Created
May 8, 2019 10:43
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(partial) EasyBuild log for failed build of /scratch/eb-e6muzg/files_pr8270/g/GEMMA/GEMMA-0.98.1-foss-2018b.eb (PR #8270)
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| == 2019-05-08 12:43:28,392 easyblock.py:278 INFO This is EasyBuild 3.9.0 (framework: 3.9.0, easyblocks: 3.9.0) on host login20.cluster.bc2.ch. | |
| == 2019-05-08 12:43:28,392 easyblock.py:284 INFO This is easyblock MakeCp from module easybuild.easyblocks.generic.makecp (/scicore/soft/apps/EasyBuild/3.9.0/lib/python2.7/site-packages/easybuild_easyblocks-3.9.0-py2.7.egg/easybuild/easyblocks/generic/makecp.py) | |
| == 2019-05-08 12:43:28,393 easyblock.py:834 INFO Build dir set to /scicore/home/scicore/escobar/.local/easybuild/build/GEMMA/0.98.1/foss-2018b | |
| == 2019-05-08 12:43:28,393 easyblock.py:894 INFO Software install dir set to /scicore/home/scicore/escobar/.local/easybuild/software/GEMMA/0.98.1-foss-2018b | |
| == 2019-05-08 12:43:28,393 easyblock.py:899 INFO Module install dir set to /scicore/home/scicore/escobar/.local/easybuild/modules/all | |
| == 2019-05-08 12:43:28,393 easyblock.py:263 INFO Init completed for application name GEMMA version 0.98.1 | |
| == 2019-05-08 12:43:28,394 easyblock.py:2980 INFO Obtained application instance of for GEMMA (easyblock: MakeCp) | |
| == 2019-05-08 12:43:28,395 one.py:146 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2019-05-08 12:43:28,396 filetools.py:1200 INFO Creating directory /scratch/eb-e6muzg/reprod_20190508124328_21659 (parents: True, set_gid: False, sticky: False) | |
| == 2019-05-08 12:43:28,396 easyblock.py:3150 INFO Dumped easyconfig instance to /scratch/eb-e6muzg/reprod_20190508124328_21659/GEMMA-0.98.1-foss-2018b.eb | |
| == 2019-05-08 12:43:28,397 filetools.py:1200 INFO Creating directory /scratch/eb-e6muzg/reprod_20190508124328_21659/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2019-05-08 12:43:28,397 filetools.py:1670 INFO /scicore/soft/apps/EasyBuild/3.9.0/lib/python2.7/site-packages/easybuild_easyblocks-3.9.0-py2.7.egg/easybuild/easyblocks/generic/makecp.py copied to /scratch/eb-e6muzg/reprod_20190508124328_21659/easyblocks/makecp.py | |
| == 2019-05-08 12:43:28,397 easyblock.py:3165 INFO Dumped easyblock makecp.py required for reproduction to /scratch/eb-e6muzg/reprod_20190508124328_21659/easyblocks | |
| == 2019-05-08 12:43:28,398 filetools.py:1670 INFO /scicore/soft/apps/EasyBuild/3.9.0/lib/python2.7/site-packages/easybuild_easyblocks-3.9.0-py2.7.egg/easybuild/easyblocks/generic/configuremake.py copied to /scratch/eb-e6muzg/reprod_20190508124328_21659/easyblocks/configuremake.py | |
| == 2019-05-08 12:43:28,398 easyblock.py:3165 INFO Dumped easyblock configuremake.py required for reproduction to /scratch/eb-e6muzg/reprod_20190508124328_21659/easyblocks | |
| == 2019-05-08 12:43:28,399 easyblock.py:1590 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2019-05-08 12:43:28,399 build_log.py:252 INFO building and installing GEMMA/0.98.1-foss-2018b... | |
| == 2019-05-08 12:43:28,399 build_log.py:252 INFO fetching files... | |
| == 2019-05-08 12:43:28,399 easyblock.py:2760 INFO Starting fetch step | |
| == 2019-05-08 12:43:28,400 easyblock.py:2766 INFO Running method fetch_step part of step fetch | |
| == 2019-05-08 12:43:28,400 easyblock.py:1671 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2019-05-08 12:43:28,401 filetools.py:394 INFO Command eb found at /scicore/soft/apps/EasyBuild/3.9.0/bin/eb | |
| == 2019-05-08 12:43:28,402 easyblock.py:662 INFO Found file 0.98.1.tar.gz at /scicore/home/scicore/escobar/.local/easybuild/sources/g/GEMMA/0.98.1.tar.gz | |
| == 2019-05-08 12:43:28,402 easyblock.py:392 INFO Added sources: [{'path': '/scicore/home/scicore/escobar/.local/easybuild/sources/g/GEMMA/0.98.1.tar.gz', 'cmd': None, 'finalpath': '/scicore/home/scicore/escobar/.local/easybuild/build/GEMMA/0.98.1/foss-2018b', 'name': '0.98.1.tar.gz', 'checksum': '6beeed4a9e727a96fdea9e86e39bbe9cbc9f0540ad3a1053814e95b0863a7e6b'}] | |
| == 2019-05-08 12:43:28,402 easyblock.py:1712 INFO no patches provided | |
| == 2019-05-08 12:43:28,540 easyblock.py:1722 INFO md5 checksum for /scicore/home/scicore/escobar/.local/easybuild/sources/g/GEMMA/0.98.1.tar.gz: 7328f26f78d4953ec0d97668a33ccf5c | |
| == 2019-05-08 12:43:28,769 easyblock.py:1722 INFO sha256 checksum for /scicore/home/scicore/escobar/.local/easybuild/sources/g/GEMMA/0.98.1.tar.gz: 6beeed4a9e727a96fdea9e86e39bbe9cbc9f0540ad3a1053814e95b0863a7e6b | |
| == 2019-05-08 12:43:28,770 easyblock.py:1757 INFO Checking dirs that need to be created: ['/scicore/home/scicore/escobar/.local/easybuild/software/GEMMA/0.98.1-foss-2018b', '/scicore/home/scicore/escobar/.local/easybuild/modules/all/GEMMA', '/scicore/home/scicore/escobar/.local/easybuild/modules/bio/GEMMA'] | |
| == 2019-05-08 12:43:28,770 configuremake.py:123 INFO Found recent config.guess at /scicore/home/scicore/escobar/.local/easybuild/sources/generic/eb_v3.9.0/ConfigureMake/config.guess, using it if required | |
| == 2019-05-08 12:43:28,770 build_log.py:252 INFO creating build dir, resetting environment... | |
| == 2019-05-08 12:43:28,771 easyblock.py:2760 INFO Starting ready step | |
| == 2019-05-08 12:43:28,771 easyblock.py:2766 INFO Running method check_readiness_step part of step ready | |
| == 2019-05-08 12:43:28,772 run.py:192 INFO running cmd: ulimit -u | |
| == 2019-05-08 12:43:28,782 easyblock.py:1609 INFO Setting parallelism: 20 | |
| == 2019-05-08 12:43:28,870 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2019-05-08 12:43:28,871 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2019-05-08 12:43:28,871 easyblock.py:1623 WARNING Loaded modules detected: ['EasyBuild/3.9.0'] | |
| == 2019-05-08 12:43:28,872 easyblock.py:2766 INFO Running method make_builddir part of step ready | |
| == 2019-05-08 12:43:28,872 easyblock.py:919 INFO Found old directory /scicore/home/scicore/escobar/.local/easybuild/build/GEMMA/0.98.1/foss-2018b | |
| == 2019-05-08 12:43:28,898 filetools.py:1296 INFO Path /scicore/home/scicore/escobar/.local/easybuild/build/GEMMA/0.98.1/foss-2018b successfully removed. | |
| == 2019-05-08 12:43:28,898 easyblock.py:926 INFO Removed old directory /scicore/home/scicore/escobar/.local/easybuild/build/GEMMA/0.98.1/foss-2018b | |
| == 2019-05-08 12:43:28,898 filetools.py:1200 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/build/GEMMA/0.98.1/foss-2018b (parents: True, set_gid: False, sticky: False) | |
| == 2019-05-08 12:43:28,899 easyblock.py:2766 INFO Running method reset_env part of step ready | |
| == 2019-05-08 12:43:28,899 easyblock.py:2766 INFO Running method handle_iterate_opts part of step ready | |
| == 2019-05-08 12:43:28,900 build_log.py:252 INFO unpacking... | |
| == 2019-05-08 12:43:28,900 easyblock.py:2760 INFO Starting source step | |
| == 2019-05-08 12:43:28,900 easyblock.py:2766 INFO Running method checksum_step part of step source | |
| == 2019-05-08 12:43:29,136 easyblock.py:1773 INFO Checksum verification for /scicore/home/scicore/escobar/.local/easybuild/sources/g/GEMMA/0.98.1.tar.gz using 6beeed4a9e727a96fdea9e86e39bbe9cbc9f0540ad3a1053814e95b0863a7e6b passed. | |
| == 2019-05-08 12:43:29,137 easyblock.py:2766 INFO Running method extract_step part of step source | |
| == 2019-05-08 12:43:29,137 easyblock.py:1841 INFO Unpacking source 0.98.1.tar.gz | |
| == 2019-05-08 12:43:29,138 run.py:192 INFO running cmd: tar xzf /scicore/home/scicore/escobar/.local/easybuild/sources/g/GEMMA/0.98.1.tar.gz | |
| == 2019-05-08 12:43:30,775 build_log.py:252 INFO patching... | |
| == 2019-05-08 12:43:30,775 easyblock.py:2760 INFO Starting patch step | |
| == 2019-05-08 12:43:30,776 easyblock.py:2766 INFO Running method patch_step part of step patch | |
| == 2019-05-08 12:43:30,776 build_log.py:252 INFO preparing... | |
| == 2019-05-08 12:43:30,776 easyblock.py:2760 INFO Starting prepare step | |
| == 2019-05-08 12:43:30,777 easyblock.py:2766 INFO Running method prepare_step part of step prepare | |
| == 2019-05-08 12:43:31,251 build_log.py:163 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Missing modules for dependencies (use --robot?): Eigen/3.3.4 (at easybuild/tools/toolchain/toolchain.py:420 in _check_dependencies) | |
| == 2019-05-08 12:43:31,252 easyblock.py:3010 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): Eigen/3.3.4 | |
| == 2019-05-08 12:43:31,252 easyblock.py:293 INFO Closing log for application name GEMMA version 0.98.1 |
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