peterk87

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE plist PUBLIC "-//Apple Computer//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
<plist version="1.0">
<dict>
   <key>name</key>
   <string>Comments</string>
   <key>scope</key>
   <string>source.cs</string>
   <key>settings</key>
   <dict>

peterk87

// Interpolate between 2 colors in C#
// Taken from answer by user Jason
// http://stackoverflow.com/questions/1236683/color-interpolation-between-3-colors-in-net
class ColorInterpolator {
    delegate byte ComponentSelector(Color color);
    static ComponentSelector _redSelector = color => color.R;
    static ComponentSelector _greenSelector = color => color.G;
    static ComponentSelector _blueSelector = color => color.B;

    public static Color InterpolateBetween(

peterk87

\documentclass{article}

\usepackage{lineno}
\usepackage{url}

\usepackage{hyperref}

\usepackage{fancyhdr} % Needed to define custom headers/footers
\usepackage{titlesec}
\usepackage{lastpage} % Used to determine the number of pages in the document (for "Page X of Total")

peterk87

/*dark theme CSS for NCIX.com*/
div, table, b, td, tr, form, h1, h2, h3, h4, h5, input, select, span {
background: none !important;
}

div, table, b, td, tr, form, h1, h2, h3, h4, h5, textarea, input, select, span {
  color: rgb(170,170,170) !important;
  background-color: rgb(30,30,30) !important;
  
}

peterk87

@article{kruczkiewicz_mist,
	title = {{MIST}: a tool for rapid \emph{in silico} generation of molecular data from bacterial genome sequences},
	author = {Kruczkiewicz, Peter and Mutschall, Steven and Barker, Dillon and Thomas, James and Van Domselaar, Gary and  Gannon, Victor P.J. and Carrillo, Catherine D. and Taboada, Eduardo N.},
	year = {2013},
	location = {Barcelona, Spain},
	pages = {316--323},
	isbn = {978-989-8565-35-8},
	publisher = {SCITEPRESS},
	journal = {Proceedings of Bioinformatics 2013: 4th International Conference on Bioinformatics Models, Methods and Algorithms}
}

peterk87

@article{olson_limited_2007,
	title = {Limited genetic diversity in \emph{{Salmonella enterica}} Serovar {Enteritidis} {PT13}},
	volume = {7},
	copyright = {2007 Olson et al; licensee {BioMed} Central Ltd.},
	issn = {1471-2180},
	url = {http://www.biomedcentral.com/1471-2180/7/87/abstract},
	doi = {10.1186/1471-2180-7-87},
	abstract = {Salmonella enterica serovar Enteritidis has emerged as a significant foodborne pathogen throughout the world and is commonly characterized by phage typing. In Canada phage types ({PT)} 4, 8 and 13 predominate and in 2005 a large foodborne {PT13} outbreak occurred in the province of Ontario. The ability to link strains during this outbreak was difficult due to the apparent clonality of {PT13} isolates in Canada, as there was a single dominant pulsed-field gel electrophoresis ({PFGE)} profile amongst epidemiologically linked human and food isolates as well as concurrent sporadic strains. The aim of this study was to perform comparative genomic hybridization ({CGH)}, {DNA} sequen

peterk87

# Printing stack trace and continuing after error occurs in R
# http://stackoverflow.com/questions/1975110/printing-stack-trace-and-continuing-after-error-occurs-in-r
# Bob Albright
# I wrote this code about a week ago to help me track down errors that come primarily from non-interactive R sessions. It's still a little rough, but it prints a stack trace and continues on. Let me know if this is useful, I'd be interested in how you would make this more informative. I'm also open into cleaner ways to get this information.

options(warn = 2, keep.source = TRUE, error = 
  quote({ 
    cat("Environment:\n", file=stderr()); 

    # TODO: setup option for dumping to a file (?)

peterk87

<style type="text/css">body { padding-top: 25px;}</style>
<div class="navbar navbar-fixed-top navbar-inverse" id="tool" data-nav-value="dataview">
  <div class="navbar-inner">
    <div class="container-fluid">
      <a class="brand" href="#" data-value="dataview">Navigation bar title for whatever app!</a>
      <div class="nav-collapse">
        <ul class="nav">
          <li><a href="#" data-value="dataview">View</a></li>
          <li class="dropdown">
            <a href="#" class="dropdown-toggle" data-toggle="dropdown">EDAT<b class="caret"></b></a>

peterk87

/*feedly.com dark CSS theme*/
.placeholder{
  visibility: hidden !important;
 }
.area,.summary, div, .light {
 background-color: rgb(30,30,30) !important;
 color: rgb(200,200,200) !important;
}
a {
 color: #78B7F5 !important;

peterk87

/*coursera dark CSS style*/
/*URL on domain: coursera.org*/
a {
	color: rgb(140, 178, 228) !important;
}
body,.row-fluid .span9,.row-fluid .span3,.row-fluid, div, li, ul, ol, .course-navbar-list .course-navbar-item.active a {
	background-color: rgb(31, 31, 31) !important;
	color: rgb(170,170,170) !important;
}