2c(nc3c1cccc3)cccc2";
String smiles = "[nH]1cccc1";
String smiles = "n1([H])cccc1";
String smiles = "n1cccc1";
String smiles = "[n-]1cccc1";
String smiles = "[nH]1cncc1";
String smiles = "n1([H])cncc1";
String smiles = "n1cncc1";
String smiles = "n1cc[nH]c1";
String smiles = "n1ccccc1";
String smiles = "n1cnccc1";
String smiles1 = "c1ccc2cc[nH]c2(c1)";
String smiles1 = "C1(NC=C2)=C2C=CC=C1";
String smiles = "[H]B1([H])HB([H]1)([H])[H]";
c1cccn1c2cccn2
[H]c2c([H])c(c1c(nc(n1([H]))C(F)(F)F)c2Cl)Cl
COC(=O)c2ccc3n([H])c1ccccc1c3(c2)
c2cc1cccn1cc2
c1c(c23)ccc(c34)ccc4ccc2c1
Cc1cccc2sc3nncn3c12
O=n1ccccc1
[O-][n+]1ccccc1
[Cl+3]([O-])([O-])([O-])[O-].[P+]([O-])(c1ccccc1)(c1ccccc1)c1cc([nH0+](C)c(c1)c1ccccc1)c1ccccc1
c1(Cl)cc2c3cc(Cl)c(Cl)cc3c2cc1Cl
c(c(ccc1)ccc2)(c1c(c3ccc4)c4)c23
c2ccc1cc3c(cc1c2)c4cccc5cccc3c45
Nc1c(c23)cccc3c4ccccc4c2cc1
c12ccccc1cc3c4ccccc4c5c3c2ccc5
c1c(c23)ccc(c34)ccc4ccc2c1
C1=CC2=C3C(=CC=C4C3=C1C=C4)C=C2
Cc1cccc2sc3nncn3c12
c1ccc4c(c1)ccc5c3ccc2ccccc2c3[nH]c45
c2cc1cccn1cc2
C1c2c(c3c(c(O)cnc3)cc2)CC(=O)C1
O=C(O3)C1=COC(OC4OC(CO)C(O)C(O)C4O)C2C1C3C=C2COC(C)=O
CN1C=NC2=C1C(N(C)C(N2C)=O)=O
CN(C)CCC2=CNC1=CC=CC(OP(O)(O)=O)=C12
O=C(O)C1C(OC(C3=CC=CC=C3)=O)CC2N(C)C1CC2
C1(C2(C)(C))C(C)=CCC2C1
C1(C=C(C=C(C=C(C=C(C=CC%35=C%36)C%31=C%35C%32=C%33C%36=C%34)C%22=C%31C%23=C%32C%24=C%25C%33=C%26C%34=CC%27=CC%28=CC=C%29)C%14=C%22C%15=C%23C%16=C%24C%17=C%18C%25=C%19C%26=C%27C%20=C%28C%29=C%21)C6=C%14C7=C%15C8=C%16C9=C%17C%12=C%11C%18=C%10C%19=C%20C%21=CC%10=CC%11=CC(C=C%30)=C%12%13)=C(C6=C(C7=C(C8=C(C9=C%13C%30=C5)C5=C4)C4=C3)C3=C2)C2=CC=C1
CC1(C(=C(CC(C1)O)C)C=CC(=CC=CC(=CC=CC=C(C=CC=C(C=CC1=C(CC(CC1(C)C)O)C)C)C)C)C)C
NC(C(C)C)C(NC(C(C)O)C(NC(C(C)C)C(NC(CCC(N)=O)C(NC(CC([O-])[O-])C(NCC(NC(CC(N)=O)C(NC(Cc1ccccc1)C(NC(CO)C(NC(Cc2ccccc2)C(NC(CO)C(NC(CC(C)C)C(NC(CCC([O-])[O-])C(NC(CO)C(NC(C(C)C)C(NC(CCCC[N+])C(NC(CCCC[N+])C(NC(CC(C)C)C(NC(CCCC[N+])C(NC(CC([O-])[O-])C(NC(CC(C)C)C(NC(CCC(N)=O)C(NC(CCC([O-])[O-])C(N3CCCC3C(NC(CCC(N)=O)C(NC(CCC([O-])[O-])C(N4CCCC4C(NC(CCCNC([N+])[N+])C(NC(C(C)C)C(NCC(NC(CCCC[N+])C(NC(CC(C)C)C(NC(CCCNC([N+])[N+])C(NC(CC(N)=O)C(NC(Cc5ccccc5)C(NC(C)C(N6CCCC6C(NC(C(C)CC)C(N7CCCC7C(NCC(NC(CCC([O-])[O-])C(N8CCCC8C(NC(C(C)C)C(NC(C(C)C)C(N9CCCC9C(NC(C(C)CC)C(NC(CC(C)C)C(NC%19C[S][S]CC(C(NC(CCCC[N+])C(NC(CCC([O-])[O-])C(N%10CCCC%10C(NC(CC(N)=O)C(NC(C)C(NC(CCC(N)=O)C(NC(CCC([O-])[O-])C(NC(C(C)CC)C(NC(CC(C)C)C(NC(CCC(N)=O)C(NC(CCCNC([N+])[N+])C(NC(CC(C)C)C(NC(CCC([O-])[O-])C(NC(CCC([O-])[O-])C(NC(C(C)CC)C(NC(C)C(NC(CCC([O-])[O-])C(NC(CC([O-])[O-])C(N%11CCCC%11C(NCC(NC(C(C)O)C(NC%14C[S][S]CC%13C(NC(C(C)O)C(NCC(NC(C[S][S]CC(C(NC(C)C(NC(Cc%12ccc(O)cc%12)C(NC(C)C(NC(C)C(N%13)=O)=O)=O)=O)=O)NC(=O)C(C(C)CC)NC(=O)C(CCC([O-])[O-])NC%14=O)C(O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)NC(=O)C(CC(C)C)NC(=O)C%15CCCN%15C(=O)C(CCCC[N+])NC(=O)C(CC(C)C)NC(=O)C(CCC([O-])[O-])NC(=O)C(CCC([O-])[O-])NC(=O)C%16CCCN%16C(=O)C(Cc%17ccccc%17)NC(=O)C(CC(N)=O)NC(=O)C%18CCCN%18C(=O)C(CC(N)=O)NC(=O)C(CO)NC%19=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O)=O
S(=O)(=O)(-O)-c1c2c(c(ccc2-N-c2ccccc2)-N=N-c2c3c(c(cc2)-N=N-c2c4c(c(ccc4)-S(=O)(=O)-O)ccc2)cccc3)ccc1
n12:n:n:n:c:2:c:c:c:c:1
c1cc[c-]c1
c1ccccc1
CC1(C(=C(CC(C1)O)C)C=CC(=CC=CC(=CC=CC=C(C=CC=C(C=CC1=C(CC(CC1(C)C)O)C)C)C)C)C)C
CC(C(C8CCC(CC8)=O)C3C4C(CC5(CCC(C9=CC(C=CN%10)=C%10C=C9)CCCC5)C4)C2CCC1CCC7(CCC7)C6(CC6)C1C2C3)=O
CC1=CCC2CC1C(C)2C
[Na+]
[K+]
[Ni+2]
[13C]
[OH-]
[Na+].[OH-]
C-C
c1cc-2c(cc1)C(c3c4c2onc4c(cc3N5CCCC5)N6CCCC6)=O
*C
[12*H2-]
CC
c1cScc1
[H+]
C.C.N.[Co].C.C.C.[H].[He].[H].[H].[H].[H].C.C.[H].[H].[H].[H].[H]
[H]
[H][O+]([H])[H]
Nc4cc3[n+](c2c(c1c(cccc1)cc2)nc3c5c4cccc5)c6c7c(ccc6)cccc7
[c+]1ccccc1
c1ccc[NH]1
c1ccc[NH]1
[CH2]CNC
Cn1cccc1
[cH-]1cccc1
Nc1ncnc2[nH]cnc12
C
[W]
CC
C=C
C#C
CCC
C1CCCCC1
c1=cc=cc=c1
c1ccccc1
CC=CBr
C=%10C=CC=C%02C=%10N(C)CCC%02
c1ccccc1C1=CC=CC=C1
String smiles2 = "C%21=%01C=CC=C%02C=%01N(C)CCC%02.C%21c%02ccccc%02
C=1C=CC=CC=1
[C-]#[O+]
CS(=O)(=O)[O-].[Na+]
[F+]=C-[C-]
[s+]1c2c(nc3c1cccc3)cccc2
[nH]1cccc1
n1([H])cccc1
n1cccc1
[n-]1cccc1
[nH]1cncc1
n1([H])cncc1
n1cncc1
n1cc[nH]c1
n1ccccc1
n1cnccc1
String smiles1 = "c1ccc2cc[nH]c2(c1)
String smiles1 = "C1(NC=C2)=C2C=CC=C1
[H]B1([H])HB([H]1)([H])[H]
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment