Created
May 8, 2019 09:59
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(partial) EasyBuild log for failed build of /scratch/eb-zWJAgO/files_pr5803/f/FoX/FoX-4.1.2-iomkl-2017b.eb (PR #5803)
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| == 2019-05-08 11:59:16,784 easyblock.py:278 INFO This is EasyBuild 3.9.0 (framework: 3.9.0, easyblocks: 3.9.0) on host login20.cluster.bc2.ch. | |
| == 2019-05-08 11:59:16,784 easyblock.py:284 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/scicore/soft/apps/EasyBuild/3.9.0/lib/python2.7/site-packages/easybuild_easyblocks-3.9.0-py2.7.egg/easybuild/easyblocks/generic/configuremake.pyo) | |
| == 2019-05-08 11:59:16,785 easyblock.py:834 INFO Build dir set to /scicore/home/scicore/escobar/.local/easybuild/build/FoX/4.1.2/iomkl-2017b | |
| == 2019-05-08 11:59:16,785 easyblock.py:894 INFO Software install dir set to /scicore/home/scicore/escobar/.local/easybuild/software/FoX/4.1.2-iomkl-2017b | |
| == 2019-05-08 11:59:16,785 easyblock.py:899 INFO Module install dir set to /scicore/home/scicore/escobar/.local/easybuild/modules/all | |
| == 2019-05-08 11:59:16,785 easyblock.py:263 INFO Init completed for application name FoX version 4.1.2 | |
| == 2019-05-08 11:59:16,786 easyblock.py:2980 INFO Obtained application instance of for FoX (easyblock: ConfigureMake) | |
| == 2019-05-08 11:59:16,787 one.py:146 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2019-05-08 11:59:16,788 filetools.py:1200 INFO Creating directory /scratch/eb-zWJAgO/reprod_20190508115916_4320 (parents: True, set_gid: False, sticky: False) | |
| == 2019-05-08 11:59:16,789 easyblock.py:3150 INFO Dumped easyconfig instance to /scratch/eb-zWJAgO/reprod_20190508115916_4320/FoX-4.1.2-iomkl-2017b.eb | |
| == 2019-05-08 11:59:16,789 filetools.py:1200 INFO Creating directory /scratch/eb-zWJAgO/reprod_20190508115916_4320/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2019-05-08 11:59:16,790 filetools.py:1670 INFO /scicore/soft/apps/EasyBuild/3.9.0/lib/python2.7/site-packages/easybuild_easyblocks-3.9.0-py2.7.egg/easybuild/easyblocks/generic/configuremake.py copied to /scratch/eb-zWJAgO/reprod_20190508115916_4320/easyblocks/configuremake.py | |
| == 2019-05-08 11:59:16,790 easyblock.py:3165 INFO Dumped easyblock configuremake.py required for reproduction to /scratch/eb-zWJAgO/reprod_20190508115916_4320/easyblocks | |
| == 2019-05-08 11:59:16,790 easyblock.py:1590 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2019-05-08 11:59:16,790 build_log.py:252 INFO building and installing FoX/4.1.2-iomkl-2017b... | |
| == 2019-05-08 11:59:16,791 build_log.py:252 INFO fetching files... | |
| == 2019-05-08 11:59:16,791 easyblock.py:2760 INFO Starting fetch step | |
| == 2019-05-08 11:59:16,791 easyblock.py:2766 INFO Running method fetch_step part of step fetch | |
| == 2019-05-08 11:59:16,791 easyblock.py:1671 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2019-05-08 11:59:16,792 filetools.py:394 INFO Command eb found at /scicore/soft/apps/EasyBuild/3.9.0/bin/eb | |
| == 2019-05-08 11:59:16,797 filetools.py:1200 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/sources/f/FoX (parents: True, set_gid: False, sticky: False) | |
| == 2019-05-08 11:59:17,459 filetools.py:532 INFO Downloaded file FoX-4.1.2.tar.gz from url http://homepages.see.leeds.ac.uk/~earawa/FoX/source/FoX-4.1.2.tar.gz to /scicore/home/scicore/escobar/.local/easybuild/sources/f/FoX/FoX-4.1.2.tar.gz | |
| == 2019-05-08 11:59:17,459 filetools.py:562 INFO Successful download of file FoX-4.1.2.tar.gz from url http://homepages.see.leeds.ac.uk/~earawa/FoX/source/FoX-4.1.2.tar.gz to path /scicore/home/scicore/escobar/.local/easybuild/sources/f/FoX/FoX-4.1.2.tar.gz | |
| == 2019-05-08 11:59:17,459 easyblock.py:746 INFO Successfully downloaded source file FoX-4.1.2.tar.gz from http://homepages.see.leeds.ac.uk/~earawa/FoX/source/FoX-4.1.2.tar.gz | |
| == 2019-05-08 11:59:17,460 easyblock.py:392 INFO Added sources: [{'path': '/scicore/home/scicore/escobar/.local/easybuild/sources/f/FoX/FoX-4.1.2.tar.gz', 'cmd': None, 'finalpath': '/scicore/home/scicore/escobar/.local/easybuild/build/FoX/4.1.2/iomkl-2017b', 'name': 'FoX-4.1.2.tar.gz', 'checksum': '3b749138229e7808d0009a97e2ac47815ad5278df6879a9cc64351a7921ba06f'}] | |
| == 2019-05-08 11:59:17,460 easyblock.py:1712 INFO no patches provided | |
| == 2019-05-08 11:59:17,462 easyblock.py:1722 INFO md5 checksum for /scicore/home/scicore/escobar/.local/easybuild/sources/f/FoX/FoX-4.1.2.tar.gz: e99bbf2950f2d0bf83be6151c305f27c | |
| == 2019-05-08 11:59:17,465 easyblock.py:1722 INFO sha256 checksum for /scicore/home/scicore/escobar/.local/easybuild/sources/f/FoX/FoX-4.1.2.tar.gz: 3b749138229e7808d0009a97e2ac47815ad5278df6879a9cc64351a7921ba06f | |
| == 2019-05-08 11:59:17,466 easyblock.py:1757 INFO Checking dirs that need to be created: ['/scicore/home/scicore/escobar/.local/easybuild/software/FoX/4.1.2-iomkl-2017b', '/scicore/home/scicore/escobar/.local/easybuild/modules/all/FoX', '/scicore/home/scicore/escobar/.local/easybuild/modules/lib/FoX'] | |
| == 2019-05-08 11:59:17,468 filetools.py:1200 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/software/FoX/4.1.2-iomkl-2017b (parents: True, set_gid: False, sticky: False) | |
| == 2019-05-08 11:59:17,470 filetools.py:1200 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/modules/all/FoX (parents: True, set_gid: False, sticky: False) | |
| == 2019-05-08 11:59:17,472 filetools.py:1200 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/modules/lib/FoX (parents: True, set_gid: False, sticky: False) | |
| == 2019-05-08 11:59:17,475 filetools.py:1200 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/sources/generic/eb_v3.9.0/ConfigureMake (parents: True, set_gid: False, sticky: False) | |
| == 2019-05-08 11:59:18,206 filetools.py:532 INFO Downloaded file config.guess from url https://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=59e2ce0e6b46bb47ef81b68b600ed087e14fdaad to /scicore/home/scicore/escobar/.local/easybuild/sources/generic/eb_v3.9.0/ConfigureMake/config.guess | |
| == 2019-05-08 11:59:18,207 filetools.py:562 INFO Successful download of file config.guess from url https://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=59e2ce0e6b46bb47ef81b68b600ed087e14fdaad to path /scicore/home/scicore/escobar/.local/easybuild/sources/generic/eb_v3.9.0/ConfigureMake/config.guess | |
| == 2019-05-08 11:59:18,208 filetools.py:1085 INFO Adjusting permissions recursively for /scicore/home/scicore/escobar/.local/easybuild/sources/generic/eb_v3.9.0/ConfigureMake/config.guess | |
| == 2019-05-08 11:59:18,209 configuremake.py:137 INFO Downloaded recent config.guess to /scicore/home/scicore/escobar/.local/easybuild/sources/generic/eb_v3.9.0/ConfigureMake/config.guess, using it if required | |
| == 2019-05-08 11:59:18,209 build_log.py:252 INFO creating build dir, resetting environment... | |
| == 2019-05-08 11:59:18,209 easyblock.py:2760 INFO Starting ready step | |
| == 2019-05-08 11:59:18,210 easyblock.py:2766 INFO Running method check_readiness_step part of step ready | |
| == 2019-05-08 11:59:18,212 run.py:192 INFO running cmd: ulimit -u | |
| == 2019-05-08 11:59:18,220 easyblock.py:1609 INFO Setting parallelism: 20 | |
| == 2019-05-08 11:59:18,287 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2019-05-08 11:59:18,288 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2019-05-08 11:59:18,288 easyblock.py:1623 WARNING Loaded modules detected: ['EasyBuild/3.9.0'] | |
| == 2019-05-08 11:59:18,288 easyblock.py:2766 INFO Running method make_builddir part of step ready | |
| == 2019-05-08 11:59:18,290 filetools.py:1200 INFO Creating directory /scicore/home/scicore/escobar/.local/easybuild/build/FoX/4.1.2/iomkl-2017b (parents: True, set_gid: False, sticky: False) | |
| == 2019-05-08 11:59:18,292 easyblock.py:2766 INFO Running method reset_env part of step ready | |
| == 2019-05-08 11:59:18,293 easyblock.py:2766 INFO Running method handle_iterate_opts part of step ready | |
| == 2019-05-08 11:59:18,293 build_log.py:252 INFO unpacking... | |
| == 2019-05-08 11:59:18,293 easyblock.py:2760 INFO Starting source step | |
| == 2019-05-08 11:59:18,293 easyblock.py:2766 INFO Running method checksum_step part of step source | |
| == 2019-05-08 11:59:18,295 easyblock.py:1773 INFO Checksum verification for /scicore/home/scicore/escobar/.local/easybuild/sources/f/FoX/FoX-4.1.2.tar.gz using 3b749138229e7808d0009a97e2ac47815ad5278df6879a9cc64351a7921ba06f passed. | |
| == 2019-05-08 11:59:18,295 easyblock.py:2766 INFO Running method extract_step part of step source | |
| == 2019-05-08 11:59:18,295 easyblock.py:1841 INFO Unpacking source FoX-4.1.2.tar.gz | |
| == 2019-05-08 11:59:18,297 run.py:192 INFO running cmd: tar xzf /scicore/home/scicore/escobar/.local/easybuild/sources/f/FoX/FoX-4.1.2.tar.gz | |
| == 2019-05-08 11:59:18,373 build_log.py:252 INFO patching... | |
| == 2019-05-08 11:59:18,373 easyblock.py:2760 INFO Starting patch step | |
| == 2019-05-08 11:59:18,374 easyblock.py:2766 INFO Running method patch_step part of step patch | |
| == 2019-05-08 11:59:18,374 build_log.py:252 INFO preparing... | |
| == 2019-05-08 11:59:18,374 easyblock.py:2760 INFO Starting prepare step | |
| == 2019-05-08 11:59:18,374 easyblock.py:2766 INFO Running method prepare_step part of step prepare | |
| == 2019-05-08 11:59:18,759 build_log.py:163 ERROR EasyBuild crashed with an error (at ?:124 in __init__): No module found for toolchain: iomkl/2017b (at easybuild/tools/toolchain/toolchain.py:599 in _load_modules) | |
| == 2019-05-08 11:59:18,759 easyblock.py:3010 WARNING build failed (first 300 chars): No module found for toolchain: iomkl/2017b | |
| == 2019-05-08 11:59:18,759 easyblock.py:293 INFO Closing log for application name FoX version 4.1.2 |
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