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Created August 15, 2019 14:30
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EasyBuild test report for easyconfigs PR #8588
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easybuild_test_report_easyconfigs_pr8588_20193015-UTC-14-30-26.md

Test report for easybuilders/easybuild-easyconfigs#8588

Test result

Build succeeded for 0 out of 1 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

Time info

  • start: Thu, 15 Aug 2019 14:30:06 +0000 (UTC)
  • end: Thu, 15 Aug 2019 14:30:24 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 3.9.3
  • easybuild-easyblocks version: 3.9.3
  • command line:
eb --modules-tool=Lmod --buildpath=/scratch/escobar/easybuild --tmpdir=/scratch/escobar/easybuild/tmp --github-user=pescobar --from-pr=8588 -r -u -f
  • full configuration (includes defaults):
--allow-loaded-modules='EasyBuild'
--buildpath='/scratch/escobar/easybuild'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/scicore/home/scicore/escobar/.local/easybuild/containers'
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-debug
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fixed-installdir-naming-scheme
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-only
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-rebuild
--disable-recursive-module-unload
--disable-regtest
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--extended-dry-run-ignore-errors
--force
--from-pr='8588'
--github-user='pescobar'
--ignore-dirs='.git,.svn'
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--installpath='/scicore/home/scicore/escobar/.local/easybuild'
--job-backend='GC3Pie'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/scicore/home/scicore/escobar'
--job-polling-interval='30.0'
--lib64-fallback-sanity-check
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/scicore/home/scicore/escobar/.local/easybuild/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pr-target-repo='easybuild-easyconfigs'
--pre-create-installdir
--repository='FileRepository'
--repositorypath='/scicore/home/scicore/escobar/.local/easybuild/ebfiles_repo'
--robot-paths=''
--robot='/scicore/soft/apps/EasyBuild/3.9.3/lib/python2.7/site-packages/easybuild_easyconfigs-3.9.3-py2.7.egg/easybuild/easyconfigs'
--sourcepath='/scicore/home/scicore/escobar/.local/easybuild/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--tmpdir='/scratch/escobar/easybuild/tmp'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'

System info

  • core count: 20
  • cpu model: Intel(R) Xeon(R) CPU E5-2630 v4 @ 2.20GHz
  • cpu speed: 3100.0
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.5 20150623 (Red Hat 4.8.5-28) (GCC) ;
  • glibc version: 2.17
  • hostname: worker01.cluster.bc2.ch
  • os name: centos linux
  • os type: Linux
  • os version: 7.5.1804
  • platform name: x86_64-unknown-linux
  • python version: 2.7.5 (default, Jul 13 2018, 13:06:57) ; [GCC 4.8.5 20150623 (Red Hat 4.8.5-28)]
  • system gcc path: /bin/gcc
  • system python path: /bin/python
  • total memory: 257670

List of loaded modules

  • EasyBuild/3.9.3

Environment

BASH_FUNC_ml() = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
EBDEVELEASYBUILD = /scicore/soft/apps/EasyBuild/3.9.3/easybuild/EasyBuild-3.9.3-easybuild-devel
EBROOTEASYBUILD = /scicore/soft/apps/EasyBuild/3.9.3
EBVERSIONEASYBUILD = 3.9.3
EDITOR = vim
FANCYLOGGER_IGNORE_MPI4PY = 1
HISTCONTROL = ignoredups
HISTSIZE = 100000
HOME = /scicore/home/scicore/escobar
HOSTNAME = worker01.cluster.bc2.ch
LANG = en_US.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LESS_TERMCAP_mb = �[01;31m
LESS_TERMCAP_md = �[01;31m
LESS_TERMCAP_me = �[0m
LESS_TERMCAP_se = �[0m
LESS_TERMCAP_so = �[01;44;33m
LESS_TERMCAP_ue = �[0m
LESS_TERMCAP_us = �[01;32m
LMOD_CMD = /export/soft/lua_lmod/centos7/lmod/lmod/libexec/lmod
LMOD_DIR = /export/soft/lua_lmod/centos7/lmod/lmod/libexec
LMOD_DISABLE_SAME_NAME_AUTOSWAP = yes
LMOD_PKG = /export/soft/lua_lmod/centos7/lmod/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_SITE_MSG_FILE = /export/soft/lua_lmod/centos7/lmod/lmod/../etc/scicore_site_msgs.lua
LMOD_VERSION = 7.8.11
LOADEDMODULES = EasyBuild/3.9.3
LOGNAME = escobar
LS_COLORS = rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
MAIL = /var/spool/mail/escobar
MANPATH = :
MODULEPATH = /scicore/soft/modules/bio:/scicore/soft/modules/chem:/scicore/soft/modules/compiler:/scicore/soft/modules/data:/scicore/soft/modules/devel:/scicore/soft/modules/lang:/scicore/soft/modules/lib:/scicore/soft/modules/math:/scicore/soft/modules/mpi:/scicore/soft/modules/numlib:/scicore/soft/modules/perf:/scicore/soft/modules/phys:/scicore/soft/modules/system:/scicore/soft/modules/toolchain:/scicore/soft/modules/tools:/scicore/soft/modules/vis
MODULESHOME = /export/soft/lua_lmod/centos7/lmod/lmod
PATH = /scicore/soft/apps/EasyBuild/3.9.3/bin:/export/soft/lua_lmod/centos7/lmod/lmod/libexec:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin:/scicore/home/scicore/escobar/bin
PROMPT_COMMAND = echo -ne "\033]0;${HOSTNAME%%.*}: ${PWD##*/}\007"
PWD = /scicore/home/scicore/escobar
PYTHONOPTIMIZE = 1
PYTHONPATH = /scicore/soft/apps/EasyBuild/3.9.3/lib/python2.7/site-packages
SBATCH_EXPORT = NONE
SHELL = /bin/bash
SHLVL = 2
SQUEUE_FORMAT2 = jobid:10,partition:20,name,username:10,state:10,timeused:12,timelimit:12,qos:10,reasonlist:40
TEMP = /scratch
TEMPDIR = /scratch
TERM = xterm-256color
TMP = /scratch
TMPDIR = /scratch
USER = escobar
_ = /bin/python2
_LMFILES_ = /scicore/soft/modules/tools/EasyBuild/3.9.3.lua
_ModuleTable001_ = 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
_ModuleTable002_ = 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
_ModuleTable003_ = 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
_ModuleTable004_ = L3NjaWNvcmUvc29mdC9tb2R1bGVzL3N5c3RlbTovc2NpY29yZS9zb2Z0L21vZHVsZXMvdG9vbGNoYWluOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy90b29sczovc2NpY29yZS9zb2Z0L21vZHVsZXMvdmlzIix9
_ModuleTable_Sz_ = 4
__LMOD_REF_COUNT_LOADEDMODULES = EasyBuild/3.9.3:1
__LMOD_REF_COUNT_MODULEPATH = /scicore/soft/modules/bio:1;/scicore/soft/modules/chem:1;/scicore/soft/modules/compiler:1;/scicore/soft/modules/data:1;/scicore/soft/modules/devel:1;/scicore/soft/modules/lang:2;/scicore/soft/modules/lib:1;/scicore/soft/modules/math:1;/scicore/soft/modules/mpi:1;/scicore/soft/modules/numlib:1;/scicore/soft/modules/perf:1;/scicore/soft/modules/phys:1;/scicore/soft/modules/system:1;/scicore/soft/modules/toolchain:1;/scicore/soft/modules/tools:1;/scicore/soft/modules/vis:1
__LMOD_REF_COUNT_PATH = /scicore/soft/apps/EasyBuild/3.9.3/bin:1;/export/soft/lua_lmod/centos7/lmod/lmod/libexec:1;/usr/local/bin:1;/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/opt/ibutils/bin:1;/scicore/home/scicore/escobar/bin:1
__LMOD_REF_COUNT_PYTHONPATH = /scicore/soft/apps/EasyBuild/3.9.3/lib/python2.7/site-packages:1
__LMOD_REF_COUNT__LMFILES_ = /scicore/soft/modules/tools/EasyBuild/3.9.3.lua:1
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