Created
December 12, 2012 00:37
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MPI Error
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[root@CentOS src]# make run_mpi | |
mpicc -o sw.o smith_waterman.c | |
mpiexec -np 1 ./sw.o ../input_data/sequence1.dat ../input_data/sequence2.dat ../input_data/data.score -1 | |
argv[0] = ./sw.o | |
argv[1] = ../input_data/sequence1.dat | |
argv[2] = ../input_data/sequence2.dat | |
argv[3] = ../input_data/data.score | |
argv[4] = -1 | |
./sw.o: invalid option -- '1' | |
PAM file empty | |
-------------------------------------------------------------------------- | |
mpiexec has exited due to process rank 0 with PID 2624 on | |
node CentOS exiting improperly. There are two reasons this could occur: | |
1. this process did not call "init" before exiting, but others in | |
the job did. This can cause a job to hang indefinitely while it waits | |
for all processes to call "init". By rule, if one process calls "init", | |
then ALL processes must call "init" prior to termination. | |
2. this process called "init", but exited without calling "finalize". | |
By rule, all processes that call "init" MUST call "finalize" prior to | |
exiting or it will be considered an "abnormal termination" | |
This may have caused other processes in the application to be | |
terminated by signals sent by mpiexec (as reported here). | |
-------------------------------------------------------------------------- | |
make: *** [run_mpi] Error 1 |
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