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pescobar/easybuild_test_report_10888_easybuilders_preasybuild-easyconfigs_20203930-UTC-20-39-04.md

Created June 30, 2020 20:39
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EasyBuild test report for easybuilders/easybuild-easyconfigs PR #10888
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easybuild_test_report_10888_easybuilders_preasybuild-easyconfigs_20203930-UTC-20-39-04.md

Test report for easybuilders/easybuild-easyconfigs#10888

Test result

Build succeeded for 9 out of 9 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS GCCcore-9.3.0.eb
  • SUCCESS zlib-1.2.11-GCCcore-9.3.0.eb
  • SUCCESS help2man-1.47.12-GCCcore-9.3.0.eb
  • SUCCESS M4-1.4.18-GCCcore-9.3.0.eb
  • SUCCESS Bison-3.5.3-GCCcore-9.3.0.eb
  • SUCCESS flex-2.6.4-GCCcore-9.3.0.eb
  • SUCCESS binutils-2.34-GCCcore-9.3.0.eb
  • SUCCESS GCC-9.3.0.eb
  • SUCCESS seqtk-1.3-GCC-9.3.0.eb

Time info

  • start: Tue, 30 Jun 2020 20:02:01 +0000 (UTC)
  • end: Tue, 30 Jun 2020 20:39:04 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.2.1
  • easybuild-easyblocks version: 4.2.1
  • command line:
eb --configfiles=/users/pescobar/easybuild-cfgs/test.cfg --github-user=pescobar --from-pr=10888 --upload-test-report -r
  • full configuration (includes defaults):
--allow-loaded-modules='EasyBuild'
--buildpath='/tmp/pescobar/eb-build'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--configfiles='/users/pescobar/easybuild-cfgs/test.cfg'
--container-type='singularity'
--containerpath='/users/pescobar/.local/easybuild/containers'
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-force
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-rebuild
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-try-update-deps
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--extended-dry-run-ignore-errors
--fixed-installdir-naming-scheme
--from-pr='10888'
--github-user='pescobar'
--ignore-dirs='.git,.svn'
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/users/pescobar/.local/easybuild'
--job-backend='GC3Pie'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/users/pescobar'
--job-polling-interval='30.0'
--lib64-fallback-sanity-check
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/users/pescobar/.local/easybuild/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--repository='FileRepository'
--repositorypath='/users/pescobar/.local/easybuild/ebfiles_repo'
--robot-paths=''
--robot='/users/pescobar/.virtualenvs/eb-4.2.1/easybuild/easyconfigs'
--sourcepath='/shared/maintainers/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--tmpdir='/tmp/pescobar/eb-tmp'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

  • core count: 16
  • cpu arch: x86_64
  • cpu arch name: UNKNOWN
  • cpu model: Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz
  • cpu speed: 3196.298
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper; OFFLOAD_TARGET_NAMES=nvptx-none; OFFLOAD_TARGET_DEFAULT=1; Target: x86_64-redhat-linux; Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 8.3.1 20191121 (Red Hat 8.3.1-5) (GCC) ;
  • glibc version: 2.28
  • hostname: generoso-x-1
  • os name: centos linux
  • os type: Linux
  • os version: 8.2.2004
  • platform name: x86_64-unknown-linux
  • python version: 3.6.8 (default, Apr 16 2020, 01:36:27) ; [GCC 8.3.1 20191121 (Red Hat 8.3.1-5)]
  • system gcc path: /usr/bin/gcc
  • system python path: /users/pescobar/.virtualenvs/eb-4.2.1/bin/python
  • total memory: 64162

List of loaded modules

  • (none)

Environment

BASH_ENV = /apps/modules/lmod/lmod/init/bash
BASH_FUNC_ml%% = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module%% = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
CPATH = /apps/slurm/default/include:/apps/modules/lua/5.3.5/include:/opt/git/include:/apps/slurm/default/include:/opt/openldap-2.4.49/include:/apps/modules/lua/5.3.5/include:/opt/git/include:/apps/slurm/default/include:/opt/openldap-2.4.49/include:/apps/modules/lua/5.3.5/include:/opt/git/include
DBUS_SESSION_BUS_ADDRESS = unix:path=/run/user/5009/bus
EB_SCRIPT_PATH = /users/pescobar/.virtualenvs/eb-4.2.1/bin/eb
EDITOR = vim
FANCYLOGGER_IGNORE_MPI4PY = 1
FPATH = /apps/modules/lmod/lmod/init/ksh_funcs
GCC_COLORS = error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01
HISTCONTROL = ignoredups
HISTFILESIZE = 100000000
HISTSIZE = 1000000
HISTTIMEFORMAT = %F %T 
HOME = /users/pescobar
HOSTNAME = generoso-x-1
LANG = en_US.UTF-8
LC_ADDRESS = es_ES.UTF-8
LC_IDENTIFICATION = es_ES.UTF-8
LC_MEASUREMENT = es_ES.UTF-8
LC_MONETARY = es_ES.UTF-8
LC_NAME = es_ES.UTF-8
LC_NUMERIC = es_ES.UTF-8
LC_PAPER = es_ES.UTF-8
LC_TELEPHONE = es_ES.UTF-8
LD_LIBRARY_PATH = /apps/slurm/default/lib:/opt/git/lib/lib:/apps/slurm/default/lib:/opt/openldap-2.4.49/lib/lib:/opt/git/lib/lib:/apps/slurm/default/lib:/opt/openldap-2.4.49/lib/lib:/opt/git/lib
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LIBRARY_PATH = /apps/slurm/default/lib:/opt/git/lib:/apps/slurm/default/lib:/opt/openldap-2.4.49/lib:/opt/git/lib:/apps/slurm/default/lib:/opt/openldap-2.4.49/lib:/opt/git/lib
LMOD_CMD = /apps/modules/lmod/lmod/libexec/lmod
LMOD_DIR = /apps/modules/lmod/lmod/libexec
LMOD_PKG = /apps/modules/lmod/lmod
LMOD_ROOT = /apps/modules/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_VERSION = 8.3.13
LMOD_sys = Linux
LOGNAME = pescobar
LS_COLORS = rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
LUAROCKS_PREFIX = /apps/modules/lua/luarocks/3.2.1
LUA_CPATH = /apps/modules/lua/5.3.5/lib/lua/5.3/?.so;/apps/modules/lua/luarocks/3.2.1/lib/lua/5.3/?.so;;
LUA_PATH = /apps/modules/lua/5.3.5/share/lua/5.3/?.lua;/apps/modules/lua/5.3.5/share/lua/5.3/?/init.lua;/apps/modules/lua/luarocks/3.2.1/share/lua/5.3/?.lua;/apps/modules/lua/luarocks/3.2.1/share/lua/5.3/?/init.lua;;
MAIL = /var/spool/mail/pescobar
MANPATH = /apps/slurm/default/share/man:/opt/git/share/man:/apps/slurm/default/share/man:/opt/openldap-2.4.49/share/man:/opt/git/share/man:/apps/slurm/default/share/man:/opt/openldap-2.4.49/share/man:/apps/modules/lmod/lmod/share/man:/opt/git/share/man
MODULEPATH = /apps/modules/modulefiles/Linux:/apps/modules/modulefiles/Core:/apps/modules/lmod/lmod/modulefiles/Core
MODULEPATH_ROOT = /apps/modules/modulefiles
MODULESHOME = /apps/modules/lmod/lmod
PATH = /users/pescobar/.virtualenvs/eb-4.2.1/bin:/users/pescobar/bin:/users/pescobar/.local/bin:/apps/slurm/default/bin:/apps/modules/lua/luarocks/3.2.1/bin:/apps/modules/lua/5.3.5/bin:/opt/git/bin:/users/pescobar/.virtualenvs/eb-4.2.1/bin:/users/pescobar/bin:/users/pescobar/.local/bin:/apps/slurm/default/bin:/opt/openldap-2.4.49/bin:/opt/openldap-2.4.49/sbin:/opt/openldap-2.4.49/libexec:/apps/modules/lua/luarocks/3.2.1/bin:/apps/modules/lua/5.3.5/bin:/opt/git/bin:/users/pescobar/bin:/users/pescobar/.local/bin:/apps/slurm/default/bin:/opt/openldap-2.4.49/bin:/opt/openldap-2.4.49/sbin:/opt/openldap-2.4.49/libexec:/apps/modules/lua/luarocks/3.2.1/bin:/apps/modules/lua/5.3.5/bin:/opt/git/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin
PMI_FD = 13
PMI_JOBID = 1272.0
PMI_RANK = 0
PMI_SIZE = 1
PROMPT_COMMAND = printf "\033]0;%s@%s:%s\007" "${USER}" "${HOSTNAME%%.*}" "${PWD/#$HOME/\~}"
history -a; history -c; history -r
history -a; history -c; history -r
history -a; history -c; history -r
history -a; history -c; history -r
history -a; history -c; history -r
PWD = /users/pescobar
PYTHONOPTIMIZE = 1
SELINUX_LEVEL_REQUESTED = 
SELINUX_ROLE_REQUESTED = 
SELINUX_USE_CURRENT_RANGE = 
SHELL = /bin/bash
SHLVL = 4
SINFO_FORMAT = %9P %5a %8s %.10l %.6c %.6z %.7D %10T %N
SLURMD_NODENAME = generoso-x-1
SLURM_CLUSTER_NAME = generoso
SLURM_CONF = /apps/slurm/20-02-1-1/etc/slurm.conf
SLURM_CPUS_ON_NODE = 16
SLURM_CPUS_PER_TASK = 16
SLURM_CPU_BIND = quiet,mask_cpu:0xFFFF
SLURM_CPU_BIND_LIST = 0xFFFF
SLURM_CPU_BIND_TYPE = mask_cpu:
SLURM_CPU_BIND_VERBOSE = quiet
SLURM_DISTRIBUTION = cyclic
SLURM_GTIDS = 0
SLURM_JOBID = 1272
SLURM_JOB_CPUS_PER_NODE = 16
SLURM_JOB_GID = 5010
SLURM_JOB_ID = 1272
SLURM_JOB_NAME = bash
SLURM_JOB_NODELIST = generoso-x-1
SLURM_JOB_NUM_NODES = 1
SLURM_JOB_PARTITION = normal
SLURM_JOB_UID = 5009
SLURM_JOB_USER = pescobar
SLURM_LAUNCH_NODE_IPADDR = 10.1.0.13
SLURM_LOCALID = 0
SLURM_MPI_TYPE = pmi2
SLURM_NNODES = 1
SLURM_NODEID = 0
SLURM_NODELIST = generoso-x-1
SLURM_NPROCS = 1
SLURM_NTASKS = 1
SLURM_PRIO_PROCESS = 0
SLURM_PROCID = 0
SLURM_PTY_PORT = 42485
SLURM_PTY_WIN_COL = 231
SLURM_PTY_WIN_ROW = 54
SLURM_SRUN_COMM_HOST = 10.1.0.13
SLURM_SRUN_COMM_PORT = 43157
SLURM_STEPID = 0
SLURM_STEP_ID = 0
SLURM_STEP_LAUNCHER_PORT = 43157
SLURM_STEP_NODELIST = generoso-x-1
SLURM_STEP_NUM_NODES = 1
SLURM_STEP_NUM_TASKS = 1
SLURM_STEP_TASKS_PER_NODE = 1
SLURM_SUBMIT_DIR = /users/pescobar
SLURM_SUBMIT_HOST = generoso
SLURM_TASKS_PER_NODE = 1
SLURM_TASK_PID = 2498315
SLURM_TIME_FORMAT = relative
SLURM_TOPOLOGY_ADDR = generoso-x-1
SLURM_TOPOLOGY_ADDR_PATTERN = node
SLURM_UMASK = 0002
SLURM_WORKING_CLUSTER = generoso:generoso:6817:8960:101
SQUEUE_FORMAT = %.8i %.8u %.50j %.3t %9r %10S %.10M %.10L %.5D %.4C
SRUN_DEBUG = 3
SSH_AGENT_PID = 435616
SSH_AUTH_SOCK = /tmp/ssh-BS1AHRafFJl0/agent.435615
SSH_CLIENT = 131.152.84.49 55048 22
SSH_CONNECTION = 131.152.84.49 55048 10.1.0.13 22
SSH_TTY = /dev/pts/0
TERM = screen-256color
TMPDIR = /tmp
TMUX = /tmp/tmux-5009/default,435538,0
TMUX_PANE = %0
TMUX_VERSION = 2.7
USER = pescobar
VIRTUALENVWRAPPER_HOOK_DIR = /users/pescobar/.virtualenvs
VIRTUALENVWRAPPER_PROJECT_FILENAME = .project
VIRTUALENVWRAPPER_SCRIPT = /users/pescobar/.local/bin/virtualenvwrapper.sh
VIRTUALENVWRAPPER_WORKON_CD = 1
VIRTUAL_ENV = /users/pescobar/.virtualenvs/eb-4.2.1
WORKON_HOME = /users/pescobar/.virtualenvs
XDG_RUNTIME_DIR = /run/user/5009
XDG_SESSION_ID = 112
_ = /users/pescobar/.virtualenvs/eb-4.2.1/bin/python
__LMOD_SET_FPATH = 1
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