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| install.packages('R.utils'); | |
| install.packages("https://cran.rstudio.com//src/contrib/Archive/SDMTools/SDMTools_1.1-221.2.tar.gz", repos = NULL) | |
| install.packages('BiocManager'); BiocManager::install('multtest') | |
| install.packages('remotes') | |
| remotes::install_version('Seurat', '2.3.4') # <- this is flaky. Sometimes it finds the older version and sometimes not | |
| # my sct package installation | |
| install.packages(c('roxygen2','rversions','devtools')) | |
| BiocManager::install(c('SingleCellExperiment', 'scater', 'scmap'), update = F) | |
| BiocManager::install('pheatmap', update=F) | |
| devtools::install_github('pcantalupo/sct', upgrade = 'never') | |
| install.packages(c('openxlsx','boxr')) | |
| library(Seurat) | |
| library(sct) | |
| library(openxlsx) | |
| library(boxr) | |
| library(dplyr) |
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